BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00015282
         (1146 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284711.1| PREDICTED: sigma factor sigB regulation prot...   342   1e-91
gb|ABK95696.1| unknown [Populus trichocarpa]                          341   2e-91
ref|XP_002308316.1| predicted protein [Populus trichocarpa] gi|2...   338   1e-90
ref|XP_002284715.1| PREDICTED: sigma factor sigB regulation prot...   332   1e-88
ref|XP_002515580.1| sigma factor sigb regulation protein rsbq, p...   327   4e-87

>ref|XP_002284711.1| PREDICTED: sigma factor sigB regulation protein rsbQ isoform 1 [Vitis
            vinifera] gi|297738861|emb|CBI28106.3| unnamed protein
            product [Vitis vinifera]
          Length = 277

 Score =  342 bits (876), Expect = 1e-91
 Identities = 166/270 (61%), Positives = 204/270 (75%)
 Frame = -3

Query: 1021 MVMLDAGLKASMNARIIGSGADTIILAHGFGGDQSIWDEIVPCLAQRYRVIVFDWHFSGA 842
            M++++ GL A+MNAR+IG G + I+LAHGFGGDQS+WD+I P LA+ YRV+VFDW+FSGA
Sbjct: 1    MLVIEKGLSAAMNARMIGFGNEAIVLAHGFGGDQSLWDKITPHLARSYRVLVFDWNFSGA 60

Query: 841  AKDPSAFDPVKYSSLEAFGKDLISLLDEMNLSSSVFVGHSLSGMVGCLASIKRADLFKRL 662
             KDPS +D  KYSS +AF  DLI+LLDE  L +SVFVGHS+SGM+GC+ASIKR +LFKRL
Sbjct: 61   VKDPSLYDSTKYSSYDAFADDLIALLDEFKLLASVFVGHSMSGMIGCIASIKRPELFKRL 120

Query: 661  VLLAASPRYLNAENYEGGFEKPQXXXXXXXXXSDFETWAKCFTSVVVDANDPPLFEKFHK 482
            + +AASPRYLNA NYEGGFE+ +         SDF+ WA  F  + VD NDP   EK  K
Sbjct: 121  IFIAASPRYLNANNYEGGFERSEIEQIFANIESDFDKWASNFAPLAVDVNDPLSVEKVEK 180

Query: 481  SLSSMKPEVALSMAKAIFCSDFRSSLDKVQVPCTIIQMTNDIVVPNSVAYYMEKKIKGKS 302
             +  M+PEVAL +AK +FC D R  LDKV  PCTI+Q TNDIV P SVA YM+KKIKGK+
Sbjct: 181  CIRRMRPEVALPLAKTVFCCDHRDILDKVTTPCTIVQPTNDIVAPISVAEYMQKKIKGKT 240

Query: 301  TVEMIEGDGHFPQLTKVKELLDVLDRTMSL 212
            TVE+I+ DGHFPQLT   +LL VLD  + L
Sbjct: 241  TVEIIDMDGHFPQLTAHLQLLSVLDSVLVL 270


>gb|ABK95696.1| unknown [Populus trichocarpa]
          Length = 278

 Score =  341 bits (875), Expect = 2e-91
 Identities = 168/277 (60%), Positives = 210/277 (75%)
 Frame = -3

Query: 1021 MVMLDAGLKASMNARIIGSGADTIILAHGFGGDQSIWDEIVPCLAQRYRVIVFDWHFSGA 842
            MV+ + GL  ++NAR+ GSG + IILAHGFGGDQS+WD+IVP LA+  RV+VFDW FSGA
Sbjct: 1    MVVPEKGLSGALNARVTGSGNEAIILAHGFGGDQSVWDKIVPRLAKHCRVLVFDWIFSGA 60

Query: 841  AKDPSAFDPVKYSSLEAFGKDLISLLDEMNLSSSVFVGHSLSGMVGCLASIKRADLFKRL 662
             KDP+ FDPVKYSS +AF  DLISL+DE++L SSV VGHS+SGM+GC+ASIKR DLFK+L
Sbjct: 61   IKDPNLFDPVKYSSYDAFANDLISLMDELDLKSSVLVGHSMSGMIGCIASIKRPDLFKKL 120

