BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00015116
         (3036 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264009.1| PREDICTED: replication protein A 70 kDa DNA-...  1079   0.0  
emb|CAN82475.1| hypothetical protein VITISV_038295 [Vitis vinifera]  1074   0.0  
ref|XP_004146122.1| PREDICTED: replication protein A 70 kDa DNA-...   944   0.0  
ref|XP_003533460.1| PREDICTED: replication protein A 70 kDa DNA-...   903   0.0  
ref|XP_002519884.1| replication factor A 1, rfa1, putative [Rici...   899   0.0  

>ref|XP_002264009.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
            [Vitis vinifera]
          Length = 882

 Score = 1079 bits (2791), Expect = 0.0
 Identities = 558/884 (63%), Positives = 668/884 (75%), Gaps = 39/884 (4%)
 Frame = -1

Query: 2769 MAINLTSNAIALICDGEIQGEDVKPVVQVADIKLLSAGQQNNT-ERYRMLLSDGIHTQQG 2593
            M +NLT  AI+++C G+ QG DVKPV+QVADI+L++  QQ+N+ ER+R+LLSDG H QQG
Sbjct: 1    MGVNLTEGAISMLCSGDAQGSDVKPVLQVADIRLVNTQQQSNSNERFRILLSDGCHLQQG 60

Query: 2592 MLATQMNTLVHSGKLQKGSVVQLSQFVSQXXXXXXXXXIVDLNVILEKCDPIGEPKMYGQ 2413
            MLATQ N LV SG+LQKGSVVQL+QFV           I+DL+VILEKCDPIGEPK Y Q
Sbjct: 61   MLATQRNELVKSGRLQKGSVVQLTQFVCNVIKDRMIIIIIDLDVILEKCDPIGEPKQYVQ 120

Query: 2412 GGGGPSNALAPQARTS-------NHAGIASGNPQYYGGSTVSAPLQSAPVPAPNVAGRSA 2254
            GG   +  +AP ARTS       +H G   GNPQ +G S+    L       PN+AG ++
Sbjct: 121  GG--TAGGVAPIARTSAPMPSSVDHPGTVLGNPQSFGNSS----LTGGSAAKPNMAGVAS 174

Query: 2253 LHNPKPDPGSNTQSYGSPFNSNPDTRGFS--------VKAEPGAGHPPSTSLSGSYSDQN 2098
             +            + + F+SNPD+  F+         K +P AG P S + +GSY DQ+
Sbjct: 175  PY------------HANSFSSNPDSGRFAGTNAPPMYSKMQPDAGIPASAASTGSYGDQS 222

Query: 2097 RSYINSKPEAGSRAPVNTYGRPLQPTYQRPPPMYTNRGPVAKNEAPARIIPIAVLNPYQS 1918
              + N+K E  SRAP N   R  Q  YQ+PPPMYTNRGPVA+NEA ARIIPIA LNPYQ 
Sbjct: 223  TGFRNNKVEV-SRAPYNAPARQPQSAYQQPPPMYTNRGPVARNEAAARIIPIAALNPYQG 281

Query: 1917 RWTIKARVTSKKELRHYSNARGDGKVFSFDLLDSDGGEIQVTCFNAVADQFFDIIEAGRV 1738
            RWTIKARVT+K ELRHY+N RGDGKVFSFDLLDSDGGEI+VTCFNAVADQF++ IE G+V
Sbjct: 282  RWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYNQIETGKV 341

Query: 1737 YLISKGMLKPASKNFNRLQNEYEIYLESTSTVQVCLEDDDSIPRQQFHFRSISDIENMEN 1558
            YLISKG LKPA K FN L+N++EI+LESTST+Q C +DD+SIPRQQFHFRSISD+E+MEN
Sbjct: 342  YLISKGSLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDDNSIPRQQFHFRSISDVESMEN 401

Query: 1557 NSILDVIGVVSSISLTASIMKKDGTETLKRSLQLKDMSGRSVELTLWGNFCNAEGQQLQN 1378
            NS++DVIGVVS IS +ASIM+K+GTET KR+L LKDMSGRSVELTLWGNFCNAEGQ+LQN
Sbjct: 402  NSVVDVIGVVSFISPSASIMRKNGTETQKRALHLKDMSGRSVELTLWGNFCNAEGQRLQN 461

