BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00014863
         (675 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634851.1| PREDICTED: pentatricopeptide repeat-containi...   299   3e-79
emb|CAN77919.1| hypothetical protein VITISV_027645 [Vitis vinifera]   299   3e-79
gb|ACP39956.1| pentatricopeptide repeat protein [Gossypium hirsu...   298   6e-79
ref|XP_003634853.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   295   4e-78
ref|XP_004145104.1| PREDICTED: pentatricopeptide repeat-containi...   293   3e-77

>ref|XP_003634851.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Vitis vinifera]
          Length = 396

 Score =  299 bits (766), Expect = 3e-79
 Identities = 141/224 (62%), Positives = 189/224 (84%)
 Frame = +2

Query: 2   KQKTRTAIFLLKSEKNPERILDICRAASLNPEFRLDRIALSVAISNLTESQSFEFIRSFL 181
           K+K+R A+ LLKSE++P+RIL+ICRAA+L PE  LDR+A SVAIS L +S+ F+ IR FL
Sbjct: 33  KEKSRAALSLLKSEQDPQRILEICRAAALTPESHLDRVAFSVAISKLADSKHFDSIRHFL 92

Query: 182 EELKLRPDLRNDRFFSHSMVLYGQAGMLDHAIRTFKEMGEMGIPPTTKSLNALLVACLIS 361
           +ELK RPDLR +RF SH++VL+GQAGML+ A+RTF++M ++G+  T +SLNALL +C+++
Sbjct: 93  DELKARPDLRTERFVSHAIVLFGQAGMLNDAVRTFEQMHQLGVDRTVRSLNALLFSCILA 152

Query: 362 KKYSEVNQIFVEFPRSYGVKPNMDTYNKVIKAFCESGSASSTYSILAEMDRKGCEPNATT 541
           K Y E N+IF+EFP++YG++ N+D+YN V+KAF ESGS+SS YSILAEM RKG +PNAT+
Sbjct: 153 KNYKEANRIFLEFPKTYGIELNLDSYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNATS 212

Query: 542 FGTMLAGFYLEEKYHDVGKVLELMKKHGQSPGLSTYNIRIQSLC 673
           FG +LAGFY EEKY DVGKVL++M+++   PG+STYNIRIQSLC
Sbjct: 213 FGILLAGFYNEEKYEDVGKVLKMMEEYKMQPGISTYNIRIQSLC 256



 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
 Frame = +2

Query: 227 SHSMVL--YGQAGMLDHAIRTFKEMGEMGIPPTTKSLNALLVACLISKKYSEVNQIFVEF 400
           S++ VL  + ++G          EMG  G+ P   S   LL      +KY +V ++ ++ 
Sbjct: 177 SYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNATSFGILLAGFYNEEKYEDVGKV-LKM 235

Query: 401 PRSYGVKPNMDTYNKVIKAFCESGSASSTYSILAEMDRKGCEPNATTFGTMLAGFYLEEK 580
              Y ++P + TYN  I++ C+   +S   ++L  +  +  +PN+ T+  ++ GF  E  
Sbjct: 236 MEEYKMQPGISTYNIRIQSLCKLKKSSEAKALLDGILARRMKPNSETYCHLIHGFCKEGN 295

Query: 581 YHDVGKVLELMKKHGQSPGLSTYNIRIQSLC 673
             +  K+ + M   G  P    Y   +  LC
Sbjct: 296 LDEAKKLFKDMVNRGCKPDSDCYFTLVYFLC 326


>emb|CAN77919.1| hypothetical protein VITISV_027645 [Vitis vinifera]
          Length = 396

 Score =  299 bits (766), Expect = 3e-79
 Identities = 141/224 (62%), Positives = 189/224 (84%)
 Frame = +2

Query: 2   KQKTRTAIFLLKSEKNPERILDICRAASLNPEFRLDRIALSVAISNLTESQSFEFIRSFL 181
           K+K+R A+ LLKSE++P+RIL+ICRAA+L PE  LDR+A SVAIS L +S+ F+ IR FL
Sbjct: 33  KEKSRAALSLLKSEQDPQRILEICRAAALTPESHLDRVAFSVAISKLADSKHFDSIRHFL 92

