BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00015170
         (1397 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [V...   599   e-169
ref|XP_002520343.1| replication factor C / DNA polymerase III ga...   580   e-163
ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-li...   579   e-163
ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-li...   578   e-162
ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-li...   576   e-162

>ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
            gi|302141794|emb|CBI18997.3| unnamed protein product
            [Vitis vinifera]
          Length = 360

 Score =  599 bits (1544), Expect = e-169
 Identities = 304/353 (86%), Positives = 323/353 (91%), Gaps = 1/353 (0%)
 Frame = +1

Query: 76   MEIDSDDQPLTNLSKGKDVIMA-PSDGKATPWVEKFRPQSLADVAAHRDIVDTIDRLTSE 252
            M+ID +D  L   +KGK V++  P D KATPWVEK+RPQSLADVAAHRDIVDTIDRLTSE
Sbjct: 8    MDIDEEDNHLLKANKGKSVVVGGPPDRKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSE 67

Query: 253  NKLPHLLLYGPPGTGKTSTILAVARKIYGANYHNMILELNASDDRGIDVVRQQIQDFAST 432
            N+LPHLLLYGPPGTGKTSTILAVARK+YG  +HNMILELNASDDRGIDVVRQQIQDFAST
Sbjct: 68   NRLPHLLLYGPPGTGKTSTILAVARKLYGEQFHNMILELNASDDRGIDVVRQQIQDFAST 127

Query: 433  QSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSR 612
            QSFSFG KS VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSR
Sbjct: 128  QSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSR 187

Query: 613  CTRFRFAPLDATHVTERLKHVIEAEGLDVDEGGLTTLVRLSNGDMRKALNILQSTHMASP 792
            CTRFRFAPLDA HVTERLKHVI AE LDV E GL  LVRLS+GDMRKALNILQSTHMAS 
Sbjct: 188  CTRFRFAPLDAVHVTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNILQSTHMASQ 247

Query: 793  HITEEAVYLCTGNPMPKDIEQISFWLLNESFTTSLRSISDMKMRKGLALVDIVREVTMFI 972
             ITEEAVYLCTGNP+PKDIEQIS+WLLNESF  S   IS++KMRKGLALVD+VREVTMF+
Sbjct: 248  QITEEAVYLCTGNPLPKDIEQISYWLLNESFAASFDRISEVKMRKGLALVDVVREVTMFV 307

Query: 973  FKIKMPSEVRVQLIKDMADIEYRLSFGCNDKLQLGSLIASFTRARSALVAAAK 1131
            FKIKMPS+VRVQLI D+ADIEYRLSFGCNDKLQLGSLIASFTRAR+ALVAAAK
Sbjct: 308  FKIKMPSDVRVQLINDLADIEYRLSFGCNDKLQLGSLIASFTRARAALVAAAK 360


>ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223540562|gb|EEF42129.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 360

 Score =  580 bits (1495), Expect = e-163
 Identities = 298/356 (83%), Positives = 321/356 (90%), Gaps = 4/356 (1%)
 Frame = +1

Query: 76   MEIDSD----DQPLTNLSKGKDVIMAPSDGKATPWVEKFRPQSLADVAAHRDIVDTIDRL 243
            M+ID D       L+  +KGK+V +   D KATPWVEK+RPQSLADVAAHRDIVDTIDRL
Sbjct: 8    MDIDEDVKEKQNQLSKPNKGKNVFV---DTKATPWVEKYRPQSLADVAAHRDIVDTIDRL 64

Query: 244  TSENKLPHLLLYGPPGTGKTSTILAVARKIYGANYHNMILELNASDDRGIDVVRQQIQDF 423
            T+EN+LPHLLLYGPPGTGKTSTILAVARK+YG  YHNMILELNASDDRGIDVVRQQIQDF
Sbjct: 65   TNENRLPHLLLYGPPGTGKTSTILAVARKLYGVQYHNMILELNASDDRGIDVVRQQIQDF 124

Query: 424  ASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPAL 603
            ASTQSFSF  KS VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPAL
Sbjct: 125  ASTQSFSFDAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPAL 184