Query: 1377 MCDNGVFPVVAVKACRTNDFNGKSVGTLSTSQLYIEPDFPEAVQLREWFDREGKNKPCIS 1198
            MCD+GVFPV+AVK+ R NDFNGK+VGT+STSQL+IEPDFPEA +L+EWFD+EG+N P +S
Sbjct: 462  MCDSGVFPVLAVKSARVNDFNGKAVGTISTSQLFIEPDFPEARKLKEWFDKEGRNTPSVS 521

Query: 1197 ISRESVGTGRGDVRKTVSQIKDEQLGTSEKPDWITVKATISFIKADNFCYTACPLMVGDR 1018
            ISRE    GR DVRKT+SQIKDE+LGTSEKPDWITV AT+SFIK DNFCYTACP+M+GDR
Sbjct: 522  ISREVTSMGRTDVRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDR 581

Query: 1017 QCNKKVTNNADGQWRCEKCDKSVPECDYRYILQFQIQDHTGVTWVTAFQECGEEIMGGVS 838
            QCNKKVTNN DG+WRCE+CD+SV +CDYRYILQFQIQDHTG+TWVTAFQECGEEIM G+S
Sbjct: 582  QCNKKVTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQECGEEIM-GIS 640

Query: 837  AKDLYHLKHEEQDDEKLADIIRGVLFTQYLFKLKVKEETFSDEQRVKSTVVKAEKLDMTS 658
            AK+LY+LK+EEQDDEK  +I+RGVLFT+Y FKLKVKEE FSDEQRVKSTVVKAEK++ +S
Sbjct: 641  AKNLYYLKYEEQDDEKFGEILRGVLFTKYSFKLKVKEEIFSDEQRVKSTVVKAEKVNFSS 700

Query: 657  ESRFLLDTIEK----------LAEDPNAKGGVTETGMNTSYGLRGVRQATSAT------- 529
            ESRFLLD +EK           +E+  + GG+T  G+    G  G+RQ+T +        
Sbjct: 701  ESRFLLDMVEKHKVEDSTFPLKSENVISNGGMTNPGL----GNVGIRQSTPSVNYSGNAS 756

Query: 528  ------GVQANHVGQYGNPYNNNSSGREPAAVGGTGVYVYCNSCGGTGHNSKNCPSITNR 367
                  G  AN   Q+GN Y   SSG   +A G TG+Y  CNSCGGTGH+S NCPS+ + 
Sbjct: 757  NAGRDFGFPANQGVQHGNQY--GSSGL--SATGSTGMYQSCNSCGGTGHSSSNCPSVMHS 812

Query: 366  QGQRMVSSGYNTTNRSGAVAGGSTDSCYKCHQTGHWARDCPGSN 235
              Q     GY +   +G  AGG+T  CYKCHQ GHWARDCPG N
Sbjct: 813  PRQSS-GGGYVSRASTGPSAGGTTGECYKCHQFGHWARDCPGLN 855


>emb|CAN82475.1| hypothetical protein VITISV_038295 [Vitis vinifera]
          Length = 882

 Score = 1074 bits (2777), Expect = 0.0
 Identities = 556/884 (62%), Positives = 666/884 (75%), Gaps = 39/884 (4%)
 Frame = -1

Query: 2769 MAINLTSNAIALICDGEIQGEDVKPVVQVADIKLLSAGQQNNT-ERYRMLLSDGIHTQQG 2593
            M +NLT  AI+++C G+ QG DVKPV+QVADI+L++  QQ+N+ ER+R+LLSDG H QQG
Sbjct: 1    MGVNLTEGAISMLCSGDAQGSDVKPVLQVADIRLVNTQQQSNSNERFRILLSDGCHLQQG 60

Query: 2592 MLATQMNTLVHSGKLQKGSVVQLSQFVSQXXXXXXXXXIVDLNVILEKCDPIGEPKMYGQ 2413
            MLATQ N LV SG+LQKGSVVQL+QFV           I+DL+VILEKCDPIGEPK Y Q
Sbjct: 61   MLATQRNELVKSGRLQKGSVVQLTQFVCNVIKDRMIIIIIDLDVILEKCDPIGEPKQYVQ 120

