BLASTX nr result

ID: Cimicifuga21_contig00016261 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00016261
         (219 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001190433.1| PREDICTED: histone H4-like [Strongylocentrot...    64   2e-08
gb|AFY23222.1| histone H4.3 [Hematodinium sp. SG-2012]                 62   4e-08
pdb|1P3O|B Chain B, Crystallographic Studies Of Nucleosome Core ...    62   5e-08
ref|XP_003972557.1| PREDICTED: histone H4-like [Takifugu rubripes]     62   5e-08
sp|P27996.2|H4_SOLST RecName: Full=Histone H4 gi|10339|emb|CAA38...    62   6e-08

>ref|XP_001190433.1| PREDICTED: histone H4-like [Strongylocentrotus purpuratus]
          Length = 103

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 11/74 (14%)
 Frame = +3

Query: 3   LGKGGAKRHKKTIQDITKPAIGQKGLRGITKPAIKRLARCGGAKPISGLIY--------- 155
           LGKGGAKRH+K ++D          ++GITKPAI+RLAR GG K ISGLIY         
Sbjct: 11  LGKGGAKRHRKVLRD---------NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKV 61

Query: 156 --KGEIDDTDTYCK 191
             +  I DT TYC+
Sbjct: 62  FLENVIRDTVTYCE 75


>gb|AFY23222.1| histone H4.3 [Hematodinium sp. SG-2012]
          Length = 206

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 11/74 (14%)
 Frame = +3

Query: 3   LGKGGAKRHKKTIQDITKPAIGQKGLRGITKPAIKRLARCGGAKPISGLIY--------- 155
           +GKGG KRH+K ++D          ++G+TKPAI+RLAR GG K ISGLIY         
Sbjct: 114 IGKGGGKRHRKVLRD---------NIQGVTKPAIRRLARRGGVKRISGLIYEETRLVLRA 164

Query: 156 --KGEIDDTDTYCK 191
             +G + DT TYC+
Sbjct: 165 FLEGVLRDTITYCE 178


>pdb|1P3O|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants gi|46015170|pdb|1P3O|F
           Chain F, Crystallographic Studies Of Nucleosome Core
           Particles Containing Histone 'sin' Mutants
          Length = 102

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 32/52 (61%), Positives = 39/52 (75%)
 Frame = +3

Query: 3   LGKGGAKRHKKTIQDITKPAIGQKGLRGITKPAIKRLARCGGAKPISGLIYK 158
           LGKGGAKRH+K ++D          ++GITKPAI+RLAR GGAK ISGLIY+
Sbjct: 10  LGKGGAKRHRKVLRD---------NIQGITKPAIRRLARRGGAKRISGLIYE 52


>ref|XP_003972557.1| PREDICTED: histone H4-like [Takifugu rubripes]
          Length = 141

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 41/81 (50%), Positives = 47/81 (58%), Gaps = 29/81 (35%)
 Frame = +3

Query: 3   LGKGGAKRHKKTIQD----ITKPAI---------GQKGL----------------RGITK 95
           LGKGGAKRH+K ++D    ITKPAI         G KGL                +GITK
Sbjct: 11  LGKGGAKRHRKVLRDNIQGITKPAIRLNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITK 70

Query: 96  PAIKRLARCGGAKPISGLIYK 158
           PAI+RLAR GG K ISGLIY+
Sbjct: 71  PAIRRLARRGGVKRISGLIYE 91


>sp|P27996.2|H4_SOLST RecName: Full=Histone H4 gi|10339|emb|CAA38055.1| histone H4
           [Solaster stimpsoni]
          Length = 103

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 11/74 (14%)
 Frame = +3

Query: 3   LGKGGAKRHKKTIQDITKPAIGQKGLRGITKPAIKRLARCGGAKPISGLIY--------- 155
           LGKGGAKRH+K ++D          ++GITKPAI+RLAR GG K ISGLIY         
Sbjct: 11  LGKGGAKRHRKVLRD---------NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKV 61

Query: 156 --KGEIDDTDTYCK 191
             +  I D  TYC+
Sbjct: 62  FLENVIRDAVTYCE 75


Top