BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00014737
         (877 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     456   e-126
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   455   e-126
gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersi...   453   e-125
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     452   e-125
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    452   e-125

>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  456 bits (1174), Expect = e-126
 Identities = 218/291 (74%), Positives = 250/291 (85%)
 Frame = +2

Query: 2    ALGVADEVFSIMQDTMVYKLDQMVENSDMAFEVLTSSCNEQGNTAAMMLSAGFEPQIEPH 181
            +L V D +F  MQ  M+  LD+M+ +SD+AF+V+T+SC E GNTAA+MLSAGF+PQ EPH
Sbjct: 677  SLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPH 736

Query: 182  LKGMLCSIKSSQLEDLRTKARIFVPSGRWLMGCLDELGVLEEGQCFIQVSTPSLENCFSK 361
            L+GML SI++SQL DLR KARIFVPSGRWLMGCLDELG LE+GQCFIQVS+PSLENCF K
Sbjct: 737  LRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIK 796

Query: 362  HGPAFCKTRKNLKVIKGDVAIAKNPCLHPGDIRILEAVDAPGLHHLVDCLVFPQKGDRPH 541
            HGP F   +KNL+V+KG V IAKNPCLHPGD+RILEAVD PGLHHL DCLVFPQKGDRPH
Sbjct: 797  HGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPH 856

Query: 542  TNEASGSDLDGDLYFATWDGNLIPPGKRSWKPMDYSPAEAKKLPRQVTNEDIIDFFVKNM 721
            +NEASGSDLDGDLYF TWD NLIPP K+SW PM+Y PAE K++ RQV + DIIDFF KNM
Sbjct: 857  SNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQMGRQVNHMDIIDFFSKNM 916

Query: 722  VSEQLGPICNAHVVHSDLSENGALDEKCIELAKLAATAVDFPKTGKIVTMP 874
            V E LG ICNAHVVH+DLSE GALDEKC++LA+LAA AVDFPKTGK+VTMP
Sbjct: 917  VQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMP 967


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  455 bits (1171), Expect = e-126
 Identities = 218/291 (74%), Positives = 250/291 (85%)
 Frame = +2

Query: 2    ALGVADEVFSIMQDTMVYKLDQMVENSDMAFEVLTSSCNEQGNTAAMMLSAGFEPQIEPH 181
            +L V D +F  MQ  M+  L++M+ +SD+AF+V+T+SC E GNTAA+MLSAGF+PQ EPH
Sbjct: 677  SLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPH 736

Query: 182  LKGMLCSIKSSQLEDLRTKARIFVPSGRWLMGCLDELGVLEEGQCFIQVSTPSLENCFSK 361
            L+GML SI++SQL DLR KARIFVPSGRWLMGCLDELG LE+GQCFIQVS+PSLENCF K
Sbjct: 737  LRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIK 796

Query: 362  HGPAFCKTRKNLKVIKGDVAIAKNPCLHPGDIRILEAVDAPGLHHLVDCLVFPQKGDRPH 541
            HGP F   +KNL+V+KG V IAKNPCLHPGD+RILEAVD PGLHHL DCLVFPQKGDRPH
Sbjct: 797  HGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPH 856

Query: 542  TNEASGSDLDGDLYFATWDGNLIPPGKRSWKPMDYSPAEAKKLPRQVTNEDIIDFFVKNM 721
            +NEASGSDLDGDLYF TWD NLIPP K+SW PM+Y PAE K+L RQV + DIIDFF KNM
Sbjct: 857  SNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNM 916

Query: 722  VSEQLGPICNAHVVHSDLSENGALDEKCIELAKLAATAVDFPKTGKIVTMP 874
            V E LG ICNAHVVH+DLSE GALDEKC++LA+LAA AVDFPKTGK+VTMP
Sbjct: 917  VQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMP 967


>gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
          Length = 1197

 Score =  453 bits (1165), Expect = e-125
 Identities = 215/291 (73%), Positives = 252/291 (86%)
 Frame = +2

Query: 2    ALGVADEVFSIMQDTMVYKLDQMVENSDMAFEVLTSSCNEQGNTAAMMLSAGFEPQIEPH 181
            +L V DE+F  MQ  M+ KLD+++ +SD+AF+V+T+SC E GNTAA+MLSAGF+PQ EPH
Sbjct: 677  SLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPH 736

Query: 182  LKGMLCSIKSSQLEDLRTKARIFVPSGRWLMGCLDELGVLEEGQCFIQVSTPSLENCFSK 361
            L+GML SI+++QL DLR K R+FV SGRWLMGCLDELG LE+GQCFIQVS+PSLE CF K
Sbjct: 737  LRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQCFIQVSSPSLETCFVK 796

