BLASTX nr result
ID: Cimicifuga21_contig00015749
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00015749
(546 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arab... 122 1e-53
ref|NP_173402.2| pentatricopeptide repeat-containing protein [Ar... 120 1e-53
ref|XP_003574443.1| PREDICTED: pentatricopeptide repeat-containi... 93 3e-32
gb|ABR16216.1| unknown [Picea sitchensis] 97 7e-32
dbj|BAF01011.1| DYW7 protein [Arabidopsis thaliana] 120 5e-31
>ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
lyrata] gi|297338906|gb|EFH69323.1| hypothetical protein
ARALYDRAFT_472198 [Arabidopsis lyrata subsp. lyrata]
Length = 1490
Score = 122 bits (307), Expect(2) = 1e-53
Identities = 53/101 (52%), Positives = 76/101 (75%)
Frame = +2
Query: 218 DIQTGKLIHSFVIRSGLNSYIHVNNSLVSMYAKCLKLSSDRSYFEKTDEKDRVTWNSIIS 397
D++TGKLIHS VI+ G++S + V+NS++++YAKC + +F + E+D V WNS++
Sbjct: 196 DVETGKLIHSVVIKLGMSSCLRVSNSILAVYAKCGEWDFATKFFRRMKERDVVAWNSVLL 255
Query: 398 AYCQTGKNEEALRLFDRMQAEGLEPGLITWNILIASYNQLG 520
AYCQ GK+EEA+ L + M+ EG+ PGL+TWNILI YNQLG
Sbjct: 256 AYCQNGKHEEAVELVEEMEKEGISPGLVTWNILIGGYNQLG 296
Score = 112 bits (280), Expect(2) = 1e-53
Identities = 49/70 (70%), Positives = 58/70 (82%)
Frame = +1
Query: 1 MYAKCGSLEDARRVFDEMRERNLFTWSAMIGGYTREQRWREIIELFVWMMADGVIPDEFL 180
MYAKCG L DAR+VFD MRERNL+TWSAMIG Y+RE RWRE+ +LF MM +GV+PD+FL
Sbjct: 124 MYAKCGCLVDARKVFDSMRERNLYTWSAMIGAYSRENRWREVSKLFRLMMEEGVLPDDFL 183
Query: 181 LPKVLQACTN 210
PK+LQ C N
Sbjct: 184 FPKILQGCAN 193
Score = 92.8 bits (229), Expect(2) = 2e-21
Identities = 45/104 (43%), Positives = 59/104 (56%)
Frame = +2
Query: 221 IQTGKLIHSFVIRSGLNSYIHVNNSLVSMYAKCLKLSSDRSYFEKTDEKDRVTWNSIISA 400
I G +HS ++ G + V NSLV MY+KC KL R F+ KD TWNS+I+
Sbjct: 368 INLGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITG 427
Query: 401 YCQTGKNEEALRLFDRMQAEGLEPGLITWNILIASYNQLGMENE 532
YCQ G +A LF RMQ + P +ITWN +I+ Y + G E E
Sbjct: 428 YCQAGYCGKAYELFTRMQDANVRPNIITWNTMISGYIKNGDEGE 471
Score = 34.7 bits (78), Expect(2) = 2e-21
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 4 YAKCGSLEDARRVFDEMRE----RNLFTWSAMIGGYTREQRWREIIELFVWMMADGVIPD 171
Y + G + A + +M ++FTW+AMI G + +++F M GV+P+
Sbjct: 292 YNQLGKCDAAMDLMQKMENFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPN 351
Query: 172 EFLLPKVLQACT 207
+ + AC+
Sbjct: 352 AVTIMSAVSACS 363
Score = 62.4 bits (150), Expect(2) = 5e-14
Identities = 32/98 (32%), Positives = 54/98 (55%)
Frame = +2
Query: 239 IHSFVIRSGLNSYIHVNNSLVSMYAKCLKLSSDRSYFEKTDEKDRVTWNSIISAYCQTGK 418
IH V+R L++ V N+L YAK + ++ F + KD +TWNS+I Y G
Sbjct: 546 IHGCVLRRNLDAIHAVKNALTDTYAKSGDIGYSKTIFMGMETKDIITWNSLIGGYVLHGS 605
Query: 419 NEEALRLFDRMQAEGLEPGLITWNILIASYNQLGMENE 532
AL LF++M+ +G++P T + +I ++ +G +E
Sbjct: 606 YGPALELFNQMKTQGIKPNRGTLSSIILAHGLMGNVDE 643
Score = 40.0 bits (92), Expect(2) = 5e-14
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 4 YAKCGSLEDARRVFDEMR-----ERNLFTWSAMIGGYTREQRWREIIELFVWMMADGVIP 168
Y K G +A +F M +RN TW+ +I GY + + + +E+F M +P
Sbjct: 463 YIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDDALEIFRKMQFSRFMP 522
Query: 169 DEFLLPKVLQACTNIL 216
+ + +L AC N+L
Sbjct: 523 NSVTILSLLPACANLL 538
