BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00015460
         (867 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28722.3| unnamed protein product [Vitis vinifera]              397   e-108
ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containi...   397   e-108
ref|NP_171809.1| pentatricopeptide repeat-containing protein [Ar...   347   2e-93
ref|XP_004146992.1| PREDICTED: pentatricopeptide repeat-containi...   346   3e-93
ref|XP_002524751.1| pentatricopeptide repeat-containing protein,...   342   5e-92

>emb|CBI28722.3| unnamed protein product [Vitis vinifera]
          Length = 1361

 Score =  397 bits (1019), Expect = e-108
 Identities = 197/289 (68%), Positives = 242/289 (83%)
 Frame = +1

Query: 1    LITMAHIYERNGHRNELKKLKRHIDEACSLGDLQFQQFYNCLLSCHLNFGDLDSASQMVL 180
            LI MAHIYERNG R +L+KLKRHIDEA +L D+QF+QFYNCLL+CHL FGDLDSAS MVL
Sbjct: 864  LIIMAHIYERNGRREDLRKLKRHIDEAHNLSDIQFRQFYNCLLTCHLKFGDLDSASHMVL 923

Query: 181  EMLSKAKKANYSLAAATVVLEAAGTGKFSFPKEKSGEACGLGKSDVLQLPRSVGKSKFSF 360
            EML KA++A  SL+AAT++ EA G+G  S  ++ S ++    KSD L+  R       S+
Sbjct: 924  EMLRKAREARNSLSAATLMFEAVGSGNTSTQEQVSEKSLSHRKSDGLENARPNTSLSISY 983

Query: 361  EEFCRDRNFVDLEVEAKETLDALLAKLQMRVELVTSERGILHPTEKIYAKLVKSFLEAGK 540
            EEF RDRNF+ LE EAKE LD LLAKLQM+VE +T+ERGIL PTE+IY KLVK+FLEAGK
Sbjct: 984  EEFSRDRNFLKLEAEAKEILDRLLAKLQMQVEFITTERGILQPTERIYVKLVKAFLEAGK 1043

Query: 541  VKELAEFLVKADREDTPVATENSAVVHVISACISLGWLDQAHDLIDEMRFAGIKTGSTVY 720
             K+LAEFL+KA++ED+PV+T+NSA+VHVI++CI LGWLDQAHDL+DEMR AG++TGS+VY
Sbjct: 1044 TKQLAEFLIKAEKEDSPVSTDNSALVHVINSCILLGWLDQAHDLLDEMRLAGVRTGSSVY 1103

Query: 721  SALLKAYCKENKPVEISTLLRDSRKAGIQLDSSCYEALIQSRVLQKDNQ 867
            S+LLKAYCK N+  EI++LLRD+RKAG+QLDSSCYEALIQSRVLQKD +
Sbjct: 1104 SSLLKAYCKANRAGEITSLLRDARKAGVQLDSSCYEALIQSRVLQKDTE 1152


>ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
            mitochondrial-like [Vitis vinifera]
          Length = 784

 Score =  397 bits (1019), Expect = e-108
 Identities = 197/289 (68%), Positives = 242/289 (83%)
 Frame = +1

Query: 1    LITMAHIYERNGHRNELKKLKRHIDEACSLGDLQFQQFYNCLLSCHLNFGDLDSASQMVL 180
            LI MAHIYERNG R +L+KLKRHIDEA +L D+QF+QFYNCLL+CHL FGDLDSAS MVL
Sbjct: 287  LIIMAHIYERNGRREDLRKLKRHIDEAHNLSDIQFRQFYNCLLTCHLKFGDLDSASHMVL 346

Query: 181  EMLSKAKKANYSLAAATVVLEAAGTGKFSFPKEKSGEACGLGKSDVLQLPRSVGKSKFSF 360
            EML KA++A  SL+AAT++ EA G+G  S  ++ S ++    KSD L+  R       S+
Sbjct: 347  EMLRKAREARNSLSAATLMFEAVGSGNTSTQEQVSEKSLSHRKSDGLENARPNTSLSISY 406

Query: 361  EEFCRDRNFVDLEVEAKETLDALLAKLQMRVELVTSERGILHPTEKIYAKLVKSFLEAGK 540
            EEF RDRNF+ LE EAKE LD LLAKLQM+VE +T+ERGIL PTE+IY KLVK+FLEAGK
Sbjct: 407  EEFSRDRNFLKLEAEAKEILDRLLAKLQMQVEFITTERGILQPTERIYVKLVKAFLEAGK 466

