BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00015376
         (886 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34953.3| unnamed protein product [Vitis vinifera]              103   5e-20
ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vit...   103   5e-20
ref|XP_004141182.1| PREDICTED: DNA repair protein UVH3-like [Cuc...    85   2e-14
dbj|BAB01125.1| unnamed protein product [Arabidopsis thaliana]         83   7e-14
ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana] ...    79   1e-12

>emb|CBI34953.3| unnamed protein product [Vitis vinifera]
          Length = 1449

 Score =  103 bits (257), Expect = 5e-20
 Identities = 87/269 (32%), Positives = 122/269 (45%), Gaps = 39/269 (14%)
 Frame = -3

Query: 836  KEDPAYELTETISSDGSISNDELERHIKKTERLYEVRKSTRSRKDIKYTEDDSETPELSK 657
            +E+P  E++ T SSD +  N+E E   +K +   EVR+S R RK + Y  DD E  +  K
Sbjct: 1190 QENPGSEISGTSSSDCNSGNEE-EVPAQKLDGSNEVRRSKRPRKAVNYANDDLEIDDEGK 1248

Query: 656  SEDHSNSKGMDGE-MEQEPVCSEGICKDPAYNLSEKDRHHI-----------DYLEMGGG 513
            S D  N K  + E +E EP   + IC D A + S K++              DY E  G 
Sbjct: 1249 SLDQGNQKCTNEEAVELEPSRDQIICGDAAADFSGKNQQKAEDSSPGEDLCGDYPETEGV 1308

Query: 512  FCLDEEKEESDRVHLVSTSTKDGFSGDYLEMGGGFCVDEGEADKDEPVQ---PLSSPTRV 342
             C+DE +           +  D FS DYL+MGGGFCV+E E DKD   +   P  + T +
Sbjct: 1309 MCMDENEIGQLDSRDDDPTFADEFSEDYLKMGGGFCVEEDEKDKDHNARTYDPAKADT-I 1367

Query: 341  FDEVVTERRIDSLP-----------------------TNLSLD-PPSCIGIPEANNVGVL 234
            ++    E  +   P                       T L+LD P + IG+    N G  
Sbjct: 1368 YENPDPESELAIHPAESVSSLQNTAGGFQSEPTCQPDTELNLDCPNATIGLSMPENTG-- 1425

Query: 233  QEDALPKADSSTNSTTGLTAIPFLRRKRR 147
                    D+ TN+   L A+PFLR+KRR
Sbjct: 1426 -------DDTGTNTVKALRAMPFLRKKRR 1447


>ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vitis vinifera]
          Length = 1513

 Score =  103 bits (257), Expect = 5e-20
 Identities = 87/269 (32%), Positives = 122/269 (45%), Gaps = 39/269 (14%)
 Frame = -3

Query: 836  KEDPAYELTETISSDGSISNDELERHIKKTERLYEVRKSTRSRKDIKYTEDDSETPELSK 657
            +E+P  E++ T SSD +  N+E E   +K +   EVR+S R RK + Y  DD E  +  K
Sbjct: 1254 QENPGSEISGTSSSDCNSGNEE-EVPAQKLDGSNEVRRSKRPRKAVNYANDDLEIDDEGK 1312

Query: 656  SEDHSNSKGMDGE-MEQEPVCSEGICKDPAYNLSEKDRHHI-----------DYLEMGGG 513
            S D  N K  + E +E EP   + IC D A + S K++              DY E  G 
Sbjct: 1313 SLDQGNQKCTNEEAVELEPSRDQIICGDAAADFSGKNQQKAEDSSPGEDLCGDYPETEGV 1372

Query: 512  FCLDEEKEESDRVHLVSTSTKDGFSGDYLEMGGGFCVDEGEADKDEPVQ---PLSSPTRV 342
             C+DE +           +  D FS DYL+MGGGFCV+E E DKD   +   P  + T +
Sbjct: 1373 MCMDENEIGQLDSRDDDPTFADEFSEDYLKMGGGFCVEEDEKDKDHNARTYDPAKADT-I 1431

Query: 341  FDEVVTERRIDSLP-----------------------TNLSLD-PPSCIGIPEANNVGVL 234
            ++    E  +   P                       T L+LD P + IG+    N G  
Sbjct: 1432 YENPDPESELAIHPAESVSSLQNTAGGFQSEPTCQPDTELNLDCPNATIGLSMPENTG-- 1489

Query: 233  QEDALPKADSSTNSTTGLTAIPFLRRKRR 147
                    D+ TN+   L A+PFLR+KRR
Sbjct: 1490 -------DDTGTNTVKALRAMPFLRKKRR 1511


>ref|XP_004141182.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus]
            gi|449489542|ref|XP_004158342.1| PREDICTED: DNA repair
            protein UVH3-like [Cucumis sativus]
          Length = 1541

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 77/256 (30%), Positives = 110/256 (42%), Gaps = 28/256 (10%)
 Frame = -3

Query: 827  PAYELTETISSDGSISNDELERHIKKTERLYEVRKSTRSRKDIKYTEDDSETPELSKSED 648
            P  +L ET SSD     D  +  ++  +   E R+S+R RK   Y  DD++ P    ++ 
Sbjct: 1289 PMTDLAETSSSDDDGEFDNQKFDLENLQEPQERRRSSRIRKSASYAIDDADQPSDHSADR 1348

