BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00014836
         (1076 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282635.1| PREDICTED: putative exosome complex componen...   384   e-104
ref|XP_002318044.1| predicted protein [Populus trichocarpa] gi|1...   380   e-103
ref|XP_004138110.1| PREDICTED: putative exosome complex componen...   374   e-101
ref|XP_003613959.1| Exosome complex exonuclease RRP40 [Medicago ...   371   e-100
ref|XP_003518749.1| PREDICTED: putative exosome complex componen...   370   e-100

>ref|XP_002282635.1| PREDICTED: putative exosome complex component rrp40 [Vitis
           vinifera] gi|297733775|emb|CBI15022.3| unnamed protein
           product [Vitis vinifera]
          Length = 237

 Score =  384 bits (986), Expect = e-104
 Identities = 192/227 (84%), Positives = 207/227 (91%)
 Frame = +1

Query: 193 NSTTSFVDQTVVPGDVVLDLSNMSNQTIKLGEGLRQDGDAISVMKTGKLRFSKPNKYWVE 372
           N+  SFVDQ VVPGDVVLDLS M NQTIKLG GL QD DAI+V K G+LRFSKPNKYWVE
Sbjct: 4   NTPASFVDQLVVPGDVVLDLSKMGNQTIKLGGGLHQDCDAITVTKAGRLRFSKPNKYWVE 63

Query: 373 SSQKRYVPCVGDTILGIVVDQKAENFLVDIKGPTLAFLPVLAFEGGTRRNIPKFEVGTLL 552
           SSQKRYVPCV DT+LGIVVD KA+NFLVDIKGP LAFLPVLAFEGGTRRNIPKFE GTLL
Sbjct: 64  SSQKRYVPCVEDTVLGIVVDSKADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEAGTLL 123

Query: 553 YVRVVKSNPGMNPELSCTDANGKAAEFGPLKGGYMFESSTGLARMLLSSPTCPVLEALGK 732
           YVRVVK+N GMNPELSCTDA+GKAAEFGPLK GYMFESSTGL+RMLLSSPTCPVLEALGK
Sbjct: 124 YVRVVKANTGMNPELSCTDASGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEALGK 183

Query: 733 KLSFEIAVGLNGRVWVNAESPSTVIVAANALIKSENLSGLQQRIMVN 873
           KLSFEIAVGLNGRVWVNA SPSTVI+ ANA++ SE+LS +QQ+IMV+
Sbjct: 184 KLSFEIAVGLNGRVWVNASSPSTVILVANAIMNSESLSVVQQKIMVD 230


>ref|XP_002318044.1| predicted protein [Populus trichocarpa] gi|118482713|gb|ABK93275.1|
           unknown [Populus trichocarpa]
           gi|222858717|gb|EEE96264.1| predicted protein [Populus
           trichocarpa]
          Length = 242

 Score =  380 bits (975), Expect = e-103
 Identities = 186/226 (82%), Positives = 205/226 (90%)
 Frame = +1

Query: 190 SNSTTSFVDQTVVPGDVVLDLSNMSNQTIKLGEGLRQDGDAISVMKTGKLRFSKPNKYWV 369
           S S  +F+D  VVPGDVV+DLS+M+NQTIKLG GLRQD DAISVMK GKLRFSKPNKYWV
Sbjct: 6   SGSPATFIDNLVVPGDVVVDLSSMTNQTIKLGSGLRQDCDAISVMKAGKLRFSKPNKYWV 65

Query: 370 ESSQKRYVPCVGDTILGIVVDQKAENFLVDIKGPTLAFLPVLAFEGGTRRNIPKFEVGTL 549
           E+SQKRYVPC  D++LGIVVD K++NFL+DIKGP LAFLPVLAFEGGTRRNIPKFE GTL
Sbjct: 66  ETSQKRYVPCAEDSVLGIVVDSKSDNFLIDIKGPALAFLPVLAFEGGTRRNIPKFEAGTL 125

Query: 550 LYVRVVKSNPGMNPELSCTDANGKAAEFGPLKGGYMFESSTGLARMLLSSPTCPVLEALG 729
           LYVRVVK+NPGMNPELSCTDA+GKAAEFG LK GYMFE STGL+RMLLSSPTCPVLEALG
Sbjct: 126 LYVRVVKANPGMNPELSCTDASGKAAEFGALKDGYMFECSTGLSRMLLSSPTCPVLEALG 185

Query: 730 KKLSFEIAVGLNGRVWVNAESPSTVIVAANALIKSENLSGLQQRIM 867
           KKLSFEIAVGLNGRVWVNA SPS VI+ ANA++ SE LSG+QQ+IM
Sbjct: 186 KKLSFEIAVGLNGRVWVNANSPSIVIIVANAIMNSETLSGVQQKIM 231


>ref|XP_004138110.1| PREDICTED: putative exosome complex component rrp40-like [Cucumis
           sativus] gi|449477413|ref|XP_004155016.1| PREDICTED:
           putative exosome complex component rrp40-like [Cucumis
           sativus]
          Length = 243

 Score =  374 bits (961), Expect = e-101
 Identities = 185/231 (80%), Positives = 209/231 (90%)
 Frame = +1

Query: 181 ETLSNSTTSFVDQTVVPGDVVLDLSNMSNQTIKLGEGLRQDGDAISVMKTGKLRFSKPNK 360
           E  S+S+++ VDQ VVPGDVVLDLSNM+N+TIKLG GLRQD DAISV K GKLRFSKPNK
Sbjct: 3   EKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNK 62

