BLASTX nr result

ID: Cimicifuga21_contig00015698 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00015698
         (1143 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR18062.1| unknown [Picea sitchensis]                             267   3e-69
ref|XP_004136028.1| PREDICTED: pre-mRNA-splicing factor SF2-like...   266   7e-69
ref|XP_002318990.1| predicted protein [Populus trichocarpa] gi|2...   261   2e-67
emb|CBI39508.3| unnamed protein product [Vitis vinifera]              261   2e-67
ref|XP_002283865.1| PREDICTED: pre-mRNA-splicing factor SF2-like...   261   2e-67

>gb|ABR18062.1| unknown [Picea sitchensis]
          Length = 331

 Score =  267 bits (683), Expect = 3e-69
 Identities = 130/176 (73%), Positives = 142/176 (80%)
 Frame = -1

Query: 1143 VEDLFYKYGPLVDIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYNFDGHRLRVELAHG 964
            VEDLFYKYGP+VDIDLK+PPRPPGY F+EFEDA+DAEDAIRGRDGYNFDG+RLRVELAHG
Sbjct: 23   VEDLFYKYGPIVDIDLKIPPRPPGYCFIEFEDARDAEDAIRGRDGYNFDGNRLRVELAHG 82

Query: 963  GRGQMSSTDXXXXXXXXXXXXXXXXXXXXXXXXXXRHSDYRVLVTGLPQSASWQDLKDHM 784
            GRGQ S+ D                            S+YRVLV+GLP SASWQDLKDHM
Sbjct: 83   GRGQSSTNDRYSSYSSAGGRSGGVSR----------RSEYRVLVSGLPSSASWQDLKDHM 132

Query: 783  RRAGDVCFSQVFRDASGTTGIVDYTNYDDMKYAVKKLDDSEFRNAFTRSYIRVKVY 616
            RRAGDVCFSQVFRD+SGTTGIVDYTNYDDMKYA++KLDDSEFRNAF+R YIRVK Y
Sbjct: 133  RRAGDVCFSQVFRDSSGTTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRGYIRVKEY 188


>ref|XP_004136028.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
            gi|449498497|ref|XP_004160553.1| PREDICTED:
            pre-mRNA-splicing factor SF2-like [Cucumis sativus]
          Length = 309

 Score =  266 bits (680), Expect = 7e-69
 Identities = 131/177 (74%), Positives = 140/177 (79%)
 Frame = -1

Query: 1143 VEDLFYKYGPLVDIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYNFDGHRLRVELAHG 964
            VEDLFYKYG +  IDLKVPPRPPGYAFVEFEDA+DA+DAIRGRDGY+FDGHRLRVELAHG
Sbjct: 23   VEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQDAIRGRDGYDFDGHRLRVELAHG 82

Query: 963  GRGQMSSTDXXXXXXXXXXXXXXXXXXXXXXXXXXRHSDYRVLVTGLPQSASWQDLKDHM 784
            GRG  SS D                            SDYRVLVTGLP SASWQDLKDHM
Sbjct: 83   GRGHSSSNDRYSSHGGSRGGRGVSR-----------RSDYRVLVTGLPSSASWQDLKDHM 131

Query: 783  RRAGDVCFSQVFRDASGTTGIVDYTNYDDMKYAVKKLDDSEFRNAFTRSYIRVKVYD 613
            RRAGDVCFSQVFRD SGTTGIVDYTNYDDMKYA+KKLDDSEFRNAF+R+Y+RV+ YD
Sbjct: 132  RRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAYVRVREYD 188


>ref|XP_002318990.1| predicted protein [Populus trichocarpa] gi|222857366|gb|EEE94913.1|
            predicted protein [Populus trichocarpa]
          Length = 224

 Score =  261 bits (668), Expect = 2e-67
 Identities = 130/177 (73%), Positives = 138/177 (77%)
 Frame = -1

Query: 1143 VEDLFYKYGPLVDIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYNFDGHRLRVELAHG 964
            VEDLFYKYGP+VDIDLK+PPRPPGYAFVEFE+A+DAEDAIRGRDGYNFDG RLRVELAHG
Sbjct: 22   VEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYNFDGCRLRVELAHG 81

Query: 963  GRGQMSSTDXXXXXXXXXXXXXXXXXXXXXXXXXXRHSDYRVLVTGLPQSASWQDLKDHM 784
            GR   S  D                            SDYRVLVTGLP SASWQDLKDHM
Sbjct: 82   GRRHSSPVDHYSSYSGSSGSRGPSK-----------RSDYRVLVTGLPSSASWQDLKDHM 130

Query: 783  RRAGDVCFSQVFRDASGTTGIVDYTNYDDMKYAVKKLDDSEFRNAFTRSYIRVKVYD 613
            RRAGDVCFSQVFRD  G TGIVDYTNYDDMKYA+KKLDDSEFRNAF+R+YIRV+ YD
Sbjct: 131  RRAGDVCFSQVFRDRGGMTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAYIRVREYD 187


>emb|CBI39508.3| unnamed protein product [Vitis vinifera]
          Length = 249

 Score =  261 bits (667), Expect = 2e-67
 Identities = 128/177 (72%), Positives = 139/177 (78%)
 Frame = -1

Query: 1143 VEDLFYKYGPLVDIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYNFDGHRLRVELAHG 964
            VEDLFYKYGP+VDIDLK+PPRPPGYAFVEFEDA+DAEDAI GRDGYNFDGHRLRVELAHG
Sbjct: 23   VEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYGRDGYNFDGHRLRVELAHG 82

Query: 963  GRGQMSSTDXXXXXXXXXXXXXXXXXXXXXXXXXXRHSDYRVLVTGLPQSASWQDLKDHM 784
            GRGQ SS D                           HS+YRVLVTGLP SASWQDLKDHM
Sbjct: 83   GRGQSSSVDHYSSYSSSSRGGLSR------------HSEYRVLVTGLPYSASWQDLKDHM 130

Query: 783  RRAGDVCFSQVFRDASGTTGIVDYTNYDDMKYAVKKLDDSEFRNAFTRSYIRVKVYD 613
            RRAGDVCFSQVFR   G TGIVDYTNYDDMKYA++KLDDS F+N F+R+YIRV+ Y+
Sbjct: 131  RRAGDVCFSQVFRGRGGMTGIVDYTNYDDMKYAIRKLDDSLFKNQFSRAYIRVREYE 187


>ref|XP_002283865.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Vitis vinifera]
          Length = 288

 Score =  261 bits (667), Expect = 2e-67
 Identities = 128/177 (72%), Positives = 139/177 (78%)
 Frame = -1

Query: 1143 VEDLFYKYGPLVDIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYNFDGHRLRVELAHG 964
            VEDLFYKYGP+VDIDLK+PPRPPGYAFVEFEDA+DAEDAI GRDGYNFDGHRLRVELAHG
Sbjct: 23   VEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYGRDGYNFDGHRLRVELAHG 82

Query: 963  GRGQMSSTDXXXXXXXXXXXXXXXXXXXXXXXXXXRHSDYRVLVTGLPQSASWQDLKDHM 784
            GRGQ SS D                           HS+YRVLVTGLP SASWQDLKDHM
Sbjct: 83   GRGQSSSVDHYSSYSSSSRGGLSR------------HSEYRVLVTGLPYSASWQDLKDHM 130

Query: 783  RRAGDVCFSQVFRDASGTTGIVDYTNYDDMKYAVKKLDDSEFRNAFTRSYIRVKVYD 613
            RRAGDVCFSQVFR   G TGIVDYTNYDDMKYA++KLDDS F+N F+R+YIRV+ Y+
Sbjct: 131  RRAGDVCFSQVFRGRGGMTGIVDYTNYDDMKYAIRKLDDSLFKNQFSRAYIRVREYE 187


Top