Query: 604  QSRCTRFRFAPLDATHVTERLKHVIEAEGLDVDEGGLTTLVRLSNGDMRKALNILQSTHM 783
            QSRCTRFRFAPLD  HVT+RLKHVIEAEGLDV E GL  +VRLSNGDMRKALNILQSTHM
Sbjct: 185  QSRCTRFRFAPLDPIHVTDRLKHVIEAEGLDVPEPGLAAVVRLSNGDMRKALNILQSTHM 244

Query: 784  ASPHITEEAVYLCTGNPMPKDIEQISFWLLNESFTTSLRSISDMKMRKGLALVDIVREVT 963
            AS  ITEEAV+LCTGNP+PKDI+QIS+WLLNESF  S + IS++K +KGLALVDIVREVT
Sbjct: 245  ASQQITEEAVHLCTGNPLPKDIQQISYWLLNESFAESFKRISEIKTKKGLALVDIVREVT 304

Query: 964  MFIFKIKMPSEVRVQLIKDMADIEYRLSFGCNDKLQLGSLIASFTRARSALVAAAK 1131
            MF+FKIKMPS+VRVQLI DMADIEYRLSFGC+DKLQLGSL+ASFT ARSALVAAAK
Sbjct: 305  MFVFKIKMPSDVRVQLINDMADIEYRLSFGCSDKLQLGSLVASFTWARSALVAAAK 360


>ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
          Length = 361

 Score =  579 bits (1493), Expect = e-163
 Identities = 297/361 (82%), Positives = 319/361 (88%), Gaps = 3/361 (0%)
 Frame = +1

Query: 55   MTNFNSPMEIDSDDQPLTNLSKGKDVIMA---PSDGKATPWVEKFRPQSLADVAAHRDIV 225
            M     PM+ID D     +  KGK V+ A   P+ GKA PWVEK+RPQSL DVAAHRDIV
Sbjct: 1    MAQTTHPMDID-DHTYTASPDKGKSVVFAGNPPAAGKAIPWVEKYRPQSLDDVAAHRDIV 59

Query: 226  DTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKIYGANYHNMILELNASDDRGIDVVR 405
            DTIDRLT+EN+LPHLLLYGPPGTGKTSTILAVARK+YG+ Y NMILELNASDDRGIDVVR
Sbjct: 60   DTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVR 119

Query: 406  QQIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVN 585
            QQIQDFASTQS SFGVKS VKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALICNHVN
Sbjct: 120  QQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVN 179

Query: 586  KIIPALQSRCTRFRFAPLDATHVTERLKHVIEAEGLDVDEGGLTTLVRLSNGDMRKALNI 765
            KIIPALQSRCTRFRFAPLDA HVTERLKHVI+AEGLDV++ GL   VRLSNGDMRKALNI
Sbjct: 180  KIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAAFVRLSNGDMRKALNI 239

Query: 766  LQSTHMASPHITEEAVYLCTGNPMPKDIEQISFWLLNESFTTSLRSISDMKMRKGLALVD 945
            LQSTHMAS  ITEEAVYLCTGNP+PKDIE IS+WLLNE F  S + I +MK RKGLAL+D
Sbjct: 240  LQSTHMASQQITEEAVYLCTGNPLPKDIELISYWLLNEQFADSFKRIDEMKTRKGLALID 299

Query: 946  IVREVTMFIFKIKMPSEVRVQLIKDMADIEYRLSFGCNDKLQLGSLIASFTRARSALVAA 1125
            IVREVTMF+FKIKMPS VRVQL+ D+ADIEYRLSFGCNDKLQLGS+IASFTRARSALVAA
Sbjct: 300  IVREVTMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAA 359

Query: 1126 A 1128
            A
Sbjct: 360  A 360


>ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
          Length = 363

 Score =  578 bits (1490), Expect = e-162
 Identities = 297/362 (82%), Positives = 320/362 (88%), Gaps = 4/362 (1%)
 Frame = +1

