BLASTX nr result
ID: Cimicifuga21_contig00014632
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00014632
(2140 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ... 551 e-154
emb|CBI32760.3| unnamed protein product [Vitis vinifera] 551 e-154
ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|2... 538 e-150
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [... 515 e-143
ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-... 477 e-132
>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 551 bits (1420), Expect = e-154
Identities = 306/539 (56%), Positives = 375/539 (69%), Gaps = 6/539 (1%)
Frame = +2
Query: 356 VTMLHEQATPAVAST-TSITPHFPMSVLLQEQHDEFRPLLHINVDKMS-RVTMENRQTDP 529
V MLH+Q PAVAS T+I FP SVLLQEQ DE+RP D+ + + T+E RQ +
Sbjct: 38 VLMLHDQVAPAVASIPTTIARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEI 97
Query: 530 GASFCGEKKRSETDQYIKDFERQLLYWPCSLF--PSLGPGEKQLMSTTA-QVIASDNDNL 700
S E+ + +QY+ +FERQLL P + PS GEK S++ + I +D +N
Sbjct: 98 VVS-ADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENS 156
Query: 701 VDVEPGDXXXXXXXXXXXXXXXXXXXXXXNLLGDDFAESLIGLESTSSTIQIPLEKXXXX 880
+DV+P D LLG D +S S+ +PLE+
Sbjct: 157 MDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVR 216
Query: 881 XXXXXXXXXXXXXGTSKPKVAICEAPRLKMVDIHRKMSEGFDPNDPLRLFLSGSGTRQLL 1060
PKVA+ E + ++ RK++EG+DP DPLRLFL G TR+LL
Sbjct: 217 STRLLERRSKKRRN---PKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLL 273
Query: 1061 TAKEESELFVQIKELARLEEVKKRLQSQFGREPTLIEWAEAVGMSCLDLQSHLHSGNRSR 1240
TAKEESEL VQI+EL RLEEVKKRLQS REPT++EWAEAVG+SC LQS LHSGNRSR
Sbjct: 274 TAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSR 333
Query: 1241 ERMTCANFRLVVHVAKRYNGWGMNLQDLLQEGSKGLMRSIEKFKPQAGCRFSTYAYWWIR 1420
+++ AN R+VVH+AK+Y G G+NLQDLLQEGS GLM S+EKFKP AGCRF++YAYWWIR
Sbjct: 334 QKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIR 393
Query: 1421 QSIRKSIFQNSRTIRLPENVYNLLRRVKNAKRQCIQEG-QEPTKEELARRIGITVDKLSS 1597
Q++RK+IFQ+SRTIRLPEN+Y+LL +VK AKR IQEG +PTKEE+A R+GIT++KL
Sbjct: 394 QAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQR 453
Query: 1598 LLASTRMPLSMQQPVWADQDTTFQEITADTEVESPNQCVEKQLMRQHVRNFLNILSPKER 1777
LL TRMPLSMQQPVWADQDTTFQE+TADT +E P+ V KQLMRQHVRN L++L+PKER
Sbjct: 454 LLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKER 513
Query: 1778 RIIRLRFGIEDGEQNSLSQIGSVFGISKERVRQLESRALDKLKKCLSSQGLEAYADLLV 1954
RIIRLRFGI DG +LS+IG VFG SKERVRQLE RAL KLK+CLSS GLE+Y DLLV
Sbjct: 514 RIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572
>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 551 bits (1420), Expect = e-154
Identities = 306/539 (56%), Positives = 375/539 (69%), Gaps = 6/539 (1%)
Frame = +2
Query: 356 VTMLHEQATPAVAST-TSITPHFPMSVLLQEQHDEFRPLLHINVDKMS-RVTMENRQTDP 529
V MLH+Q PAVAS T+I FP SVLLQEQ DE+RP D+ + + T+E RQ +
Sbjct: 27 VLMLHDQVAPAVASIPTTIARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEI 86
Query: 530 GASFCGEKKRSETDQYIKDFERQLLYWPCSLF--PSLGPGEKQLMSTTA-QVIASDNDNL 700
S E+ + +QY+ +FERQLL P + PS GEK S++ + I +D +N
Sbjct: 87 VVS-ADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENS 145
Query: 701 VDVEPGDXXXXXXXXXXXXXXXXXXXXXXNLLGDDFAESLIGLESTSSTIQIPLEKXXXX 880
+DV+P D LLG D +S S+ +PLE+
Sbjct: 146 MDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVR 205
Query: 881 XXXXXXXXXXXXXGTSKPKVAICEAPRLKMVDIHRKMSEGFDPNDPLRLFLSGSGTRQLL 1060
PKVA+ E + ++ RK++EG+DP DPLRLFL G TR+LL
Sbjct: 206 STRLLERRSKKRRN---PKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLL 262
Query: 1061 TAKEESELFVQIKELARLEEVKKRLQSQFGREPTLIEWAEAVGMSCLDLQSHLHSGNRSR 1240
TAKEESEL VQI+EL RLEEVKKRLQS REPT++EWAEAVG+SC LQS LHSGNRSR
Sbjct: 263 TAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSR 322
Query: 1241 ERMTCANFRLVVHVAKRYNGWGMNLQDLLQEGSKGLMRSIEKFKPQAGCRFSTYAYWWIR 1420