Query: 2412 GGGGPSNALAPQARTS-------NHAGIASGNPQYYGGSTVSAPLQSAPVPAPNVAGRSA 2254
            GG   +  +AP ARTS       +H G   GNPQ +G S+    L       PN+AG ++
Sbjct: 121  GG--TAGGVAPIARTSAPMPSSVDHPGTVLGNPQSFGNSS----LTGGSAAKPNMAGVAS 174

Query: 2253 LHNPKPDPGSNTQSYGSPFNSNPDTRGFS--------VKAEPGAGHPPSTSLSGSYSDQN 2098
             +            + + F+SNPD+  F+         K +P AG P S + +GSY DQ+
Sbjct: 175  PY------------HANSFSSNPDSGRFAGTNAPPMYSKMQPDAGIPASAASTGSYGDQS 222

Query: 2097 RSYINSKPEAGSRAPVNTYGRPLQPTYQRPPPMYTNRGPVAKNEAPARIIPIAVLNPYQS 1918
              + N+K E  SRAP N   R  Q  YQ+PPPMYTNRGPVA+NEA ARIIPIA LNPYQ 
Sbjct: 223  TGFRNNKVEV-SRAPYNAPARQPQSAYQQPPPMYTNRGPVARNEAXARIIPIAALNPYQG 281

Query: 1917 RWTIKARVTSKKELRHYSNARGDGKVFSFDLLDSDGGEIQVTCFNAVADQFFDIIEAGRV 1738
            RWTIKARVT+K ELRHY+N RGDGKVFSFDLLDSDGGEI+VTCFNAVADQF++ IE G+V
Sbjct: 282  RWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYNQIETGKV 341

Query: 1737 YLISKGMLKPASKNFNRLQNEYEIYLESTSTVQVCLEDDDSIPRQQFHFRSISDIENMEN 1558
            YLISKG LKPA K FN L+N++EI+LESTST+Q C +DD+SIPRQQFHFR ISD+E+MEN
Sbjct: 342  YLISKGSLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDDNSIPRQQFHFRXISDVESMEN 401

Query: 1557 NSILDVIGVVSSISLTASIMKKDGTETLKRSLQLKDMSGRSVELTLWGNFCNAEGQQLQN 1378
            NS++DVIGVVS IS +ASIM+K+GTET KR+L LKDMSGRSVELTLWGNFCNAEGQ+LQN
Sbjct: 402  NSVVDVIGVVSFISPSASIMRKNGTETQKRALHLKDMSGRSVELTLWGNFCNAEGQRLQN 461

Query: 1377 MCDNGVFPVVAVKACRTNDFNGKSVGTLSTSQLYIEPDFPEAVQLREWFDREGKNKPCIS 1198
            MCD+GVFPV+AVK+ R NDFNGK+VGT+STSQL+IEPDFPEA +L+EWFD+EG+N P +S
Sbjct: 462  MCDSGVFPVLAVKSARVNDFNGKAVGTISTSQLFIEPDFPEARKLKEWFDKEGRNTPSVS 521

Query: 1197 ISRESVGTGRGDVRKTVSQIKDEQLGTSEKPDWITVKATISFIKADNFCYTACPLMVGDR 1018
            ISRE    GR DVRKT+SQIKDE+LGTSEKPDWITV AT+SFIK DNFCYTACP+M+GDR
Sbjct: 522  ISREVTXMGRTDVRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDR 581

Query: 1017 QCNKKVTNNADGQWRCEKCDKSVPECDYRYILQFQIQDHTGVTWVTAFQECGEEIMGGVS 838
            QCNKKVTNN DG+WRCE+CD+SV +CDYRYILQFQIQDHTG+TWVTAFQECGEEIM G+S
Sbjct: 582  QCNKKVTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQECGEEIM-GIS 640

Query: 837  AKDLYHLKHEEQDDEKLADIIRGVLFTQYLFKLKVKEETFSDEQRVKSTVVKAEKLDMTS 658
            AK+LY+LK+EEQDDEK  +I+RGVLFT+Y FKLKVKEE FSDEQRVKSTVVKAEK++ +S
Sbjct: 641  AKNLYYLKYEEQDDEKFGEILRGVLFTKYSFKLKVKEEIFSDEQRVKSTVVKAEKVNFSS 700

