BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00016217
         (1445 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containi...   327   5e-87
ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group] g...   323   7e-86
gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japo...   323   7e-86
gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indi...   323   7e-86
ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containi...   313   7e-83

>ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
            chloroplastic-like [Brachypodium distachyon]
          Length = 555

 Score =  327 bits (838), Expect = 5e-87
 Identities = 160/301 (53%), Positives = 209/301 (69%), Gaps = 2/301 (0%)
 Frame = +3

Query: 9    YAQCGDLELARSLFDEMPQRDVFSWSCMISGYAQSHRGEDALKLFKNMIDESLTSPNEVT 188
            YA  G++  AR LFD MP++DV SW+CMISGYAQ+    + L+LF+ M  ES   PNEVT
Sbjct: 251  YAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVT 310

Query: 189  LVSVLSVCGHLTSLDQGKWIHAYIKRNGMKLSD--NLGAALVDMYAKCGCVETAFEVFSK 362
            +VSVLS C HLT+L++G+W HA+I ++ M L    NLGAAL+DMY+KCG  + A ++F  
Sbjct: 311  MVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHS 370

Query: 363  LDHRNVSTWNALITGLAINGIAHEALEAFLEMQRLDTKPNSITFLGVLMACCHGGLVKEG 542
            LD +NVS WNALITGLA+NG    +++ F +M+R   KPN ITF+GVL AC HGGLV EG
Sbjct: 371  LDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEG 430

Query: 543  RQHFYSMLKDYEIQPEMKHYGCMVDXXXXXXXXXXXXXIVKSMPMKPDVMVLGALLGACR 722
            R+ F SM     +QPE KHYGCMVD             +++SMPM PDVM+LGALLGACR
Sbjct: 431  RRCFQSMASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIRSMPMVPDVMILGALLGACR 490

Query: 723  IHGNIEIANRLHKDFLELKSREAGCHVLYSNIYAAAGRWVDASDMRGILTIKQIKKEAGF 902
            +H  +++A R+  + L L ++++GCHVL S+IYAAAG+W DA   RG+L    I K  G 
Sbjct: 491  MHKRVDVAARVQNEILGLSTQQSGCHVLISDIYAAAGKWADALYARGVLQKFGISKLRGS 550

Query: 903  S 905
            S
Sbjct: 551  S 551


>ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
            gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR)
            repeat-containing protein-like [Oryza sativa Japonica
            Group] gi|42407750|dbj|BAD08896.1| pentatricopeptide
            (PPR) repeat-containing protein-like [Oryza sativa
            Japonica Group] gi|113624127|dbj|BAF24072.1| Os08g0500600
            [Oryza sativa Japonica Group]
          Length = 429

 Score =  323 bits (828), Expect = 7e-86
 Identities = 157/298 (52%), Positives = 214/298 (71%), Gaps = 4/298 (1%)
 Frame = +3

Query: 9    YAQCGDLELARSLFDEMPQRDVFSWSCMISGYAQSHRGEDALKLFKNMIDESLTSPNEVT 188
            Y+   D++ AR LFD MP++DV SW+CMISGYAQ+ R +D L+LF+ M  ES   PNEVT
Sbjct: 129  YSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVT 188

Query: 189  LVSVLSVCGHLTSLDQGKWIHAYIKRNGMKLSD--NLGAALVDMYAKCGCVETAFEVFSK 362
            +VSVLS C +LT+L++G+W+HA+I ++ M L++  NLGAAL+DMYAKCG  + A ++F+ 
Sbjct: 189  MVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNS 248

Query: 363  LDHRNVSTWNALITGLAINGIAHEALEAFLEMQRLDTKPNSITFLGVLMACCHGGLVKEG 542
            LD +NVS WNALIT LA+NG A ++++AF +M+R   KPN ITF+GVL AC HGGLV EG
Sbjct: 249  LDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEG 308

Query: 543  RQHFYSMLKDYEIQPEMKHYGCMVDXXXXXXXXXXXXXIVKSMPMKPDVMVLGALLGACR 722
            R+ F SM     +QPE+KHYGCMVD             +++SMPM PDVMV GALLGACR
Sbjct: 309  RRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACR 368

Query: 723  IHGNIEIANRLHKDF--LELKSREAGCHVLYSNIYAAAGRWVDASDMRGILTIKQIKK 890
            +H   ++A R+  +   L L ++++GCHVL S+IYAAAG+W D  + R ++    I+K
Sbjct: 369  MHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 426


>gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
          Length = 567

 Score =  323 bits (828), Expect = 7e-86
 Identities = 157/298 (52%), Positives = 214/298 (71%), Gaps = 4/298 (1%)
 Frame = +3

Query: 9    YAQCGDLELARSLFDEMPQRDVFSWSCMISGYAQSHRGEDALKLFKNMIDESLTSPNEVT 188
            Y+   D++ AR LFD MP++DV SW+CMISGYAQ+ R +D L+LF+ M  ES   PNEVT
Sbjct: 267  YSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVT 326

Query: 189  LVSVLSVCGHLTSLDQGKWIHAYIKRNGMKLSD--NLGAALVDMYAKCGCVETAFEVFSK 362
            +VSVLS C +LT+L++G+W+HA+I ++ M L++  NLGAAL+DMYAKCG  + A ++F+ 
Sbjct: 327  MVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNS 386

Query: 363  LDHRNVSTWNALITGLAINGIAHEALEAFLEMQRLDTKPNSITFLGVLMACCHGGLVKEG 542
            LD +NVS WNALIT LA+NG A ++++AF +M+R   KPN ITF+GVL AC HGGLV EG
Sbjct: 387  LDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEG 446