Query: 182 EELKLRPDLRNDRFFSHSMVLYGQAGMLDHAIRTFKEMGEMGIPPTTKSLNALLVACLIS 361
           +ELK RPDLR +RF SH++VL+GQAGML+ A+RTF++M ++G+  T +SLNALL +C+++
Sbjct: 93  DELKARPDLRTERFVSHAIVLFGQAGMLNDAVRTFEQMHQLGVDRTVRSLNALLFSCILA 152

Query: 362 KKYSEVNQIFVEFPRSYGVKPNMDTYNKVIKAFCESGSASSTYSILAEMDRKGCEPNATT 541
           K Y E N+IF+EFP++YG++ N+D+YN V+KAF ESGS+SS YSILAEM RKG +PNAT+
Sbjct: 153 KNYKEANRIFLEFPKTYGIELNLDSYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNATS 212

Query: 542 FGTMLAGFYLEEKYHDVGKVLELMKKHGQSPGLSTYNIRIQSLC 673
           FG +LAGFY EEKY DVGKVL++M+++   PG+STYNIRIQSLC
Sbjct: 213 FGILLAGFYNEEKYEDVGKVLKMMEEYKMQPGISTYNIRIQSLC 256



 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
 Frame = +2

Query: 227 SHSMVL--YGQAGMLDHAIRTFKEMGEMGIPPTTKSLNALLVACLISKKYSEVNQIFVEF 400
           S++ VL  + ++G          EMG  G+ P   S   LL      +KY +V ++ ++ 
Sbjct: 177 SYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNATSFGILLAGFYNEEKYEDVGKV-LKM 235

Query: 401 PRSYGVKPNMDTYNKVIKAFCESGSASSTYSILAEMDRKGCEPNATTFGTMLAGFYLEEK 580
              Y ++P + TYN  I++ C+   +S   ++L  +  +  +PN+ T+  ++ GF  E  
Sbjct: 236 MEEYKMQPGISTYNIRIQSLCKLKKSSEAKALLDGILARRMKPNSETYCHLIHGFCKEGN 295

Query: 581 YHDVGKVLELMKKHGQSPGLSTYNIRIQSLC 673
             +  K+ + M   G  P    Y   +  LC
Sbjct: 296 LDEAKKLFKDMVNRGCKPDSDCYFTLVYFLC 326


>gb|ACP39956.1| pentatricopeptide repeat protein [Gossypium hirsutum]
           gi|227463010|gb|ACP39957.1| pentatricopeptide repeat
           protein [Gossypium hirsutum]
          Length = 337

 Score =  298 bits (763), Expect = 6e-79
 Identities = 147/223 (65%), Positives = 178/223 (79%)
 Frame = +2

Query: 5   QKTRTAIFLLKSEKNPERILDICRAASLNPEFRLDRIALSVAISNLTESQSFEFIRSFLE 184
           QKTR A+ LLKSE+NP+RIL+ICRAASL P F LDRIA SVAIS L+E   F+ I +FL 
Sbjct: 36  QKTRAALCLLKSEQNPDRILNICRAASLTPTFHLDRIAFSVAISKLSEGNHFQSIDTFLR 95

Query: 185 ELKLRPDLRNDRFFSHSMVLYGQAGMLDHAIRTFKEMGEMGIPPTTKSLNALLVACLISK 364
           EL  RPDL+++RF SHS++LYGQA ML+HA+ TF E    G   +TKSLNALLVA +++K
Sbjct: 96  ELNSRPDLQHERFVSHSLILYGQAKMLNHALTTFDEFYNKGYCRSTKSLNALLVAAILAK 155

Query: 365 KYSEVNQIFVEFPRSYGVKPNMDTYNKVIKAFCESGSASSTYSILAEMDRKGCEPNATTF 544
            Y E  +IFVEFP+ YG++PN++TYN  IKA CESGS+SS YSIL +M  KG +PNATTF
Sbjct: 156 DYKEAKRIFVEFPKRYGIEPNLETYNTAIKALCESGSSSSVYSILVDMKSKGIKPNATTF 215

