BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00016092
         (1260 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265695.1| PREDICTED: psbP domain-containing protein 4,...   388   e-105
ref|XP_002526176.1| Thylakoid lumenal 29.8 kDa protein, chloropl...   384   e-104
ref|XP_002300943.1| predicted protein [Populus trichocarpa] gi|2...   370   e-100
ref|XP_002889122.1| thylakoid lumenal 29.8 kDa protein [Arabidop...   367   5e-99
ref|NP_565149.2| PsbP domain-containing protein 4 [Arabidopsis t...   361   2e-97

>ref|XP_002265695.1| PREDICTED: psbP domain-containing protein 4, chloroplastic [Vitis
            vinifera] gi|302142754|emb|CBI19957.3| unnamed protein
            product [Vitis vinifera]
          Length = 279

 Score =  388 bits (997), Expect = e-105
 Identities = 199/290 (68%), Positives = 234/290 (80%), Gaps = 6/290 (2%)
 Frame = +1

Query: 181  MGSTLFTNYLYSLRYDHKSSHLLHSKQMNKFPCTCFQASEEKKGCSRTKANEEYR----- 345
            MG+++FT+  +S R  H   H++ S +           S   KG S  KA  + R     
Sbjct: 1    MGTSIFTSCSFSWRNHH---HIIPSHRF-------LSHSSPDKGLSVAKAAVDTRQNGCV 50

Query: 346  -VVDEDNAEIFCGVLKRRTAIVSGVSLLTTAALGFPRDGLAVLKQGLLAGRIPGLSEPDE 522
              VDE+  E F G LKRR+AIVSGVSL+++A LGFPR+GLAV+KQGLLAGR+PGLSEPDE
Sbjct: 51   EFVDEET-EKFSGFLKRRSAIVSGVSLISSAVLGFPREGLAVVKQGLLAGRVPGLSEPDE 109

Query: 523  QGWRTYRRPDEKSGGHGVGWSPIIPYTFSVPQDWEEVPVSIADLGGTEIDLRFASSQEGK 702
            QGWRTYRRPDEKSGGHGVGWSPIIPY FSVP  WEEVPVSIADLGGTEIDLRFA+S+EG+
Sbjct: 110  QGWRTYRRPDEKSGGHGVGWSPIIPYIFSVPSGWEEVPVSIADLGGTEIDLRFANSKEGR 169

Query: 703  LFVIVAPVLRFADNLGEDVKIENIGPPDKVISAFGPEVIGENVDGKVLSTEVMEYEGRMY 882
            LFVIVAPVLRFADNLG+D K+E IGPP+KVI+AFGPEVIGENV+GKVLS  V+E+ GR Y
Sbjct: 170  LFVIVAPVLRFADNLGDDAKVEKIGPPEKVIAAFGPEVIGENVEGKVLSMGVVEHSGRTY 229

Query: 883  YHYELEPPHALITATAAGNRLYLFNVIANGLQWKRHSKELKRISETFRVV 1032
            Y +ELEPPH LITATAAGNRLYLF+V A+GLQWKRH K+LK+I+++FRVV
Sbjct: 230  YQFELEPPHVLITATAAGNRLYLFSVTASGLQWKRHYKDLKKIADSFRVV 279


>ref|XP_002526176.1| Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative
            [Ricinus communis] gi|223534553|gb|EEF36252.1| Thylakoid
            lumenal 29.8 kDa protein, chloroplast precursor, putative
            [Ricinus communis]
          Length = 270

 Score =  384 bits (985), Expect = e-104
 Identities = 196/289 (67%), Positives = 230/289 (79%), Gaps = 5/289 (1%)
 Frame = +1

Query: 181  MGSTLFTNYLYSLRYDHK----SSHLL-HSKQMNKFPCTCFQASEEKKGCSRTKANEEYR 345
            MG+T+FT+  +  +Y H+    SSHLL HS Q              + G SR +A  E R
Sbjct: 1    MGTTIFTSCSFPWKYHHQQMVPSSHLLGHSSQ--------------ETGVSRIRATIEPR 46

