BLASTX nr result

ID: Cimicifuga21_contig00015587 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00015587
         (658 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002313030.1| predicted protein [Populus trichocarpa] gi|2...    73   5e-11
ref|XP_002512953.1| conserved hypothetical protein [Ricinus comm...    62   7e-08
ref|XP_002283540.1| PREDICTED: uncharacterized protein LOC100248...    59   1e-06
ref|XP_002868885.1| predicted protein [Arabidopsis lyrata subsp....    57   3e-06
gb|ADD09610.1| unknown [Trifolium repens]                              56   5e-06

>ref|XP_002313030.1| predicted protein [Populus trichocarpa] gi|222849438|gb|EEE86985.1|
           predicted protein [Populus trichocarpa]
          Length = 92

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 42/83 (50%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
 Frame = +2

Query: 341 FDMDELRANLPQKRKGLSSFYSGKSQSFTCLENVHCLEDL-XXXXXXXXXXXXYSH---- 505
           FDMD LR NLPQKR GLS +YSGK++SFTC+ +V CLEDL             YS     
Sbjct: 10  FDMDALRTNLPQKRGGLSRYYSGKARSFTCIADVRCLEDLKKPERPDPKKRQKYSDRNGL 69

Query: 506 --TPLPCRRKISNSTHLAAPFVG 568
              P PCRR +S+ST   +P VG
Sbjct: 70  HVPPYPCRR-VSSSTQCFSPCVG 91


>ref|XP_002512953.1| conserved hypothetical protein [Ricinus communis]
           gi|223547964|gb|EEF49456.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 129

 Score = 62.4 bits (150), Expect = 7e-08
 Identities = 36/69 (52%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
 Frame = +2

Query: 341 FDMDELRANLPQKRKGLSSFYSGKSQSFTCLENVHCLEDL-XXXXXXXXXXXXYSH---- 505
           FDM+ LR NLP+KR GLS +YSGKS+SFTC+ +VHCLEDL             YS     
Sbjct: 10  FDMNALRNNLPKKR-GLSRYYSGKSRSFTCMADVHCLEDLKKKEHPDAKKRKKYSERRDL 68

Query: 506 --TPLPCRR 526
              P PCRR
Sbjct: 69  HVPPYPCRR 77


>ref|XP_002283540.1| PREDICTED: uncharacterized protein LOC100248701 [Vitis vinifera]
           gi|297744434|emb|CBI37696.3| unnamed protein product
           [Vitis vinifera]
          Length = 91

 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 28/40 (70%), Positives = 33/40 (82%)
 Frame = +2

Query: 341 FDMDELRANLPQKRKGLSSFYSGKSQSFTCLENVHCLEDL 460
           FDM  LR NLPQKR GLS +YSGK++SFT + +VHCLEDL
Sbjct: 10  FDMGALRTNLPQKR-GLSRYYSGKARSFTSIADVHCLEDL 48


>ref|XP_002868885.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297314721|gb|EFH45144.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 108

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = +2

Query: 341 FDMDELRANLPQKRKGLSSFYSGKSQSFTCLENVHCLEDL 460
           FDM ELR NLP+KR GLS +YSGK++SF C+ +V CLEDL
Sbjct: 9   FDMGELRNNLPKKR-GLSRYYSGKARSFICISDVKCLEDL 47


>gb|ADD09610.1| unknown [Trifolium repens]
          Length = 93

 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 35/83 (42%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
 Frame = +2

Query: 341 FDMDELRANLPQKRKGLSSFYSGKSQSFTCLENVHCLEDL-XXXXXXXXXXXXYSH---- 505
           F+M  L  +  QKR GLS +YSGK++SF C+E+VH +EDL              SH    
Sbjct: 10  FNMGSLGTSFSQKRGGLSRYYSGKARSFVCMEDVHSVEDLKKPKHPDAKKRKKQSHRNEF 69

Query: 506 ---TPLPCRRKISNSTHLAAPFV 565
               P PCRR  S  T L  PFV
Sbjct: 70  INLNPYPCRRAPS-CTQLTTPFV 91


Top