Score = 56.6 bits (135), Expect(2) = 2e-13
Identities = 25/57 (43%), Positives = 38/57 (66%)
Frame = +1
Query: 1 MYAKCGSLEDARRVFDEMRERNLFTWSAMIGGYTREQRWREIIELFVWMMADGVIPD 171
MY+KCG LEDAR+VFD ++ ++++TW++MI GY + + ELF M V P+
Sbjct: 396 MYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANVRPN 452
Score = 43.9 bits (102), Expect(2) = 2e-13
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +2
Query: 290 NSLVSMYAKCLKLSSDRSYFEKTDEKDRV-----TWNSIISAYCQTGKNEEALRLFDRMQ 454
N+++S Y K F++ ++ +V TWN II+ Y Q GK ++AL +F +MQ
Sbjct: 457 NTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDDALEIFRKMQ 516
Query: 455 AEGLEPGLIT-WNILIASYNQLG 520
P +T ++L A N LG
Sbjct: 517 FSRFMPNSVTILSLLPACANLLG 539
>ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g19720; AltName: Full=Protein DYW7
gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein
[Arabidopsis thaliana] gi|332191770|gb|AEE29891.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 894
Score = 120 bits (300), Expect(2) = 1e-53
Identities = 51/101 (50%), Positives = 75/101 (74%)
Frame = +2
Query: 218 DIQTGKLIHSFVIRSGLNSYIHVNNSLVSMYAKCLKLSSDRSYFEKTDEKDRVTWNSIIS 397
D++ GK+IHS VI+ G++S + V+NS++++YAKC +L +F + E+D + WNS++
Sbjct: 196 DVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLL 255
Query: 398 AYCQTGKNEEALRLFDRMQAEGLEPGLITWNILIASYNQLG 520
AYCQ GK+EEA+ L M+ EG+ PGL+TWNILI YNQLG
Sbjct: 256 AYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLG 296
Score = 115 bits (287), Expect(2) = 1e-53
Identities = 50/70 (71%), Positives = 58/70 (82%)
Frame = +1
Query: 1 MYAKCGSLEDARRVFDEMRERNLFTWSAMIGGYTREQRWREIIELFVWMMADGVIPDEFL 180
MYAKCG + DAR+VFD MRERNLFTWSAMIG Y+RE RWRE+ +LF MM DGV+PD+FL
Sbjct: 124 MYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFL 183
Query: 181 LPKVLQACTN 210
PK+LQ C N
Sbjct: 184 FPKILQGCAN 193
Score = 94.0 bits (232), Expect(2) = 1e-21
Identities = 46/104 (44%), Positives = 59/104 (56%)
Frame = +2
Query: 221 IQTGKLIHSFVIRSGLNSYIHVNNSLVSMYAKCLKLSSDRSYFEKTDEKDRVTWNSIISA 400
I G +HS ++ G + V NSLV MY+KC KL R F+ KD TWNS+I+
Sbjct: 368 INQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITG 427
Query: 401 YCQTGKNEEALRLFDRMQAEGLEPGLITWNILIASYNQLGMENE 532
YCQ G +A LF RMQ L P +ITWN +I+ Y + G E E
Sbjct: 428 YCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGE 471
Score = 34.3 bits (77), Expect(2) = 1e-21
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 4 YAKCGSLEDARRVFDEMRE----RNLFTWSAMIGGYTREQRWREIIELFVWMMADGVIPD 171
Y + G + A + +M ++FTW+AMI G + +++F M GV+P+
Sbjct: 292 YNQLGKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPN 351
Query: 172 EFLLPKVLQACT 207
+ + AC+
Sbjct: 352 AVTIMSAVSACS 363
Score = 62.0 bits (149), Expect(2) = 2e-14
Identities = 33/98 (33%), Positives = 53/98 (54%)
Frame = +2
Query: 239 IHSFVIRSGLNSYIHVNNSLVSMYAKCLKLSSDRSYFEKTDEKDRVTWNSIISAYCQTGK 418
IH V+R L++ V N+L YAK + R+ F + KD +TWNS+I Y G
Sbjct: 546 IHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGS 605
Query: 419 NEEALRLFDRMQAEGLEPGLITWNILIASYNQLGMENE 532
AL LF++M+ +G+ P T + +I ++ +G +E
Sbjct: 606 YGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDE 643
Score = 42.0 bits (97), Expect(2) = 2e-14