Query: 346  VVDEDNAEIFCGVLKRRTAIVSGVSLLTTAALGFPRDGLAVLKQGLLAGRIPGLSEPDEQ 525
              ++       G+LKRR+A+VSG+SL ++  LGFP DGLA +KQGLLAGRIPGLSEPDEQ
Sbjct: 47   EFEKP-----IGLLKRRSALVSGISLASSTILGFPGDGLAAVKQGLLAGRIPGLSEPDEQ 101

Query: 526  GWRTYRRPDEKSGGHGVGWSPIIPYTFSVPQDWEEVPVSIADLGGTEIDLRFASSQEGKL 705
            GWRTYRRPD+KSGGHGVGWSPIIPY F VPQ+WEEVPVSIADLGGTEIDLRF+SS+EG+L
Sbjct: 102  GWRTYRRPDDKSGGHGVGWSPIIPYAFKVPQEWEEVPVSIADLGGTEIDLRFSSSKEGRL 161

Query: 706  FVIVAPVLRFADNLGEDVKIENIGPPDKVISAFGPEVIGENVDGKVLSTEVMEYEGRMYY 885
            FVIVAPVLRFAD+LG++  IE IGPP+KVI+AFGPEVIGENV+GKVLS  V E+ GRMYY
Sbjct: 162  FVIVAPVLRFADDLGDNATIERIGPPEKVINAFGPEVIGENVEGKVLSMNVAEHSGRMYY 221

Query: 886  HYELEPPHALITATAAGNRLYLFNVIANGLQWKRHSKELKRISETFRVV 1032
             +ELEPPH LITATAAGNRLYLF+V  NGLQWKRH K+LKRI+E+FRVV
Sbjct: 222  QFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIAESFRVV 270


>ref|XP_002300943.1| predicted protein [Populus trichocarpa] gi|222842669|gb|EEE80216.1|
            predicted protein [Populus trichocarpa]
          Length = 276

 Score =  370 bits (951), Expect = e-100
 Identities = 193/288 (67%), Positives = 220/288 (76%), Gaps = 4/288 (1%)
 Frame = +1

Query: 181  MGSTLFTNYLYSLRYDHKS----SHLLHSKQMNKFPCTCFQASEEKKGCSRTKANEEYRV 348
            MG+TL T+     RY H+     +HLL   Q   FP      +E +K       NE+   
Sbjct: 1    MGTTLLTSCGIQWRYHHQQIVPDNHLLSHSQ-ESFPSRAKITAESRKNGFLDGENEKS-- 57

Query: 349  VDEDNAEIFCGVLKRRTAIVSGVSLLTTAALGFPRDGLAVLKQGLLAGRIPGLSEPDEQG 528
                      G LKRR+ +VSGVSL++T+ LG   +GLAV+KQGLLAGRIPGLSEPD+QG
Sbjct: 58   ---------AGFLKRRSVLVSGVSLVSTSVLGSAGEGLAVVKQGLLAGRIPGLSEPDDQG 108

Query: 529  WRTYRRPDEKSGGHGVGWSPIIPYTFSVPQDWEEVPVSIADLGGTEIDLRFASSQEGKLF 708
            WRTYRRPD+KSGGHGVGWSPIIPY FSVPQ WEEVPVSIADLGGTEIDLRF SS+EG+LF
Sbjct: 109  WRTYRRPDDKSGGHGVGWSPIIPYLFSVPQGWEEVPVSIADLGGTEIDLRFGSSKEGRLF 168

Query: 709  VIVAPVLRFADNLGEDVKIENIGPPDKVISAFGPEVIGENVDGKVLSTEVMEYEGRMYYH 888
            VIVAPVLRFAD LGE+  IE IGPP+KVI+AFGPEVIGENV+GKVLS  V E+ GR YY 
Sbjct: 169  VIVAPVLRFADYLGENATIEQIGPPEKVINAFGPEVIGENVEGKVLSMNVEEHSGRRYYQ 228

Query: 889  YELEPPHALITATAAGNRLYLFNVIANGLQWKRHSKELKRISETFRVV 1032
            YELEPPHALITATAAGNRLYLFNV  NGLQWKRH ++LKRI+ +FRVV
Sbjct: 229  YELEPPHALITATAAGNRLYLFNVTGNGLQWKRHYQDLKRIAYSFRVV 276


