BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00015244
         (878 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   379   e-103
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...   368   1e-99
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   361   1e-97
ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...   356   3e-96
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...   351   1e-94

>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
           gi|223545464|gb|EEF46969.1| RNA-dependent RNA
           polymerase, putative [Ricinus communis]
          Length = 1203

 Score =  379 bits (973), Expect = e-103
 Identities = 177/284 (62%), Positives = 220/284 (77%)
 Frame = +1

Query: 4   VSQVSFGEFDKSVSAKELTDFLEYEIGIIWRCRVKNSWTPPESYPNFEVTNTMDVHKTDD 183
           V+QVSFG FDK V+A++L  +L+ EIG +WRCR+K SWTPPESYPNFE+T+T  + + D 
Sbjct: 12  VTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDTAVIQRVDA 71

Query: 184 YDKVEPHAFVHFASPGAATIAKNAAGRCDLIYNKKSLVVNLGAESSFHTNQKRRKIDPFK 363
           Y +VEPHAFVHFASP +AT AKNAAG C+L +N + + V+LG E+ FH NQ+RR   PFK
Sbjct: 72  YRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRTTIPFK 131

Query: 364 FPDVCVEIGTLISLNEFWFGWKGPSSGVDFVVDPFDGTCKILFTKETAFSFKGTIKQAVL 543
             DV VEIGTL+S +EF  GW+GP SGVDF+VDPFDG CK  FT++TAFSFKGT + AV+
Sbjct: 132 LSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTTEHAVI 191

Query: 544 KCNFKLEFLVREIVEIKQYNDXXXXXXXXXXXXXPHIFYRTADDDIYDSVPYDLLDDEDP 723
           +C+FKLEFLVR+I EIKQY D             P ++YRTADDDI   VP+DLLDD+DP
Sbjct: 192 RCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPFDLLDDDDP 251

Query: 724 WIRTTDFTPSGVIGRSNSYRISISPRFGPKLGKAVTYIKERRIQ 855
           WIRTTDFTPSG IGR NSYR+SI PR G KL +A+ +++ERR+Q
Sbjct: 252 WIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQ 295


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1198

 Score =  368 bits (944), Expect = 1e-99
 Identities = 173/284 (60%), Positives = 217/284 (76%)
 Frame = +1

Query: 4   VSQVSFGEFDKSVSAKELTDFLEYEIGIIWRCRVKNSWTPPESYPNFEVTNTMDVHKTDD 183
           V+QVS G FD  V+AK+L ++LE EIG++WRCR+K SWTPPESYPNFE+T+   + +T+D
Sbjct: 12  VTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITRTED 71

Query: 184 YDKVEPHAFVHFASPGAATIAKNAAGRCDLIYNKKSLVVNLGAESSFHTNQKRRKIDPFK 363
           Y +VEPHAFVHFA P +AT A +AA RC+L  N K L  +LG E+ F  NQ+RRK  PFK
Sbjct: 72  YRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTTPFK 131

Query: 364 FPDVCVEIGTLISLNEFWFGWKGPSSGVDFVVDPFDGTCKILFTKETAFSFKGTIKQAVL 543
              V VEIGTL+S +EF+ GW+GP +GVDF+VDPFDGTC+  F++ TAFSFK T + AV+
Sbjct: 132 LSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEHAVI 191

Query: 544 KCNFKLEFLVREIVEIKQYNDXXXXXXXXXXXXXPHIFYRTADDDIYDSVPYDLLDDEDP 723
           KC+FK+EFLVR+I EIKQY +             P ++YRTADDDI  SVP+DLLDD+DP
Sbjct: 192 KCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDDDDP 251

Query: 724 WIRTTDFTPSGVIGRSNSYRISISPRFGPKLGKAVTYIKERRIQ 855
           WIRTTDFT SG IGR +SYR+SI PR GPKL KAV ++KERR+Q
Sbjct: 252 WIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQ 295


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  361 bits (926), Expect = 1e-97
 Identities = 174/283 (61%), Positives = 217/283 (76%)
 Frame = +1

Query: 4   VSQVSFGEFDKSVSAKELTDFLEYEIGIIWRCRVKNSWTPPESYPNFEVTNTMDVHKTDD 183
           V+Q+S G FD+ V+A ELT +LE  IG + RCR+K S TPPESYP+FE+ +T  + +T+D
Sbjct: 12  VTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDTAKIERTED 71

Query: 184 YDKVEPHAFVHFASPGAATIAKNAAGRCDLIYNKKSLVVNLGAESSFHTNQKRRKIDPFK 363
           Y KVEPHAFVHF SP AAT A +AAG+ +L  + K L V+LG E+ FH NQ+RR   PFK
Sbjct: 72  YKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRTTFPFK 131