Query: 361 YWVESSQKRYVPCVGDTILGIVVDQKAENFLVDIKGPTLAFLPVLAFEGGTRRNIPKFEV 540
           YWVESSQKRYVPC  D +LGIV+D +A+NFLVDIKGP+LAFLPVLAFEGGTRRNIPKFE+
Sbjct: 63  YWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEM 122

Query: 541 GTLLYVRVVKSNPGMNPELSCTDANGKAAEFGPLKGGYMFESSTGLARMLLSSPTCPVLE 720
           G LLYVRVVK NPGMNPEL+CTDA+GKAA FG LK GYMFE STGL+RMLLSSP+CPVLE
Sbjct: 123 GALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLE 182

Query: 721 ALGKKLSFEIAVGLNGRVWVNAESPSTVIVAANALIKSENLSGLQQRIMVN 873
           +LGKKLSFE AVGLNGRVWVNA+SPST+IV +NA++ SE LSG+QQRIMV+
Sbjct: 183 SLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVD 233


>ref|XP_003613959.1| Exosome complex exonuclease RRP40 [Medicago truncatula]
           gi|217074508|gb|ACJ85614.1| unknown [Medicago
           truncatula] gi|355515294|gb|AES96917.1| Exosome complex
           exonuclease RRP40 [Medicago truncatula]
           gi|388510130|gb|AFK43131.1| unknown [Medicago
           truncatula]
          Length = 240

 Score =  371 bits (952), Expect = e-100
 Identities = 183/226 (80%), Positives = 203/226 (89%)
 Frame = +1

Query: 190 SNSTTSFVDQTVVPGDVVLDLSNMSNQTIKLGEGLRQDGDAISVMKTGKLRFSKPNKYWV 369
           + S+T+FVDQ V PGDVVLDLS M+NQTIKLG GLRQDGD ISVMK G+LRFSKPNKYWV
Sbjct: 6   AGSSTNFVDQLVYPGDVVLDLSTMTNQTIKLGGGLRQDGDVISVMKAGRLRFSKPNKYWV 65

Query: 370 ESSQKRYVPCVGDTILGIVVDQKAENFLVDIKGPTLAFLPVLAFEGGTRRNIPKFEVGTL 549
           ESSQKRYVP   D++LGI+VD +++NFLVDIKGPTLAFLPVLAFEGGTRRNIPKFEVG L
Sbjct: 66  ESSQKRYVPHAEDSVLGIIVDSRSDNFLVDIKGPTLAFLPVLAFEGGTRRNIPKFEVGAL 125

Query: 550 LYVRVVKSNPGMNPELSCTDANGKAAEFGPLKGGYMFESSTGLARMLLSSPTCPVLEALG 729
           +YVRVVK+ PGMNPELSCTDA+GKA EFG LK GYMFE STGL+RMLLS+PTCPVL+ LG
Sbjct: 126 IYVRVVKAIPGMNPELSCTDASGKAGEFGALKEGYMFECSTGLSRMLLSTPTCPVLDTLG 185

Query: 730 KKLSFEIAVGLNGRVWVNAESPSTVIVAANALIKSENLSGLQQRIM 867
           KKLSFEIAVGLNGRVWVNA SPST I+ ANALI SE LSG+QQ+IM
Sbjct: 186 KKLSFEIAVGLNGRVWVNASSPSTTIIVANALINSEVLSGVQQKIM 231


>ref|XP_003518749.1| PREDICTED: putative exosome complex component rrp40-like [Glycine
           max]
          Length = 240

 Score =  370 bits (951), Expect = e-100
 Identities = 181/227 (79%), Positives = 206/227 (90%)
 Frame = +1

Query: 190 SNSTTSFVDQTVVPGDVVLDLSNMSNQTIKLGEGLRQDGDAISVMKTGKLRFSKPNKYWV 369
           S+S+T+ VDQ+V PGDV+LDLSNM+NQTIKLG GLRQD DAISVMK G+LRFSKPNKYWV
Sbjct: 6   SSSSTNLVDQSVCPGDVILDLSNMTNQTIKLGGGLRQDCDAISVMKAGRLRFSKPNKYWV 65

Query: 370 ESSQKRYVPCVGDTILGIVVDQKAENFLVDIKGPTLAFLPVLAFEGGTRRNIPKFEVGTL 549
           E+SQKRYVP   D++LGIVVD +++NFLVDIKGP LAFLPVLAFEGGTRRNIP+FE+GTL
Sbjct: 66  ENSQKRYVPHAEDSVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPRFEIGTL 125

Query: 550 LYVRVVKSNPGMNPELSCTDANGKAAEFGPLKGGYMFESSTGLARMLLSSPTCPVLEALG 729
           +Y RVVK+NPGMNPEL+CTDA+GKAAEFG LK GYMFE +TGL+RMLLSSPTCPVL+ALG
Sbjct: 126 IYARVVKANPGMNPELACTDASGKAAEFGALKDGYMFECTTGLSRMLLSSPTCPVLDALG 185

Query: 730 KKLSFEIAVGLNGRVWVNAESPSTVIVAANALIKSENLSGLQQRIMV 870
           KKLSFEIAVGLNGRVWV+A SP T IV ANA++ SE LSG QQRIMV
Sbjct: 186 KKLSFEIAVGLNGRVWVSAASPQTTIVVANAIMNSETLSGAQQRIMV 232