Query: 362  HGPAFCKTRKNLKVIKGDVAIAKNPCLHPGDIRILEAVDAPGLHHLVDCLVFPQKGDRPH 541
            HGP F + +KNL+V+KG V IAKNPCLHPGD+RILEAVD PGLHHL DCLVFPQKGDRPH
Sbjct: 797  HGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPH 856

Query: 542  TNEASGSDLDGDLYFATWDGNLIPPGKRSWKPMDYSPAEAKKLPRQVTNEDIIDFFVKNM 721
            +NEASGSDLDGDLYF TWD NLIPP K+SW PM Y+PAEAK+L RQV + DIIDFF+KNM
Sbjct: 857  SNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQLGRQVQHTDIIDFFLKNM 916

Query: 722  VSEQLGPICNAHVVHSDLSENGALDEKCIELAKLAATAVDFPKTGKIVTMP 874
            V E LG ICNAHVVH+DLSE GA+DEKC++LA+LAA AVDFPKTGK+VTMP
Sbjct: 917  VQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPKTGKLVTMP 967


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  452 bits (1162), Expect = e-125
 Identities = 217/291 (74%), Positives = 248/291 (85%)
 Frame = +2

Query: 2    ALGVADEVFSIMQDTMVYKLDQMVENSDMAFEVLTSSCNEQGNTAAMMLSAGFEPQIEPH 181
            +L V D +F  MQ  M+  LD+M+ +SD+AF+V+T+SC E GNTAA+MLSAGF+PQ EPH
Sbjct: 677  SLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPH 736

Query: 182  LKGMLCSIKSSQLEDLRTKARIFVPSGRWLMGCLDELGVLEEGQCFIQVSTPSLENCFSK 361
            L+GML SI++SQL DLR KARIFVPSGRWLMGCLDELG LE+GQCFIQVS+PSLENCF K
Sbjct: 737  LRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVK 796

Query: 362  HGPAFCKTRKNLKVIKGDVAIAKNPCLHPGDIRILEAVDAPGLHHLVDCLVFPQKGDRPH 541
            HGP F   +KNL+V+KG V IAKNPCLHPGD+RILEAVD P L HL DCLVFPQKGDRPH
Sbjct: 797  HGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPH 856

Query: 542  TNEASGSDLDGDLYFATWDGNLIPPGKRSWKPMDYSPAEAKKLPRQVTNEDIIDFFVKNM 721
            +NEASGSDLDGDLYF TWD NLIPP K+SW PM+Y PAE K+L RQV + DIIDFF KNM
Sbjct: 857  SNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNM 916

Query: 722  VSEQLGPICNAHVVHSDLSENGALDEKCIELAKLAATAVDFPKTGKIVTMP 874
            V E LG ICNAHVVH+DLSE GALDEKC++LA+LAA AVDFPKTGK+VTMP
Sbjct: 917  VQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMP 967


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  452 bits (1162), Expect = e-125
 Identities = 217/291 (74%), Positives = 248/291 (85%)
 Frame = +2

Query: 2    ALGVADEVFSIMQDTMVYKLDQMVENSDMAFEVLTSSCNEQGNTAAMMLSAGFEPQIEPH 181
            +L V D +F  MQ  M+  LD+M+ +SD+AF+V+T+SC E GNTAA+MLSAGF+PQ EPH
Sbjct: 677  SLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPH 736

Query: 182  LKGMLCSIKSSQLEDLRTKARIFVPSGRWLMGCLDELGVLEEGQCFIQVSTPSLENCFSK 361
            L+GML SI++SQL DLR KARIFVPSGRWLMGCLDELG LE+GQCFIQVS+PSLENCF K
Sbjct: 737  LRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVK 796

Query: 362  HGPAFCKTRKNLKVIKGDVAIAKNPCLHPGDIRILEAVDAPGLHHLVDCLVFPQKGDRPH 541
            HGP F   +KNL+V+KG V IAKNPCLHPGD+RILEAVD P L HL DCLVFPQKGDRPH
Sbjct: 797  HGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPH 856

Query: 542  TNEASGSDLDGDLYFATWDGNLIPPGKRSWKPMDYSPAEAKKLPRQVTNEDIIDFFVKNM 721
            +NEASGSDLDGDLYF TWD NLIPP K+SW PM+Y PAE K+L RQV + DIIDFF KNM
Sbjct: 857  SNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNM 916

Query: 722  VSEQLGPICNAHVVHSDLSENGALDEKCIELAKLAATAVDFPKTGKIVTMP 874
            V E LG ICNAHVVH+DLSE GALDEKC++LA+LAA AVDFPKTGK+VTMP
Sbjct: 917  VQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMP 967