Query: 661  VLLAASPRYLNAENYEGGFEKPQXXXXXXXXXSDFETWAKCFTSVVVDANDPPLFEKFHK 482
            +L+ ASPRY+NA++YEGGF   +         S++  WA+ F S VVDANDPP  + F K
Sbjct: 121  ILVGASPRYINADDYEGGFSNSEVEDIISNIESNYYNWAQAFASAVVDANDPPSVDMFSK 180

Query: 481  SLSSMKPEVALSMAKAIFCSDFRSSLDKVQVPCTIIQMTNDIVVPNSVAYYMEKKIKGKS 302
             L  M+PE A+ +AK +F  D R  L+KV  PC I+Q T DIVVPNSVAYYM++KIKGKS
Sbjct: 181  CLQRMRPEFAVPVAKTVFYCDERDILEKVLTPCIIVQTTRDIVVPNSVAYYMQEKIKGKS 240

Query: 301  TVEMIEGDGHFPQLTKVKELLDVLDRTMSLDCEERIS 191
            TVE+IE DGHFP LT  ++LLDVL   MSL+  + IS
Sbjct: 241  TVEIIETDGHFPHLTAHQQLLDVLIAAMSLNEPKIIS 277


>ref|XP_002308316.1| predicted protein [Populus trichocarpa] gi|222854292|gb|EEE91839.1|
            predicted protein [Populus trichocarpa]
          Length = 264

 Score =  338 bits (868), Expect = 1e-90
 Identities = 164/264 (62%), Positives = 204/264 (77%)
 Frame = -3

Query: 1021 MVMLDAGLKASMNARIIGSGADTIILAHGFGGDQSIWDEIVPCLAQRYRVIVFDWHFSGA 842
            MV+ + GL  ++NAR+ GSG + IILAHGFGGDQS+WD+IVP LA+  RV+VFDW FSGA
Sbjct: 1    MVVPEKGLSGALNARVTGSGNEAIILAHGFGGDQSVWDKIVPRLAKHCRVLVFDWIFSGA 60

Query: 841  AKDPSAFDPVKYSSLEAFGKDLISLLDEMNLSSSVFVGHSLSGMVGCLASIKRADLFKRL 662
             KDP+ FDPVKYSS +AF  DLISL+DE++L SSV VGHS+SGM+GC+ASIKR DLFK+L
Sbjct: 61   IKDPNLFDPVKYSSYDAFANDLISLMDELDLKSSVLVGHSMSGMIGCIASIKRPDLFKKL 120

Query: 661  VLLAASPRYLNAENYEGGFEKPQXXXXXXXXXSDFETWAKCFTSVVVDANDPPLFEKFHK 482
            +L+ ASPRY+NA++YEGGF   +         S++  WA+ F SVVVDANDPP  + F K
Sbjct: 121  ILVGASPRYINADDYEGGFSNSEVEDIISNIESNYYNWAQAFASVVVDANDPPSVDMFSK 180

Query: 481  SLSSMKPEVALSMAKAIFCSDFRSSLDKVQVPCTIIQMTNDIVVPNSVAYYMEKKIKGKS 302
             L  M+PE A+ +AK +F  D R  L+KV  PC I+Q T DIVVPNSVAYYM++KIKGKS
Sbjct: 181  CLQRMRPEFAVPVAKTVFYCDERDILEKVLTPCIIVQTTRDIVVPNSVAYYMQEKIKGKS 240

Query: 301  TVEMIEGDGHFPQLTKVKELLDVL 230
            TVE+IE DGHFP LT  ++LLDVL
Sbjct: 241  TVEIIETDGHFPHLTAHQQLLDVL 264


>ref|XP_002284715.1| PREDICTED: sigma factor sigB regulation protein rsbQ isoform 2
           [Vitis vinifera]
          Length = 269

 Score =  332 bits (851), Expect = 1e-88
 Identities = 162/259 (62%), Positives = 195/259 (75%)
 Frame = -3

Query: 988 MNARIIGSGADTIILAHGFGGDQSIWDEIVPCLAQRYRVIVFDWHFSGAAKDPSAFDPVK 809
           MNAR+IG G + I+LAHGFGGDQS+WD+I P LA+ YRV+VFDW+FSGA KDPS +D  K
Sbjct: 4   MNARMIGFGNEAIVLAHGFGGDQSLWDKITPHLARSYRVLVFDWNFSGAVKDPSLYDSTK 63