Query: 647  HSNSKGMDGEMEQEPVCSEGICKDPAYNLSEKDRH-----HIDYLEMGGGFCL-DEEKEE 486
             SN K     + Q+           + N     R        DYLE GGGFCL ++EK  
Sbjct: 1349 FSNDKVEKDVVVQDQYTYPKTIISQSQNTESSSRTPKQSLQNDYLETGGGFCLVEDEKSR 1408

Query: 485  SDRVHLVSTSTKDGFSGDYLEMGGGFCVDEG----------------EADKDE------P 372
             +      ++ +   S DYL +GGGFC+D+                 EA KD+      P
Sbjct: 1409 QEMCQNKDSAMEANNSEDYLTIGGGFCLDDNDECVDPVAHSDQATILEAQKDDFENDLIP 1468

Query: 371  VQPLSSPTRVFDEVVTERRIDSLPTNLSLDPPSCIGIPEANNVGVLQEDALPKADSSTNS 192
             Q   S      E  T+ RI+SL     L   + +    ++ VG   E+  PK  S    
Sbjct: 1469 DQSTFSTEEHIVEKDTDARIESLH---GLGNSNPVSNRNSSQVGENVEEE-PKDRSVRAL 1524

Query: 191  TTGLTAIPFLRRKRRK 144
              GL+A+P LRRKRRK
Sbjct: 1525 GGGLSAMPNLRRKRRK 1540


>dbj|BAB01125.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1522

 Score = 83.2 bits (204), Expect = 7e-14
 Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 4/222 (1%)
 Frame = -3

Query: 797  SDGSISNDELERHIKKTE----RLYEVRKSTRSRKDIKYTEDDSETPELSKSEDHSNSKG 630
            SDGS  +D+ +  + + E     L +VRKSTRSR  + Y+  + +  + S+S + S S+ 
Sbjct: 1331 SDGSSDDDDDDDKVVELEAKPANLQKVRKSTRSRNPVMYSAKEDDELDESRSNEGSPSEN 1390

Query: 629  MDGEMEQEPVCSEGICKDPAYNLSEKDRHHIDYLEMGGGFCLDEEKEESDRVHLVSTSTK 450
                   E V    I  D + + S  D    DY++ GGGFC DE  E  D  HL     +
Sbjct: 1391 F------EEVDEGRIGNDDSVDASINDCPSEDYIQTGGGFCADEADEIGD-AHL-----E 1438

Query: 449  DGFSGDYLEMGGGFCVDEGEADKDEPVQPLSSPTRVFDEVVTERRIDSLPTNLSLDPPSC 270
            D  + DY  +GGGFCVDE E  ++  +   +   ++  E   ++       + SLD    
Sbjct: 1439 DKATDDYRVIGGGFCVDEDETAEENTMDDDAEILKMESEEQRKKGKRRNEEDASLD---- 1494

Query: 269  IGIPEANNVGVLQEDALPKADSSTNSTTGLTAIPFLRRKRRK 144
                   NV +             +S  GL+A+PFL+RK+RK
Sbjct: 1495 ------ENVDI---------HFGNSSAGGLSAMPFLKRKKRK 1521


>ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana]
            gi|56749787|sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA
            repair protein UVH3; AltName: Full=ERCC5 homolog;
            AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3;
            Short=AtXPG; AltName: Full=UV hypersensitive protein 3;
            AltName: Full=XPG homolog gi|13649704|gb|AAK37472.1| UV
            hypersensitive protein [Arabidopsis thaliana]
            gi|332643872|gb|AEE77393.1| DNA repair protein UVH3
            [Arabidopsis thaliana]
          Length = 1479

 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 1/219 (0%)
 Frame = -3

Query: 797  SDGSISNDELERHIKKTE-RLYEVRKSTRSRKDIKYTEDDSETPELSKSEDHSNSKGMDG 621
            SDGS  +D+ +  + + E +   ++KSTRSR  + Y+  + +  + S+S + S S+    
Sbjct: 1291 SDGSSDDDDDDDKVVELEAKPANLQKSTRSRNPVMYSAKEDDELDESRSNEGSPSENF-- 1348

Query: 620  EMEQEPVCSEGICKDPAYNLSEKDRHHIDYLEMGGGFCLDEEKEESDRVHLVSTSTKDGF 441
                E V    I  D + + S  D    DY++ GGGFC DE  E  D  HL     +D  
Sbjct: 1349 ----EEVDEGRIGNDDSVDASINDCPSEDYIQTGGGFCADEADEIGD-AHL-----EDKA 1398

Query: 440  SGDYLEMGGGFCVDEGEADKDEPVQPLSSPTRVFDEVVTERRIDSLPTNLSLDPPSCIGI 261
            + DY  +GGGFCVDE E  ++  +   +   ++  E   ++       + SLD       
Sbjct: 1399 TDDYRVIGGGFCVDEDETAEENTMDDDAEILKMESEEQRKKGKRRNEEDASLD------- 1451

Query: 260  PEANNVGVLQEDALPKADSSTNSTTGLTAIPFLRRKRRK 144
                NV +             +S  GL+A+PFL+RK+RK
Sbjct: 1452 ---ENVDI---------HFGNSSAGGLSAMPFLKRKKRK 1478