Query: 543  RQHFYSMLKDYEIQPEMKHYGCMVDXXXXXXXXXXXXXIVKSMPMKPDVMVLGALLGACR 722
            R+ F SM     +QPE+KHYGCMVD             +++SMPM PDVMV GALLGACR
Sbjct: 447  RRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACR 506

Query: 723  IHGNIEIANRLHKDF--LELKSREAGCHVLYSNIYAAAGRWVDASDMRGILTIKQIKK 890
            +H   ++A R+  +   L L ++++GCHVL S+IYAAAG+W D  + R ++    I+K
Sbjct: 507  MHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 564


>gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
          Length = 567

 Score =  323 bits (828), Expect = 7e-86
 Identities = 157/298 (52%), Positives = 214/298 (71%), Gaps = 4/298 (1%)
 Frame = +3

Query: 9    YAQCGDLELARSLFDEMPQRDVFSWSCMISGYAQSHRGEDALKLFKNMIDESLTSPNEVT 188
            Y+   D++ AR LFD MP++DV SW+CMISGYAQ+ R +D L+LF+ M  ES   PNEVT
Sbjct: 267  YSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVT 326

Query: 189  LVSVLSVCGHLTSLDQGKWIHAYIKRNGMKLSD--NLGAALVDMYAKCGCVETAFEVFSK 362
            +VSVLS C +LT+L++G+W+HA+I ++ M L++  NLGAAL+DMYAKCG  + A ++F+ 
Sbjct: 327  MVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNS 386

Query: 363  LDHRNVSTWNALITGLAINGIAHEALEAFLEMQRLDTKPNSITFLGVLMACCHGGLVKEG 542
            LD +NVS WNALIT LA+NG A ++++AF +M+R   KPN ITF+GVL AC HGGLV EG
Sbjct: 387  LDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEG 446

Query: 543  RQHFYSMLKDYEIQPEMKHYGCMVDXXXXXXXXXXXXXIVKSMPMKPDVMVLGALLGACR 722
            R+ F SM     +QPE+KHYGCMVD             +++SMPM PDVMV GALLGACR
Sbjct: 447  RRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACR 506

Query: 723  IHGNIEIANRLHKDF--LELKSREAGCHVLYSNIYAAAGRWVDASDMRGILTIKQIKK 890
            +H   ++A R+  +   L L ++++GCHVL S+IYAAAG+W D  + R ++    I+K
Sbjct: 507  MHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 564


>ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like
            [Cucumis sativus]
          Length = 953

 Score =  313 bits (802), Expect = 7e-83
 Identities = 151/305 (49%), Positives = 206/305 (67%)
 Frame = +3

Query: 3    SSYAQCGDLELARSLFDEMPQRDVFSWSCMISGYAQSHRGEDALKLFKNMIDESLTSPNE 182
            S Y +C  ++ A+++FD MP++DV SWS MISGYAQ+   ++ L LF+ M   S   P+E
Sbjct: 450  SGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEM-QMSGFKPDE 508

Query: 183  VTLVSVLSVCGHLTSLDQGKWIHAYIKRNGMKLSDNLGAALVDMYAKCGCVETAFEVFSK 362
             TLVSV+S C  L +L+QGKW+HAYIKRNG+ ++  LG  L+DMY KCGCVETA EVF  
Sbjct: 509  TTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYG 568

Query: 363  LDHRNVSTWNALITGLAINGIAHEALEAFLEMQRLDTKPNSITFLGVLMACCHGGLVKEG 542
            +  + +STWNALI GLA+NG+   +L+ F  M++    PN ITF+GVL AC H GLV EG
Sbjct: 569  MIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEG 628

Query: 543  RQHFYSMLKDYEIQPEMKHYGCMVDXXXXXXXXXXXXXIVKSMPMKPDVMVLGALLGACR 722
            + HFYSM+ D++IQP +KHYGCMVD             ++  MPM PDV   GALLGAC+
Sbjct: 629  QHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACK 688

Query: 723  IHGNIEIANRLHKDFLELKSREAGCHVLYSNIYAAAGRWVDASDMRGILTIKQIKKEAGF 902
             HG+ E+  R+ +  +EL+    G HVL SNIYA+ G+W D  ++RG++T  ++ K  G 
Sbjct: 689  KHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGC 748

Query: 903  SSVQA 917
            S ++A
Sbjct: 749  SMIEA 753



 Score = 94.0 bits (232), Expect = 9e-17
 Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 31/201 (15%)
 Frame = +3

Query: 36  ARSLFDEMPQRDVFSWSCMISGYAQSHRGEDALKLFKNMIDESLTSPNEVTLVSVLSVCG 215
           A  LFDEM ++D+ +WS +I+ + Q+   E+A++ F  M    +   +EV  VS LS C 
Sbjct: 329 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMV-DEVVAVSALSACA 387

Query: 216 HLTSLDQGKWIHAYIKRNGMKLSDNLGAALVDMYAKCG---------------------- 329
           +L  ++ GK IH+   + G +   NL  AL+ MY+KCG                      
Sbjct: 388 NLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNS 447

Query: 330 ---------CVETAFEVFSKLDHRNVSTWNALITGLAINGIAHEALEAFLEMQRLDTKPN 482
                     V+ A  +F  +  ++V +W+++I+G A N +  E L  F EMQ    KP+
Sbjct: 448 MISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPD 507

Query: 483 SITFLGVLMACCHGGLVKEGR 545
             T + V+ AC     +++G+
Sbjct: 508 ETTLVSVISACARLAALEQGK 528