Query: 545 GTMLAGFYLEEKYHDVGKVLELMKKHGQSPGLSTYNIRIQSLC 673
           GT+LAGFY EEKY DVGKVL LMK+HG S G+STYNIRI+SLC
Sbjct: 216 GTLLAGFYAEEKYEDVGKVLNLMKEHGVSVGVSTYNIRIRSLC 258


>ref|XP_003634853.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g61870, mitochondrial-like [Vitis vinifera]
          Length = 336

 Score =  295 bits (756), Expect = 4e-78
 Identities = 139/224 (62%), Positives = 187/224 (83%)
 Frame = +2

Query: 2   KQKTRTAIFLLKSEKNPERILDICRAASLNPEFRLDRIALSVAISNLTESQSFEFIRSFL 181
           K+K+R A+ LLKSE++P+RIL+ICRAA+L PE  LDR+A SVAIS L +S+ F+ IR FL
Sbjct: 33  KEKSRAALSLLKSEQDPQRILEICRAAALTPESHLDRVAFSVAISKLADSKHFDSIRHFL 92

Query: 182 EELKLRPDLRNDRFFSHSMVLYGQAGMLDHAIRTFKEMGEMGIPPTTKSLNALLVACLIS 361
           +ELK RPDLR +RF SH++VL+GQAGML+ A+RTF++M ++G+  T +SLNALL +C+++
Sbjct: 93  DELKARPDLRTERFVSHAIVLFGQAGMLNDAVRTFEQMHQLGVDRTVRSLNALLFSCILA 152

Query: 362 KKYSEVNQIFVEFPRSYGVKPNMDTYNKVIKAFCESGSASSTYSILAEMDRKGCEPNATT 541
           K Y E N+IF+EFP++YG++ N+D+YN V+KAF ESGS+SS YSILAEM RKG +PNAT+
Sbjct: 153 KNYKEANRIFLEFPKTYGIELNLDSYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNATS 212

Query: 542 FGTMLAGFYLEEKYHDVGKVLELMKKHGQSPGLSTYNIRIQSLC 673
           FG +LAGFY EEKY DVG VL++M+++   PG+STYNIR QSLC
Sbjct: 213 FGILLAGFYNEEKYEDVGXVLKMMEEYXMQPGISTYNIRXQSLC 256


>ref|XP_004145104.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Cucumis sativus]
           gi|449471723|ref|XP_004153390.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Cucumis sativus]
           gi|449530564|ref|XP_004172264.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Cucumis sativus]
          Length = 405

 Score =  293 bits (749), Expect = 3e-77
 Identities = 142/224 (63%), Positives = 184/224 (82%)
 Frame = +2

Query: 2   KQKTRTAIFLLKSEKNPERILDICRAASLNPEFRLDRIALSVAISNLTESQSFEFIRSFL 181
           KQK+R A+ LLK+E+NPERI+DICRAASL PEF LDRIA SVAIS L++ + F+ IR FL
Sbjct: 42  KQKSRAALSLLKTEENPERIIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFL 101

Query: 182 EELKLRPDLRNDRFFSHSMVLYGQAGMLDHAIRTFKEMGEMGIPPTTKSLNALLVACLIS 361
           EELK RPDL+N+RF  H++VLYGQA MLDHAIRTFK++ E+G+  + K+LNALL AC ++
Sbjct: 102 EELKSRPDLKNERFACHAIVLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLA 161

Query: 362 KKYSEVNQIFVEFPRSYGVKPNMDTYNKVIKAFCESGSASSTYSILAEMDRKGCEPNATT 541
           K Y E+ ++++EFP+ YG++P++DTYN+VIKAF ESGS+SS  SI+AEMDRK  +PNATT
Sbjct: 162 KDYKELKRVYMEFPKIYGIEPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATT 221

Query: 542 FGTMLAGFYLEEKYHDVGKVLELMKKHGQSPGLSTYNIRIQSLC 673
           F   LAG Y+EEK+ DV KVL LM+K+G   G++TYN RI+SLC
Sbjct: 222 FANWLAGCYMEEKFEDVEKVLNLMEKYGVRRGVATYNARIRSLC 265