BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00015885
         (306 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]       75   4e-12
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...    74   9e-12
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]       72   4e-11
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    71   8e-11
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...    69   3e-10

>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 39/87 (44%), Positives = 56/87 (64%)
 Frame = +2

Query: 2   ALKIGQSQNKGQKAKSFATVQFTSTKSVEIISSMVNRRLRYGACFLKIWDMERDIIPKPR 181
           ALKI Q +  G   ++FA VQFT +    +I  + N+RL YG  +LK  +ME DI+PKPR
Sbjct: 34  ALKIRQHKKSG---RAFAIVQFTRSSDAGLIIRLANQRLYYGRSYLKAREMETDIVPKPR 90

Query: 182 VSMLNLEATSMHFGNPVSKERFLGLWK 262
           V +  +E  +++FG  VS+E+F  LWK
Sbjct: 91  VFLHTMERVTVNFGCQVSEEKFYVLWK 117


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1133

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 38/86 (44%), Positives = 56/86 (65%)
 Frame = +2

Query: 2   ALKIGQSQNKGQKAKSFATVQFTSTKSVEIISSMVNRRLRYGACFLKIWDMERDIIPKPR 181
           ALKI + +  G  A+ +A VQFT+T++ E I S+ N RL YG  +L    M+RDIIP+PR
Sbjct: 34  ALKIREIRTGG--ARKYAIVQFTTTRAAEQIISLANPRLWYGHSYLNARPMDRDIIPQPR 91

Query: 182 VSMLNLEATSMHFGNPVSKERFLGLW 259
             +  +E+ ++HFG   SKE+F  +W
Sbjct: 92  SFLHTMESVTLHFGYQTSKEKFSAVW 117


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 38/87 (43%), Positives = 55/87 (63%)
 Frame = +2

Query: 2   ALKIGQSQNKGQKAKSFATVQFTSTKSVEIISSMVNRRLRYGACFLKIWDMERDIIPKPR 181
           ALKI Q +  G   ++FA VQFT +    +I  + N+RL YG  +LK  +ME DI+PKPR
Sbjct: 34  ALKIRQHKKSG---RAFAIVQFTRSSDAGLIIRLANQRLYYGRSYLKAREMETDIVPKPR 90

Query: 182 VSMLNLEATSMHFGNPVSKERFLGLWK 262
           V +  +E  +++F   VS+E+F  LWK
Sbjct: 91  VFLHTMERVTVNFDCHVSEEKFYVLWK 117


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1125

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
 Frame = +2

Query: 29  KGQKAKSFATVQFTSTKSVEIISSMVN---RRLRYGACFLKIWDMERDIIPKPRVSMLNL 199
           KG+  ++FA +QFT+  S   + S  N   R LRYG  +LK  +MERDI+P+PRV + +L
Sbjct: 41  KGRVPRAFAIIQFTTANSATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSL 100

Query: 200 EATSMHFGNPVSKERFLGLWKE 265
           +   + FG  +SK RF  LWK+
Sbjct: 101 DDVKLSFGCQISKGRFSVLWKK 122


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
 Frame = +2

Query: 2   ALKIGQSQNKGQKAKSFATVQFTSTKSV-EIISSMVNRRLRYGACFLKIWDMERDIIPKP 178
           A+K+ Q +  G +   FA VQFT+ +   +II+    RRL YG  +L  +++++DI+PKP
Sbjct: 34  AIKVRQPKKGGPRV--FAIVQFTNERYARQIITGAAERRLYYGRSYLNAFEVDQDIVPKP 91

Query: 179 RVSMLNLEATSMHFGNPVSKERFLGLW 259
           R S+ N+    M+FG  VS ++FL LW
Sbjct: 92  RASLHNISGLKMYFGCQVSTQKFLTLW 118