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 4 YAKCGSLEDARRVFDEMR-----ERNLFTWSAMIGGYTREQRWREIIELFVWMMADGVIP 168
Y K G +A +F M +RN TW+ +I GY + + E +ELF M +P
Sbjct: 463 YIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMP 522
Query: 169 DEFLLPKVLQACTNIL 216
+ + +L AC N+L
Sbjct: 523 NSVTILSLLPACANLL 538
Score = 55.5 bits (132), Expect(2) = 1e-13
Identities = 24/57 (42%), Positives = 38/57 (66%)
Frame = +1
Query: 1 MYAKCGSLEDARRVFDEMRERNLFTWSAMIGGYTREQRWREIIELFVWMMADGVIPD 171
MY+KCG LEDAR+VFD ++ ++++TW++MI GY + + ELF M + P+
Sbjct: 396 MYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPN 452
Score = 45.8 bits (107), Expect(2) = 1e-13
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +2
Query: 290 NSLVSMYAKCLKLSSDRSYFEKTDEKDRV-----TWNSIISAYCQTGKNEEALRLFDRMQ 454
N+++S Y K F++ ++ +V TWN II+ Y Q GK +EAL LF +MQ
Sbjct: 457 NTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQ 516
Query: 455 AEGLEPGLIT-WNILIASYNQLG 520
P +T ++L A N LG
Sbjct: 517 FSRFMPNSVTILSLLPACANLLG 539
>ref|XP_003574443.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Brachypodium distachyon]
Length = 859
Score = 92.8 bits (229), Expect(2) = 3e-32
Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 3/104 (2%)
Frame = +2
Query: 218 DIQTGKLIHSFVIRSGL---NSYIHVNNSLVSMYAKCLKLSSDRSYFEKTDEKDRVTWNS 388
D++ G ++HS IR G + V+NS++ MY KC +L R FEK +D TWNS
Sbjct: 163 DLELGTVLHSMAIRRGFMGREKDVPVSNSVLVMYVKCGELGFARVVFEKMGRRDLGTWNS 222
Query: 389 IISAYCQTGKNEEALRLFDRMQAEGLEPGLITWNILIASYNQLG 520
+I C++ K EEA RL D M+ EG+EPG++TWN LI+SY + G
Sbjct: 223 MIFGCCRSCKWEEARRLLDDMRKEGIEPGVVTWNTLISSYARSG 266
Score = 70.9 bits (172), Expect(2) = 3e-32
Identities = 30/67 (44%), Positives = 47/67 (70%)
Frame = +1
Query: 4 YAKCGSLEDARRVFDEMRERNLFTWSAMIGGYTREQRWREIIELFVWMMADGVIPDEFLL 183
++ G L+DAR+VFD M ++L WS+MIG Y + E++ L V M+++GV+PD FL+
Sbjct: 92 HSSAGRLDDARKVFDGMSHKDLLAWSSMIGAYATRGMFDEVLVLAVKMVSEGVLPDRFLI 151
Query: 184 PKVLQAC 204
++LQAC
Sbjct: 152 TRILQAC 158
Score = 70.9 bits (172), Expect = 1e-10
Identities = 35/100 (35%), Positives = 54/100 (54%)
Frame = +2
Query: 221 IQTGKLIHSFVIRSGLNSYIHVNNSLVSMYAKCLKLSSDRSYFEKTDEKDRVTWNSIISA 400
+ G ++H I+ G + NSLV MYAKC + + F + EKD +WNS+++
Sbjct: 338 LNQGSMLHCHAIKVGSVKNVLSGNSLVDMYAKCGETVAASRIFNQIPEKDIFSWNSMVAG 397
Query: 401 YCQTGKNEEALRLFDRMQAEGLEPGLITWNILIASYNQLG 520
Y Q G +A LF +M+ G+ ITWN +I+ Y + G
Sbjct: 398 YAQAGYCGKAYELFCKMENYGIRRNAITWNTMISGYIRNG 437
>gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 97.1 bits (240), Expect(2) = 7e-32
Identities = 46/101 (45%), Positives = 66/101 (65%)
Frame = +2
Query: 218 DIQTGKLIHSFVIRSGLNSYIHVNNSLVSMYAKCLKLSSDRSYFEKTDEKDRVTWNSIIS 397
D+Q GK IH ++IR GL+ I V N+L+ MYAKC + S + F+K ++D V+WN I+
Sbjct: 229 DLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAIA 288
Query: 398 AYCQTGKNEEALRLFDRMQAEGLEPGLITWNILIASYNQLG 520
Y Q G+ +E + LF +MQ GL+ +ITWN LI +Y Q G
Sbjct: 289 GYAQNGRFDECMELFRKMQCAGLKIDVITWNTLITAYAQNG 329
Score = 65.5 bits (158), Expect(2) = 7e-32
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +1
Query: 1 MYAKCGSLEDARRVFDEMRERNLFTWSAMIGGYTREQRWREIIELFVWMMADGVIPDEFL 180
M+ KCGS+EDARRVFD+M ERNL +W+AM+ GY + E + +F M + V +