Query: 657  ESRFLLDTIEK----------LAEDPNAKGGVTETGMNTSYGLRGVRQATSAT------- 529
            ESRFLLD +EK           +E+  + GG+T  G+    G  G+RQ+T +        
Sbjct: 701  ESRFLLDMVEKHKVEDSTFPLKSENVISNGGMTNPGL----GNVGIRQSTPSVNYSGNAS 756

Query: 528  ------GVQANHVGQYGNPYNNNSSGREPAAVGGTGVYVYCNSCGGTGHNSKNCPSITNR 367
                  G  AN   Q+GN Y   SSG   +A G TG+   CNSCGGTGH+S NCPS+ + 
Sbjct: 757  NAGRDFGFPANQGVQHGNQY--GSSGL--SATGSTGMXQSCNSCGGTGHSSSNCPSVMHS 812

Query: 366  QGQRMVSSGYNTTNRSGAVAGGSTDSCYKCHQTGHWARDCPGSN 235
              Q     GY +   +G  AGG+T  CYKCHQ GHWARDCPG N
Sbjct: 813  PRQSS-GGGYVSRASTGPSAGGTTGECYKCHQFGHWARDCPGLN 855


>ref|XP_004146122.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
            [Cucumis sativus]
          Length = 861

 Score =  944 bits (2439), Expect = 0.0
 Identities = 487/859 (56%), Positives = 612/859 (71%), Gaps = 15/859 (1%)
 Frame = -1

Query: 2772 MMAINLTSNAIALICDGEIQGEDVKPVVQVADIKLLSAGQQNNTERYRMLLSDGIHTQQG 2593
            M +  LT  A+ +IC  E   E  +P++QV D+KL++  QQ+ +ER+R+L+SDG H QQG
Sbjct: 5    MASSKLTEGAVMVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHFQQG 64

Query: 2592 MLATQMNTLVHSGKLQKGSVVQLSQFVSQXXXXXXXXXIVDLNVILEKCDPIGEPKMYGQ 2413
            ML TQ+N LV SGKLQKGS+V+L Q+V           +++L+VI E CD IGEP    +
Sbjct: 65   MLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCDIIGEPVSATR 124

Query: 2412 GGGGPSNALAPQARTS-NHAGIASGNPQYYGGSTVSAPLQSAPVPAPNVAGRSALHNPKP 2236
                 +NAL+     S    G + G+     G+  SA  +   V   +V    +  NP P
Sbjct: 125  SS---ANALSGNPLPSVGGLGASPGSGMIGKGNVSSASFEQPKVNQSHVPHMGSYSNP-P 180

Query: 2235 DPGSNTQSYGSPFNSNPDTRGFSVKAEPGAGHPPSTSLSGSYSDQNRSYINSKPEAGSRA 2056
            + G  + S   P  S  D+         G+     + L+GSY DQ  +Y NS  +   R 
Sbjct: 181  ETGRFSASIAPPSYSKTDS---------GSRFNGPSPLTGSYGDQKMAYHNSGSDI-PRP 230

Query: 2055 PVNT--YGRPLQPTYQRPPPMYTNRGPVAKNEAPARIIPIAVLNPYQSRWTIKARVTSKK 1882
            P+N+  Y RP QP YQ+PP MY+NRGP+AKNEA  RI+PI+ LNPYQ RWTIKARVTSK 
Sbjct: 231  PLNSNAYARP-QPIYQQPPSMYSNRGPIAKNEAAPRIMPISALNPYQGRWTIKARVTSKG 289

Query: 1881 ELRHYSNARGDGKVFSFDLLDSDGGEIQVTCFNAVADQFFDIIEAGRVYLISKGMLKPAS 1702
            ELRHY+N RGDGKVFSFDLLD+  GEI+VTCFN VADQF++ IE+G+VY ISKG LKPA 
Sbjct: 290  ELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQ 349

Query: 1701 KNFNRLQNEYEIYLESTSTVQVCLEDDDSIPRQQFHFRSISDIENMENNSILDVIGVVSS 1522
            KNFN L+N+YEI+LE+TST+Q C EDD SIP+QQFHF  I +IE M++NS++DVIGVVSS
Sbjct: 350  KNFNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHQIGEIEGMDSNSVVDVIGVVSS 409