Query: 541  VKELAEFLVKADREDTPVATENSAVVHVISACISLGWLDQAHDLIDEMRFAGIKTGSTVY 720
             K+LAEFL+KA++ED+PV+T+NSA+VHVI++CI LGWLDQAHDL+DEMR AG++TGS+VY
Sbjct: 467  TKQLAEFLIKAEKEDSPVSTDNSALVHVINSCILLGWLDQAHDLLDEMRLAGVRTGSSVY 526

Query: 721  SALLKAYCKENKPVEISTLLRDSRKAGIQLDSSCYEALIQSRVLQKDNQ 867
            S+LLKAYCK N+  EI++LLRD+RKAG+QLDSSCYEALIQSRVLQKD +
Sbjct: 527  SSLLKAYCKANRAGEITSLLRDARKAGVQLDSSCYEALIQSRVLQKDTE 575


>ref|NP_171809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75200246|sp|Q9SA60.1|PPR6_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At1g03100, mitochondrial; Flags: Precursor
            gi|4587568|gb|AAD25799.1|AC006550_7 Contains PF|00637
            Clathrin 7-fold repeat. EST gb|AA721862 comes from this
            gene [Arabidopsis thaliana] gi|44917465|gb|AAS49057.1|
            At1g03100 [Arabidopsis thaliana]
            gi|332189408|gb|AEE27529.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 793

 Score =  347 bits (891), Expect = 2e-93
 Identities = 174/287 (60%), Positives = 226/287 (78%)
 Frame = +1

Query: 1    LITMAHIYERNGHRNELKKLKRHIDEACSLGDLQFQQFYNCLLSCHLNFGDLDSASQMVL 180
            L+ MAHIYERNG R EL+KL+RHIDEAC+L + QF QFYNCLL CHL FGDL+SAS+MVL
Sbjct: 296  LVIMAHIYERNGRREELRKLQRHIDEACNLNESQFWQFYNCLLMCHLKFGDLESASKMVL 355

Query: 181  EMLSKAKKANYSLAAATVVLEAAGTGKFSFPKEKSGEACGLGKSDVLQLPRSVGKSKFSF 360
            EML + K A  SL AA +  + A  G+  + K  SG+   + + D  +       S   +
Sbjct: 356  EMLRRGKVARNSLGAAILEFDTADDGRL-YTKRVSGKGSEVKEHDNPETRVVSIHSMIPY 414

Query: 361  EEFCRDRNFVDLEVEAKETLDALLAKLQMRVELVTSERGILHPTEKIYAKLVKSFLEAGK 540
            +EF RDR F+ LE EAK+ L ALLAKL ++VEL+TSERG+L PTE+IY KL K+FLE+GK
Sbjct: 415  DEFSRDRKFLKLEAEAKDVLGALLAKLHVQVELITSERGVLQPTEEIYVKLAKAFLESGK 474

Query: 541  VKELAEFLVKADREDTPVATENSAVVHVISACISLGWLDQAHDLIDEMRFAGIKTGSTVY 720
            +KELA+FL+KA+ ED+PV+++NS +++VI+ACISLG LDQAHDL+DEMR AG++TGS+VY
Sbjct: 475  MKELAKFLLKAEHEDSPVSSDNSMLINVINACISLGMLDQAHDLLDEMRMAGVRTGSSVY 534

Query: 721  SALLKAYCKENKPVEISTLLRDSRKAGIQLDSSCYEALIQSRVLQKD 861
            S+LLKAYC  N+  E+++LLRD++KAGIQLDSSCYEALIQS+V+Q D
Sbjct: 535  SSLLKAYCNTNQTREVTSLLRDAQKAGIQLDSSCYEALIQSQVIQND 581


>ref|XP_004146992.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
            mitochondrial-like [Cucumis sativus]
            gi|449503826|ref|XP_004162196.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g03100,
            mitochondrial-like [Cucumis sativus]
          Length = 796

 Score =  346 bits (888), Expect = 3e-93
 Identities = 178/289 (61%), Positives = 226/289 (78%)
 Frame = +1