Query: 55   MTNFNSPMEIDSDDQPLT-NLSKGKDVIMAPSD---GKATPWVEKFRPQSLADVAAHRDI 222
            M   N  M+IDSDD   T    K K V++A +    GKA PWVEK+RP SL DVAAHRDI
Sbjct: 1    MAETNHHMDIDSDDHTYTARPDKAKSVVVASNPAAAGKAIPWVEKYRPLSLDDVAAHRDI 60

Query: 223  VDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKIYGANYHNMILELNASDDRGIDVV 402
            VDTIDRLT+EN+LPHLLLYGPPGTGKTSTILAVARK+YG+ Y NMILELNASDDRGIDVV
Sbjct: 61   VDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVV 120

Query: 403  RQQIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 582
            RQQIQDFASTQS SFGVKS VKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALICNHV
Sbjct: 121  RQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHV 180

Query: 583  NKIIPALQSRCTRFRFAPLDATHVTERLKHVIEAEGLDVDEGGLTTLVRLSNGDMRKALN 762
            NKIIPALQSRCTRFRFAPLDA HVTERLKHVI+AEGLDV++ GL  LVRLSNGDMRKALN
Sbjct: 181  NKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALN 240

Query: 763  ILQSTHMASPHITEEAVYLCTGNPMPKDIEQISFWLLNESFTTSLRSISDMKMRKGLALV 942
            ILQSTHMAS  ITEE VYLCTGNP+PKDIEQIS+WLLNE F  S + I +MK RKGLALV
Sbjct: 241  ILQSTHMASQQITEETVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDEMKTRKGLALV 300

Query: 943  DIVREVTMFIFKIKMPSEVRVQLIKDMADIEYRLSFGCNDKLQLGSLIASFTRARSALVA 1122
            DIVREVT+F+FKIKMPS VRVQL+ D+ADIEYRLSFGCNDKLQLGS+IASF+RARSALVA
Sbjct: 301  DIVREVTLFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFSRARSALVA 360

Query: 1123 AA 1128
            AA
Sbjct: 361  AA 362


>ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
            gi|449499057|ref|XP_004160708.1| PREDICTED: replication
            factor C subunit 5-like [Cucumis sativus]
          Length = 363

 Score =  576 bits (1484), Expect = e-162
 Identities = 296/363 (81%), Positives = 321/363 (88%), Gaps = 4/363 (1%)
 Frame = +1

Query: 55   MTNFNSPMEIDSDD--QPLTNLSKGKDVIM--APSDGKATPWVEKFRPQSLADVAAHRDI 222
            M+   S M+ID D+         KGK+V    A  +GKA PWVEKFRP+SLADVAAHRDI
Sbjct: 1    MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 223  VDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKIYGANYHNMILELNASDDRGIDVV 402
            VDTID+LTSEN+LPHLLLYGPPGTGKTSTILAVARK+YG NYHNMILELNASDDRGIDVV
Sbjct: 61   VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 403  RQQIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 582
            RQQIQDFASTQSFSFG K+ VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121  RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 583  NKIIPALQSRCTRFRFAPLDATHVTERLKHVIEAEGLDVDEGGLTTLVRLSNGDMRKALN 762
            NKIIPALQSRCTRFRFAPLD  HVTERL++VIEAE LDV EGGL  LVRL  GDMRKALN
Sbjct: 181  NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN 240

Query: 763  ILQSTHMASPHITEEAVYLCTGNPMPKDIEQISFWLLNESFTTSLRSISDMKMRKGLALV 942
            ILQSTHMAS HITEEAVYLCTGNPMPKDIEQISFWLLNE F+ S + IS++K RKGLALV
Sbjct: 241  ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 943  DIVREVTMFIFKIKMPSEVRVQLIKDMADIEYRLSFGCNDKLQLGSLIASFTRARSALVA 1122
            DIVREVT+F+FKI+MPS +RVQLI D+ADIEYR++FGCNDKLQLGSLI+SFT ARSALV 
Sbjct: 301  DIVREVTLFVFKIEMPSNIRVQLINDLADIEYRMTFGCNDKLQLGSLISSFTGARSALVG 360

Query: 1123 AAK 1131
            AA+
Sbjct: 361  AAQ 363