Query: 1521 ISLTASIMKKDGTETLKRSLQLKDMSGRSVELTLWGNFCNAEGQQLQNMCDNGVFPVVAV 1342
            I+   S+M+K+GTET KRSLQLKDMSGRSVELTLWGNFC AEGQ+LQNMCD+G+FPV+AV
Sbjct: 410  INPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAV 469

Query: 1341 KACRTNDFNGKSVGTLSTSQLYIEPDFPEAVQLREWFDREGKNKPCISISRESVGTGRGD 1162
            K+ R +DFNGK+VGT+STSQL+IEPDFPEA  LREWF+REG++   +SISRE    GR D
Sbjct: 470  KSSRVSDFNGKAVGTISTSQLFIEPDFPEAHSLREWFEREGRSTLSVSISREVASVGRTD 529

Query: 1161 VRKTVSQIKDEQLGTSEKPDWITVKATISFIKADNFCYTACPLMVGDRQCNKKVTNNADG 982
            VRKT+SQIKDE+LGTSEKPDWITV AT+SFIK D+FCYTACP+M+GDRQC+KKVTNN DG
Sbjct: 530  VRKTISQIKDERLGTSEKPDWITVSATVSFIKVDSFCYTACPIMIGDRQCSKKVTNNGDG 589

Query: 981  QWRCEKCDKSVPECDYRYILQFQIQDHTGVTWVTAFQECGEEIMGGVSAKDLYHLKHEEQ 802
            +WRC++CD+SV ECDYRYILQ QIQDHTG+TWVTAFQE GEEIM G+ AK LY+LK+EEQ
Sbjct: 590  KWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIM-GIPAKRLYYLKYEEQ 648

Query: 801  DDEKLADIIRGVLFTQYLFKLKVKEETFSDEQRVKSTVVKAEKLDMTSESRFLLDTIEKL 622
            DDEK A+IIR VLFT+++ KLK+KEETFSDEQRV+STVVKAE ++ +SESRFLL+ +EKL
Sbjct: 649  DDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSSESRFLLNLMEKL 708

Query: 621  AEDPNAKGGVTETGMNTSYGLR-------GVRQATSATGVQANHVGQYGNP-----YNNN 478
              + ++           ++G R       G  Q  S      N   +YG P     Y N 
Sbjct: 709  KPENSSSATPKAESTIHNFGFRDTASENIGGGQFVSPIRNSTNFSREYGTPNQGVQYGNQ 768

Query: 477  SSGREPAAVGGTGVYVYCNSCGGTGHNSKNCPSITNRQGQRMVSSGYNTTNRSGAVAGGS 298
             S   P+         YCNSCGG+GH+S NCPSI +  G  +   G   +N++   +GG+
Sbjct: 769  YSSSRPSPSTPLNSNTYCNSCGGSGHSSTNCPSIMS--GPALSVGGGMYSNQASGPSGGT 826

Query: 297  TDSCYKCHQTGHWARDCPG 241
            +  C+KCHQTGHWARDCPG
Sbjct: 827  SGECFKCHQTGHWARDCPG 845


>ref|XP_003533460.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
            [Glycine max]
          Length = 894

 Score =  903 bits (2334), Expect = 0.0
 Identities = 484/864 (56%), Positives = 603/864 (69%), Gaps = 21/864 (2%)
 Frame = -1

Query: 2769 MAINLTSNAIALICDGEIQGEDVKPVVQVADIKLLSAGQQNNTERYRMLLSDGIHTQQGM 2590
            MA++LT +AI  +C      E ++PV+QV ++KL+ + Q +N ERYR++LSDG H QQGM
Sbjct: 1    MAVSLTQSAIMEMCSANCP-EGLQPVLQVIELKLVQSQQNSNVERYRLVLSDGSHYQQGM 59

Query: 2589 LATQMNTLVHSGKLQKGSVVQLSQFVSQXXXXXXXXXIVDLNVILEKCDPIGEPKMYGQG 2410
            LATQ N LVH+GKLQKGSVV+L+QF+           IVDL+V+L+KC+ IGEP      
Sbjct: 60   LATQKNDLVHAGKLQKGSVVRLTQFICNVVQSRKIIIIVDLDVVLDKCELIGEPV----- 114