Query: 364 FPDVCVEIGTLISLNEFWFGWKGPSSGVDFVVDPFDGTCKILFTKETAFSFKGTIKQAVL 543
           FPDV +EIG L+S +E++ GW+GPSSGVDF+VDPFDGTCK LFTK+TAFSFKG  K AV+
Sbjct: 132 FPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMPKHAVI 191

Query: 544 KCNFKLEFLVREIVEIKQYNDXXXXXXXXXXXXXPHIFYRTADDDIYDSVPYDLLDDEDP 723
           KCNFK+EFLVREI E++Q  D             P ++YRTADDDI ++VP+DLLDD+DP
Sbjct: 192 KCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLLDDDDP 251

Query: 724 WIRTTDFTPSGVIGRSNSYRISISPRFGPKLGKAVTYIKERRI 852
           WIRTTDFT SG IGR NSYRISI PR+G KL KA+ Y++ RR+
Sbjct: 252 WIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRV 294


>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1200

 Score =  356 bits (914), Expect = 3e-96
 Identities = 168/284 (59%), Positives = 213/284 (75%)
 Frame = +1

Query: 4   VSQVSFGEFDKSVSAKELTDFLEYEIGIIWRCRVKNSWTPPESYPNFEVTNTMDVHKTDD 183
           V+QVS G FD  V+AK+L ++L+  IG++WRCR+K SWTPPESYPNFE+T+   + +T+D
Sbjct: 12  VTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDITKIERTED 71

Query: 184 YDKVEPHAFVHFASPGAATIAKNAAGRCDLIYNKKSLVVNLGAESSFHTNQKRRKIDPFK 363
           Y +V PHAFVHFA P +AT+A NA+GRC+L  N K+L V+LG ++ F  NQ+RR   PFK
Sbjct: 72  YRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRTTTPFK 131

Query: 364 FPDVCVEIGTLISLNEFWFGWKGPSSGVDFVVDPFDGTCKILFTKETAFSFKGTIKQAVL 543
             DV  EIG L+S +EF+ GW+GP SGVDF+VDPFDGTCK  F++ TAFS K T + AV+
Sbjct: 132 LSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTSEHAVI 191

Query: 544 KCNFKLEFLVREIVEIKQYNDXXXXXXXXXXXXXPHIFYRTADDDIYDSVPYDLLDDEDP 723
           KC+FK+EFLVR+I EI QY +             P ++YRTADDDI   VP+DLLDD+DP
Sbjct: 192 KCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDDDDP 251

Query: 724 WIRTTDFTPSGVIGRSNSYRISISPRFGPKLGKAVTYIKERRIQ 855
           WIRTTDFT SG IGR +SYR+SI PR G KL KAV Y+KERR+Q
Sbjct: 252 WIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQ 295


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
           gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
           6 [Gossypium hirsutum]
          Length = 1196

 Score =  351 bits (901), Expect = 1e-94
 Identities = 163/283 (57%), Positives = 214/283 (75%)
 Frame = +1

Query: 4   VSQVSFGEFDKSVSAKELTDFLEYEIGIIWRCRVKNSWTPPESYPNFEVTNTMDVHKTDD 183
           V+QVS G FD+ V A++L  +LE E+G++WRCR+K SWTPPESYPNFE+T+T  + + D+
Sbjct: 12  VTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQRKDN 71

Query: 184 YDKVEPHAFVHFASPGAATIAKNAAGRCDLIYNKKSLVVNLGAESSFHTNQKRRKIDPFK 363
           Y KVEPHAFVHFASP A T A +AAGR +L +N + L V+LG E+ ++ N++RR   PFK
Sbjct: 72  YKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDTTPFK 131

Query: 364 FPDVCVEIGTLISLNEFWFGWKGPSSGVDFVVDPFDGTCKILFTKETAFSFKGTIKQAVL 543
            PDV +EIGTL S +EF  GW+GP SGV+F+VDPFD TCK  F+++TAFSFKGT + AV+
Sbjct: 132 LPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNEHAVI 191

Query: 544 KCNFKLEFLVREIVEIKQYNDXXXXXXXXXXXXXPHIFYRTADDDIYDSVPYDLLDDEDP 723
           KC+FK+EFLVREI E+KQY++             P ++YRTADDD   +VP+ LLDD+D 
Sbjct: 192 KCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPFGLLDDDDQ 251

Query: 724 WIRTTDFTPSGVIGRSNSYRISISPRFGPKLGKAVTYIKERRI 852
           WIRTTDFT SG IGR N+YR+ + PR G KL KA+ Y++ERR+
Sbjct: 252 WIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRV 294