Sbjct: 157 MFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVT 216
Query: 181 LPKVLQACTNI 213
+ VL AC +
Sbjct: 217 VASVLPACAQL 227
Score = 67.8 bits (164), Expect(2) = 1e-22
Identities = 33/99 (33%), Positives = 57/99 (57%)
Frame = +2
Query: 221 IQTGKLIHSFVIRSGLNSYIHVNNSLVSMYAKCLKLSSDRSYFEKTDEKDRVTWNSIISA 400
+ GKLI+ +I G + V N+L++M+ KC + R F+K E++ V+W +++S
Sbjct: 129 LSEGKLIYDEIISKGCEMDVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSG 188
Query: 401 YCQTGKNEEALRLFDRMQAEGLEPGLITWNILIASYNQL 517
Y Q G +EALR+F MQ E ++ +T ++ + QL
Sbjct: 189 YAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQL 227
Score = 63.5 bits (153), Expect(2) = 1e-22
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 MYAKCGSLEDARRVFDEMRERNLFTWSAMIGGYTREQRWREIIELFVWMM-ADGVIPDEF 177
+Y KCGSL DAR FD M + ++F W+ MIGGY + RE +EL+ M PD +
Sbjct: 55 LYVKCGSLPDARLAFDNMTKGDVFPWNVMIGGYVKHGETREALELYHQMQKVSSTNPDNY 114
Query: 178 LLPKVLQACTNI 213
VL AC +
Sbjct: 115 TYSSVLNACARL 126
Score = 55.1 bits (131), Expect = 7e-06
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +1
Query: 1 MYAKCGSLEDARRVFDEMRERNLFTWSAMIGGYTREQRWREIIELFVWMMADGV 162
MYAKCGS+ A++VFD+M +R++ +W+ I GY + R+ E +ELF M G+
Sbjct: 258 MYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFRKMQCAGL 311
>dbj|BAF01011.1| DYW7 protein [Arabidopsis thaliana]
Length = 328
Score = 120 bits (300), Expect(2) = 5e-31
Identities = 51/101 (50%), Positives = 75/101 (74%)
Frame = +2
Query: 218 DIQTGKLIHSFVIRSGLNSYIHVNNSLVSMYAKCLKLSSDRSYFEKTDEKDRVTWNSIIS 397
D++ GK+IHS VI+ G++S + V+NS++++YAKC +L +F + E+D + WNS++
Sbjct: 25 DVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLL 84
Query: 398 AYCQTGKNEEALRLFDRMQAEGLEPGLITWNILIASYNQLG 520
AYCQ GK+EEA+ L M+ EG+ PGL+TWNILI YNQLG
Sbjct: 85 AYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLG 125
Score = 39.7 bits (91), Expect(2) = 5e-31
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 145 MMADGVIPDEFLLPKVLQACTN 210
MM DGV+PD+FL PK+LQ C N
Sbjct: 1 MMKDGVLPDDFLFPKILQGCAN 22
Score = 94.0 bits (232), Expect(2) = 1e-21
Identities = 46/104 (44%), Positives = 59/104 (56%)
Frame = +2
Query: 221 IQTGKLIHSFVIRSGLNSYIHVNNSLVSMYAKCLKLSSDRSYFEKTDEKDRVTWNSIISA 400
I G +HS ++ G + V NSLV MY+KC KL R F+ KD TWNS+I+
Sbjct: 197 INQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITG 256
Query: 401 YCQTGKNEEALRLFDRMQAEGLEPGLITWNILIASYNQLGMENE 532
YCQ G +A LF RMQ L P +ITWN +I+ Y + G E E
Sbjct: 257 YCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGE 300
Score = 34.3 bits (77), Expect(2) = 1e-21
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 4 YAKCGSLEDARRVFDEMRE----RNLFTWSAMIGGYTREQRWREIIELFVWMMADGVIPD 171
Y + G + A + +M ++FTW+AMI G + +++F M GV+P+
Sbjct: 121 YNQLGKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPN 180
Query: 172 EFLLPKVLQACT 207
+ + AC+
Sbjct: 181 AVTIMSAVSACS 192
Score = 55.5 bits (132), Expect = 5e-06
Identities = 24/57 (42%), Positives = 38/57 (66%)
Frame = +1
Query: 1 MYAKCGSLEDARRVFDEMRERNLFTWSAMIGGYTREQRWREIIELFVWMMADGVIPD 171
MY+KCG LEDAR+VFD ++ ++++TW++MI GY + + ELF M + P+
Sbjct: 225 MYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPN 281