Query: 2409 GGGPSNALAPQARTSNHAGIASGNPQYYGGSTVSAPLQSAPVPA-PNVAGRSALHNPKPD 2233
               P+   AP    +  +G+ SGNPQ    S+      +  +PA PNVA      +P PD
Sbjct: 115  ---PAPKDAPTESATGQSGVTSGNPQLLNSSS-----HTGGMPARPNVA------SPSPD 160

Query: 2232 PGSNTQSYGSPFNSN-PDTRGFSVKAEPGAGHPPSTSLSGSYSDQNRSYINSKPEAGSRA 2056
                  S    ++SN P T     K E G     S   SGS   QN  + N + EA SR 
Sbjct: 161  HPKVNPSASGVYSSNAPPTYP---KVEHGVSR--SAPFSGSSGGQNTGFRNPQFEA-SRP 214

Query: 2055 PVNTYGRP-LQPTYQRPPPMYTNRGPVAKNEAPARIIPIAVLNPYQSRWTIKARVTSKKE 1879
              N+Y RP  QP Y++P PMYTNR P+ +NEA  RIIPIA LNPYQS WTIKARVT K E
Sbjct: 215  LQNSYARPPQQPMYRQPSPMYTNRAPMGRNEAAPRIIPIAALNPYQSMWTIKARVTFKGE 274

Query: 1878 LRHYSNARGDGKVFSFDLLDSDGGEIQVTCFNAVADQFFDIIEAGRVYLISKGMLKPASK 1699
            LRHY+NARGDGKVFSFDLLDSDGGEI+ TCFNAVADQF+++IEAG+VYLIS+G +KPA K
Sbjct: 275  LRHYTNARGDGKVFSFDLLDSDGGEIRATCFNAVADQFYNVIEAGKVYLISRGSIKPAQK 334

Query: 1698 NFNRLQNEYEIYLESTSTVQVCLEDDDSIPRQQFHFRSISDIENMENNSILDVIGVVSSI 1519
            NFN L+N+ E+ L+  S +Q CL+D+DSIP Q F++R IS+IE++ENNSI+DVIGVV+SI
Sbjct: 335  NFNHLRNDQELTLDVASIIQPCLDDNDSIPSQTFNYRPISEIESLENNSIVDVIGVVTSI 394

Query: 1518 SLTASIMKKDGTETLKRSLQLKDMSGRSVELTLWGNFCNAEGQQLQNMCDNGVFPVVAVK 1339
            S TASIM+K+GTE  KR+LQLKDMSGRSVELTLWGNFC  EGQ+LQ +CD G FPV+A K
Sbjct: 395  SPTASIMRKNGTEVQKRTLQLKDMSGRSVELTLWGNFCIVEGQRLQTICDAGEFPVLATK 454

Query: 1338 ACRTNDFNGKSVGTLSTSQLYIEPDFPEAVQLREWFDREGKNKPCISISRESVGTGRGDV 1159
            A R NDFNGKSVGT++TSQLY+EPDFPEA  L+ WF+ EGK+ P +SISRE    G+ DV
Sbjct: 455  AVRVNDFNGKSVGTIATSQLYVEPDFPEACTLKRWFENEGKSVPTLSISREISNLGKTDV 514

Query: 1158 RKTVSQIKDEQLGTSEKPDWITVKATISFIKADNFCYTACPLMVGDRQCNKKVTNNADGQ 979
            RKT+SQIKDE+LGTSEKPDWI+V A +S IK DNFCY  CPL +GDRQCNKKVTNNADG 
Sbjct: 515  RKTISQIKDEKLGTSEKPDWISVFAAVSHIKVDNFCYPGCPLKIGDRQCNKKVTNNADGT 574

Query: 978  WRCEKCDKSVPECDYRYILQFQIQDHTGVTWVTAFQECGEEIMGGVSAKDLYHLKHEEQD 799
            W CE+C++S+  CD+RY+L  QIQDHTG+TWVTAFQE GEEIM G+ AKDLY++K+EEQD
Sbjct: 575  WHCERCNQSIDTCDFRYLLSMQIQDHTGITWVTAFQESGEEIM-GIPAKDLYYMKYEEQD 633