>ref|XP_002889122.1| thylakoid lumenal 29.8 kDa protein [Arabidopsis lyrata subsp. lyrata]
            gi|297334963|gb|EFH65381.1| thylakoid lumenal 29.8 kDa
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 256

 Score =  367 bits (941), Expect = 5e-99
 Identities = 178/237 (75%), Positives = 204/237 (86%), Gaps = 1/237 (0%)
 Frame = +1

Query: 325  KANEEYRVVDEDNAEIFCGV-LKRRTAIVSGVSLLTTAALGFPRDGLAVLKQGLLAGRIP 501
            K +  +RV  E   +  C   L RR+ + SG SL+++ AL FP DGLAV+KQGLLAGR+P
Sbjct: 20   KISAHHRVDGETQRDERCATALSRRSVLASGFSLVSSTALVFPGDGLAVVKQGLLAGRVP 79

Query: 502  GLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYTFSVPQDWEEVPVSIADLGGTEIDLRF 681
            GLSEPD++GWRTYRRPDEKSGGHGVGWSPIIPY FSVPQDW EVPVSIADLGGTEIDLRF
Sbjct: 80   GLSEPDDEGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRF 139

Query: 682  ASSQEGKLFVIVAPVLRFADNLGEDVKIENIGPPDKVISAFGPEVIGENVDGKVLSTEVM 861
            AS +EG+L VIVAPVLRFADNLG+DVKIENIGPP KVI+AFGPEVIGENV+GKVLS+ V 
Sbjct: 140  ASPKEGRLSVIVAPVLRFADNLGDDVKIENIGPPAKVINAFGPEVIGENVEGKVLSSNVA 199

Query: 862  EYEGRMYYHYELEPPHALITATAAGNRLYLFNVIANGLQWKRHSKELKRISETFRVV 1032
            E+EGR+YY +ELEPPH LITATAAGNRLYLF+V  NGLQWKRH K+LKRI+ +FR+V
Sbjct: 200  EHEGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 256


>ref|NP_565149.2| PsbP domain-containing protein 4 [Arabidopsis thaliana]
            gi|190358910|sp|O49292.2|PPD4_ARATH RecName: Full=PsbP
            domain-containing protein 4, chloroplastic; AltName:
            Full=OEC23-like protein 5; Flags: Precursor
            gi|332197812|gb|AEE35933.1| PsbP domain-containing
            protein 4 [Arabidopsis thaliana]
          Length = 260

 Score =  361 bits (927), Expect = 2e-97
 Identities = 180/252 (71%), Positives = 208/252 (82%), Gaps = 2/252 (0%)
 Frame = +1

Query: 283  CFQASEEKKGCSRTKANEEYRVVDEDNAEI-FCG-VLKRRTAIVSGVSLLTTAALGFPRD 456
            C   S  KK  +  ++N E         E  +C  VL RR+ + SG+ + +T AL FPR+
Sbjct: 10   CVNFSGHKKISAHQRSNSEIPKTSPGGCEDEWCARVLSRRSVMASGL-VSSTTALAFPRE 68

Query: 457  GLAVLKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYTFSVPQDWEEVP 636
            GLAV+KQGLLAGR+PGLSEPDE+GWRTYRRPDEKSGGHGVGWSPIIPY FSVPQDW EVP
Sbjct: 69   GLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVP 128

Query: 637  VSIADLGGTEIDLRFASSQEGKLFVIVAPVLRFADNLGEDVKIENIGPPDKVISAFGPEV 816
            VSIADLGGTEIDLRFAS +EG+L VIVAPVLRFADNLG+DVKIENIG P KVI+AFGPEV
Sbjct: 129  VSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFGPEV 188

Query: 817  IGENVDGKVLSTEVMEYEGRMYYHYELEPPHALITATAAGNRLYLFNVIANGLQWKRHSK 996
            IGENV+GKVLS+ V E++GR+YY +ELEPPH LITATAAGNRLYLF+V  NGLQWKRH K
Sbjct: 189  IGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYK 248

Query: 997  ELKRISETFRVV 1032
            +LKRI+ +FR+V
Sbjct: 249  DLKRIASSFRIV 260