Query: 1    LITMAHIYERNGHRNELKKLKRHIDEACSLGDLQFQQFYNCLLSCHLNFGDLDSASQMVL 180
            L+ M HIYERNG R ELKKL+RHIDEA +L D+QF+QFY+CLL+CHL FGDL+SAS MVL
Sbjct: 301  LMVMVHIYERNGRREELKKLQRHIDEAHNLSDVQFRQFYSCLLTCHLKFGDLESASNMVL 360

Query: 181  EMLSKAKKANYSLAAATVVLEAAGTGKFSFPKEKSGEACGLGKSDVLQLPRSVGKSKFSF 360
             ML KAK A  S+A AT+    A          K  E   + ++D L+   S GKS F F
Sbjct: 361  GMLRKAKIAKNSVATATLACNTA-ENHIKPSSGKDSEKNFICQNDGLKDKISNGKSIF-F 418

Query: 361  EEFCRDRNFVDLEVEAKETLDALLAKLQMRVELVTSERGILHPTEKIYAKLVKSFLEAGK 540
            ++F  D+NF+ L++EAKE L  LL KLQ++VELVT+ERGIL PTE I  KLV++FLEAGK
Sbjct: 419  DDFVLDKNFLKLDIEAKEILRTLLTKLQLQVELVTTERGILQPTEAILVKLVRAFLEAGK 478

Query: 541  VKELAEFLVKADREDTPVATENSAVVHVISACISLGWLDQAHDLIDEMRFAGIKTGSTVY 720
             K+LA+FL+KA+RE++PV+ ++S +VHVI+ACISLGWLDQAHDL+DEM  AG++TGS+VY
Sbjct: 479  TKDLAQFLIKAEREESPVSNDDSVLVHVINACISLGWLDQAHDLLDEMHLAGVRTGSSVY 538

Query: 721  SALLKAYCKENKPVEISTLLRDSRKAGIQLDSSCYEALIQSRVLQKDNQ 867
             +LLKAYCK N+  E+++LLRD+RKAGIQLDSSCY+ALI SRVLQ DN+
Sbjct: 539  GSLLKAYCKANRTREVASLLRDARKAGIQLDSSCYDALINSRVLQNDNK 587


>ref|XP_002524751.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535935|gb|EEF37594.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 787

 Score =  342 bits (878), Expect = 5e-92
 Identities = 177/289 (61%), Positives = 223/289 (77%)
 Frame = +1

Query: 1    LITMAHIYERNGHRNELKKLKRHIDEACSLGDLQFQQFYNCLLSCHLNFGDLDSASQMVL 180
            LITMAHIYERNG R EL KL+RHIDEA S+ D+Q++QFYNCLLSCHL FGDLDSAS MVL
Sbjct: 293  LITMAHIYERNGRRQELMKLQRHIDEAHSISDIQYRQFYNCLLSCHLKFGDLDSASDMVL 352

Query: 181  EMLSKAKKANYSLAAATVVLEAAGTGKFSFPKEKSGEACGLGKSDVLQLPRSVGKSKFSF 360
            +ML KAK+A  SLAAA  V +A      S  ++ S ++    + D L   R       S 
Sbjct: 353  KMLWKAKEARNSLAAAKFVYQADSK---SSHEQISPDSVNHREPDGLNKSRPNRTPMISH 409

Query: 361  EEFCRDRNFVDLEVEAKETLDALLAKLQMRVELVTSERGILHPTEKIYAKLVKSFLEAGK 540
             EF +DR+F+ L+ EAK  LD+LLAKLQ +VEL+T++RGIL PTEK+Y KLVK+FLE+GK
Sbjct: 410  GEFLKDRDFLKLDAEAKGLLDSLLAKLQTQVELITTDRGILQPTEKVYVKLVKAFLESGK 469

Query: 541  VKELAEFLVKADREDTPVATENSAVVHVISACISLGWLDQAHDLIDEMRFAGIKTGSTVY 720
             KELA FL KA++ED+P + ++S +VHVI++CISL WLDQAHDL+DEMR AG++  S+VY
Sbjct: 470  TKELAAFLYKAEKEDSPSSNDDSPLVHVINSCISLDWLDQAHDLLDEMRVAGVRMSSSVY 529

Query: 721  SALLKAYCKENKPVEISTLLRDSRKAGIQLDSSCYEALIQSRVLQKDNQ 867
            ++LLKAYCK N+  E+  LLRD+RKAGIQLDSSCY ALI+SRVL++D Q
Sbjct: 530  ASLLKAYCKANRAGEVKALLRDARKAGIQLDSSCYGALIKSRVLEEDTQ 578