Query: 798  DEKLADIIRGVLFTQYLFKLKVKEETFSDEQRVKSTVVKAEKLDMTSESRFLLDTIEKLA 619
            D+K ++I   VLFT+Y+FKL++KEE +SDEQR+KST+VKAEK++  S+SR  L+ I    
Sbjct: 634  DDKFSEIFHKVLFTEYMFKLRIKEEFYSDEQRIKSTIVKAEKVNFASKSRVNLELIFNEL 693

Query: 618  EDPNAKG-------------GVTETGMNTSYGLRGVRQATSAT-GVQANHVG-QYGNPYN 484
                +KG             G  ETG  T          TS   G+ AN VG Q+GN Y+
Sbjct: 694  RAEKSKGITIPNSVTNNTRLGSVETGQVTPPAYYKSNANTSRDFGMPANQVGQQHGNQYS 753

Query: 483  NNSSGREPAAVGGTGVYVYCNSCGGTGHNSKNCPSITNRQGQRMVSSGYNTTNRSGA--- 313
            N SS     A    G Y  C +CG +GH+S  CP+I N  G    S+G    NR+ A   
Sbjct: 754  NISS-----AGAAPGSYTSCTNCGVSGHSSALCPNIRNVPGH---SAGGGFANRASAGLG 805

Query: 312  VAGGSTDSCYKCHQTGHWARDCPG 241
              GG++  CYKCHQ+GH+ARDCPG
Sbjct: 806  GGGGASVECYKCHQSGHYARDCPG 829


>ref|XP_002519884.1| replication factor A 1, rfa1, putative [Ricinus communis]
            gi|223540930|gb|EEF42488.1| replication factor A 1, rfa1,
            putative [Ricinus communis]
          Length = 901

 Score =  899 bits (2322), Expect = 0.0
 Identities = 479/891 (53%), Positives = 599/891 (67%), Gaps = 45/891 (5%)
 Frame = -1

Query: 2772 MMAINLTSNAIALICDGEIQGEDVKPVVQVADIKLLSAGQQNNTERYRMLLSDGIHTQQG 2593
            M  +NL+  AI+ I  G     ++KP +QV ++K +   Q   +ER+R++LSDG H QQ 
Sbjct: 1    MANMNLSEGAISKITSGGATAAELKPTLQVTELKQVQTKQPQQSERFRLILSDGSHLQQA 60

Query: 2592 MLATQMNTLVHSGKLQKGSVVQLSQFVSQXXXXXXXXXIVD--------------LNVIL 2455
            ML TQ+N LV  G L+ GSVVQL Q+                             LN IL
Sbjct: 61   MLGTQINHLVKDGNLRPGSVVQLIQYTCTTVQGRMLLGSRSCIGCERNRGRAYLLLNEIL 120

Query: 2454 ------EKCDPIGEPKMYGQGGGGPSNALAPQARTSNHAGIASGNPQYYGGSTVSAPLQS 2293
                   KC  IG P +  Q   GPS+    Q  +S        NPQ YG  + +  +  
Sbjct: 121  LGFFSFAKCAIIGNP-VSAQKTLGPSHPSTDQPVSS------PANPQSYGSGSPAGGM-- 171

Query: 2292 APVPAPNVAGRSALHNPKPDP---GSNTQSYGSPFNSNPDTRGFSVKAEPGAGHPPSTSL 2122
              V  PN+   S+L NP+ +     S+  SY S      +     +KAEPG+G P S S+
Sbjct: 172  --VENPNL-NVSSLQNPRMNQLHGSSHPSSYDSGRYVTTNAPPCHLKAEPGSGLPGSASM 228

Query: 2121 SGSYSDQNRSYINSKPEAGSRAPVNTYGRPLQPTYQRPPPMYTNRGPVAKNEAPARIIPI 1942
            + SY++Q+  + N +PE        TY  P  P YQ+PPPMY+NRGPVAKNEAP RI+PI
Sbjct: 229  NRSYNEQSAGFCNPRPEIPQTT--GTYPYPPCPAYQQPPPMYSNRGPVAKNEAPPRIMPI 286

Query: 1941 AVLNPYQSRWTIKARVTSKKELRHYSNARGDGKVFSFDLLDSDGGEIQVTCFNAVADQFF 1762
            + LNPYQ RWTIKARVT+K ELRHY+N RGDGKVFSFDLLDSDGGEI+V CFN VADQF+
Sbjct: 287  SALNPYQGRWTIKARVTAKGELRHYNNVRGDGKVFSFDLLDSDGGEIRVICFNTVADQFY 346