Query: 808 YSSLEAFGKDLISLLDEMNLSSSVFVGHSLSGMVGCLASIKRADLFKRLVLLAASPRYLN 629
           YSS +AF  DLI+LLDE  L +SVFVGHS+SGM+GC+ASIKR +LFKRL+ +AASPRYLN
Sbjct: 64  YSSYDAFADDLIALLDEFKLLASVFVGHSMSGMIGCIASIKRPELFKRLIFIAASPRYLN 123

Query: 628 AENYEGGFEKPQXXXXXXXXXSDFETWAKCFTSVVVDANDPPLFEKFHKSLSSMKPEVAL 449
           A NYEGGFE+ +         SDF+ WA  F  + VD NDP   EK  K +  M+PEVAL
Sbjct: 124 ANNYEGGFERSEIEQIFANIESDFDKWASNFAPLAVDVNDPLSVEKVEKCIRRMRPEVAL 183

Query: 448 SMAKAIFCSDFRSSLDKVQVPCTIIQMTNDIVVPNSVAYYMEKKIKGKSTVEMIEGDGHF 269
            +AK +FC D R  LDKV  PCTI+Q TNDIV P SVA YM+KKIKGK+TVE+I+ DGHF
Sbjct: 184 PLAKTVFCCDHRDILDKVTTPCTIVQPTNDIVAPISVAEYMQKKIKGKTTVEIIDMDGHF 243

Query: 268 PQLTKVKELLDVLDRTMSL 212
           PQLT   +LL VLD  + L
Sbjct: 244 PQLTAHLQLLSVLDSVLVL 262


>ref|XP_002515580.1| sigma factor sigb regulation protein rsbq, putative [Ricinus
            communis] gi|223545524|gb|EEF47029.1| sigma factor sigb
            regulation protein rsbq, putative [Ricinus communis]
          Length = 276

 Score =  327 bits (837), Expect = 4e-87
 Identities = 163/274 (59%), Positives = 206/274 (75%), Gaps = 4/274 (1%)
 Frame = -3

Query: 1021 MVMLDAGLKASMNARIIGSGADTIILAHGFGGDQSIWDEIVPCLAQRYRVIVFDWHFSGA 842
            MVML+ GL  +MNA++IG+G +TI+LAHG+GGDQS WD+IVP LA+ +R++VFDW FSGA
Sbjct: 1    MVMLETGLSTAMNAKVIGTGEETIVLAHGYGGDQSAWDKIVPDLAKYFRILVFDWLFSGA 60

Query: 841  AKDPSAFDPVKYSSLEAFGKDLISLLDEMNLSSS--VFVGHSLSGMVGCLASIKRADLFK 668
             KD   FDP KY+S +AF  DLI LL+EM+L SS  VFVGHS+SGM+GC+ASIKR +LFK
Sbjct: 61   VKDQQLFDPEKYASFDAFADDLICLLEEMSLISSPVVFVGHSMSGMIGCIASIKRPELFK 120

Query: 667  RLVLLAASPRYLNAENYEGGFEKPQXXXXXXXXXSDFETWAKCFTSVVVDA--NDPPLFE 494
            RL+L+ ASPRY+N ++YEGGF+K           S+F+ W   F S+VV A   DP   E
Sbjct: 121  RLILVGASPRYINIDDYEGGFKKTDVDDIISNIESNFQNWTPGFASLVVGAKDKDPDSVE 180

Query: 493  KFHKSLSSMKPEVALSMAKAIFCSDFRSSLDKVQVPCTIIQMTNDIVVPNSVAYYMEKKI 314
            +F K LS+MKPE ALS+AK +F SD R  LDKV  PCTI+Q T D+VVPNSV YYM++KI
Sbjct: 181  QFTKCLSNMKPEHALSVAKTVFYSDEREILDKVSTPCTIVQTTGDLVVPNSVVYYMQEKI 240

Query: 313  KGKSTVEMIEGDGHFPQLTKVKELLDVLDRTMSL 212
            KGKS+VE I+ DGHFP LT  ++LLDVL   + L
Sbjct: 241  KGKSSVEFIDTDGHFPHLTAHQQLLDVLTAVLGL 274