Query: 1761 DIIEAGRVYLISKGMLKPASKNFNRLQNEYEIYLESTSTVQVCLEDDDSIPRQQFHFRSI 1582
              IEAG+VYLIS+G LKPA K FN L N+ EI+LES S +Q C EDDD+IPRQQFHFR I
Sbjct: 347  HQIEAGKVYLISRGNLKPAQKTFNHLHNDLEIFLESNSVIQPCFEDDDAIPRQQFHFRPI 406

Query: 1581 SDIENMENNSILDVIGVVSSISLTASIMKKDGTETLKRSLQLKDMSGRSVELTLWGNFCN 1402
            S++E M+NNS++D+IG+VS I+  ASIM+K+GTET KR+LQLKD SGRSVELTLWGNFCN
Sbjct: 407  SEVEGMDNNSVVDIIGMVSCITPVASIMRKNGTETQKRTLQLKDNSGRSVELTLWGNFCN 466

Query: 1401 AEGQQLQNMCDNGVFPVVAVKACRTNDFNGKSVGTLSTSQLYIEPDFPEAVQLREWFDRE 1222
            AEGQ+LQNMCD+G FPV+AVK+ R +DFNGK+VGT+STSQL+IEPD PEA +L+EWF++E
Sbjct: 467  AEGQRLQNMCDSGGFPVLAVKSGRVSDFNGKAVGTISTSQLFIEPDIPEARRLKEWFEKE 526

Query: 1221 GKNKPCISISRESVGTGRGDVRKTVSQIKDEQLGTSEKPDWITVKATISFIKADNFCYTA 1042
            G+N P +SISRE    GR ++ KT+SQIKDE+LGTSEKPDWIT+ AT+ +IKADNFCYTA
Sbjct: 527  GRNTPSVSISRELSSVGRSEIHKTISQIKDEKLGTSEKPDWITINATVIYIKADNFCYTA 586

Query: 1041 CPLMVGDRQCNKKVTNNADGQWRCEKCDKSVPECDYRYILQFQIQDHTGVTWVTAFQECG 862
            CP+M GDR C+KKVTNN DG+WRCEKCD+S+ ECDYRYILQ Q+QDHTG+TWVTAFQE G
Sbjct: 587  CPIMAGDRPCSKKVTNNGDGKWRCEKCDQSMDECDYRYILQLQLQDHTGITWVTAFQESG 646

Query: 861  EEIMGGVSAKDLYHLKHEEQDDEKLADIIRGVLFTQYLFKLKVKEETFSDEQRVKSTVVK 682
            EEIM G+SAKDL+ +K+E QDDE  + I+R VLF++++ KLKVKEETFSDEQRVKSTVV+
Sbjct: 647  EEIM-GISAKDLHFMKYENQDDESFSKILRQVLFSKFVIKLKVKEETFSDEQRVKSTVVR 705

Query: 681  AEKLDMTSESRFLLDTIEK------LAEDPNAKGGVTETGMNTSYGLRGVRQATSAT--- 529
            AEK++ +S+SRFLL+ +EK      +    N +     +G NT     G R   S     
Sbjct: 706  AEKVNHSSQSRFLLEIMEKYKSGNSIPSASNVESNYPNSGANTGIDSIGSRIGGSLNSNQ 765

Query: 528  -----------GVQANHVGQYGNPYNNNSSGREPAAVGGTGVYVYCNSCGGTGHNSKNCP 382
                       G+Q N VGQYGN +          + G     + C SCG T H+S NCP
Sbjct: 766  VGKSSFAAREFGLQTNQVGQYGNQF----------SAGYPTHNLSCISCGATSHSSANCP 815

Query: 381  SITNRQGQRMVSSGYNTTNRSGAVAG--GSTDSCYKCHQTGHWARDCPGSN 235
            S  N   Q   S+G    N+  ++AG  G+   CYKCHQ GHWARDCPG N
Sbjct: 816  STINAPRQ---SAGGFYANQPSSLAGSAGAGGECYKCHQVGHWARDCPGLN 863