+++ AN R+VVH+AK+Y G G+NLQDLLQEGS GLM S+EKFKP AGCRF++YAYWWIR
Sbjct: 323 QKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIR 382
Query: 1421 QSIRKSIFQNSRTIRLPENVYNLLRRVKNAKRQCIQEG-QEPTKEELARRIGITVDKLSS 1597
Q++RK+IFQ+SRTIRLPEN+Y+LL +VK AKR IQEG +PTKEE+A R+GIT++KL
Sbjct: 383 QAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQR 442
Query: 1598 LLASTRMPLSMQQPVWADQDTTFQEITADTEVESPNQCVEKQLMRQHVRNFLNILSPKER 1777
LL TRMPLSMQQPVWADQDTTFQE+TADT +E P+ V KQLMRQHVRN L++L+PKER
Sbjct: 443 LLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKER 502
Query: 1778 RIIRLRFGIEDGEQNSLSQIGSVFGISKERVRQLESRALDKLKKCLSSQGLEAYADLLV 1954
RIIRLRFGI DG +LS+IG VFG SKERVRQLE RAL KLK+CLSS GLE+Y DLLV
Sbjct: 503 RIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 561
>ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|222833385|gb|EEE71862.1|
predicted protein [Populus trichocarpa]
Length = 535
Score = 538 bits (1387), Expect = e-150
Identities = 304/541 (56%), Positives = 366/541 (67%), Gaps = 4/541 (0%)
Frame = +2
Query: 341 TLGPRVTMLHEQATPAVAS--TTSITPHFPMSVLLQEQHDEFRPLLHI-NVDKMSRVTME 511
+L V +L EQATPAV+S TTS HFP SVLLQEQ DEFRPL +I D+ S+ T++
Sbjct: 23 SLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRASQATLD 82
Query: 512 NRQTDPGASFCGEKKRSETDQYIKDFERQLLYWPCSLFPSLGPGEKQLMSTTAQVIASDN 691
R+T+ G S K E DQ +++FE QL +WP +
Sbjct: 83 RRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYW--------------------NLT 122
Query: 692 DNLVDVEPGDXXXXXXXXXXXXXXXXXXXXXXNLLGDDFAESLIGLESTSSTIQIPLEKX 871
D L+DVEP + L D+ + L L STSS+ LE+
Sbjct: 123 DKLIDVEPTNVINLAKRALSASKHAA-------FLADNNTD-LDNLASTSSS-SFSLEEV 173
Query: 872 XXXXXXXXXXXXXXXXGTSKPKVAICEAPRLKMVDIHRKMSEGFDPNDPLRLFLSGSGTR 1051
K K I E K DI +++S+GFDPNDPLRLFL G T+
Sbjct: 174 KIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQKRLSQGFDPNDPLRLFLWGPETK 233
Query: 1052 QLLTAKEESELFVQIKELARLEEVKKRLQSQFGREPTLIEWAEAVGMSCLDLQSHLHSGN 1231
QLLTAKEE EL QI++L LE VK RL+SQFGREPTL+EWA+AVG+SC L+ LHSGN
Sbjct: 234 QLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGN 293
Query: 1232 RSRERMTCANFRLVVHVAKRYNGWGMNLQDLLQEGSKGLMRSIEKFKPQAGCRFSTYAYW 1411
RSRE++ AN R+VVH+AKRY G+ LQDLLQEG+ GLM+SIEKFKPQAGCRF+TYAYW
Sbjct: 294 RSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYW 353
Query: 1412 WIRQSIRKSIFQNSRTIRLPENVYNLLRRVKNAKRQCIQEG-QEPTKEELARRIGITVDK 1588
WIRQ+I K+IFQ+SRTIRLPENVY LL +V AKR IQEG +PT EE+ARR+GI +DK
Sbjct: 354 WIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDK 413
Query: 1589 LSSLLASTRMPLSMQQPVWADQDTTFQEITADTEVESPNQCVEKQLMRQHVRNFLNILSP 1768
L LL TR PLSMQQ VW+DQ+TTFQEITADTE+E P+ V KQLMR+H+R LNILS
Sbjct: 414 LEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIPDMSVAKQLMRKHIRGLLNILSL 473
Query: 1769 KERRIIRLRFGIEDGEQNSLSQIGSVFGISKERVRQLESRALDKLKKCLSSQGLEAYADL 1948
KERRIIRLRFGIEDG+Q SLS+IG+VFG+SKERVRQLESRAL KLK+C+ S GL+AYADL
Sbjct: 474 KERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESRALYKLKQCVGSHGLDAYADL 533
Query: 1949 L 1951
L
Sbjct: 534 L 534
>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 548
Score = 515 bits (1327), Expect = e-143
Identities = 295/537 (54%), Positives = 360/537 (67%), Gaps = 4/537 (0%)
Frame = +2
Query: 356 VTMLHEQATPAVAS--TTSITPHFPMSVLLQEQHDEFRPLLHI-NVDKMSRVTMENRQTD 526
V MLHEQA PAV S TTSI +FP SVLLQEQ DEFRPLL+I DK + T++ +Q D
Sbjct: 35 VFMLHEQAVPAVTSAPTTSIARNFPTSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMD 94
Query: 527 PGASFCGEKKRSETDQYIKDFERQLLYWPCSLFPSLGPGEKQLMSTTAQVIASDNDNLVD 706
PG S + + D QL+ L +L S T Q I ++ D L+
Sbjct: 95 PGTS--------DQEGICSDVLDQLI-----LHSNLS------WSLTMQSITTNTDELMV 135
Query: 707 VEPGDXXXXXXXXXXXXXXXXXXXXXXNLLGDDFAESLIGLESTSSTIQIPLEKXXXXXX 886
VEP + L D + GLE T + LE+
Sbjct: 136 VEPTNVIDLARKALSASKEAALLAQKCANLDDTVST---GLEPTDLS-NFSLEEVKTVRS 191
Query: 887 XXXXXXXXXXXGTSKPKVAICEAPRLKMVDIHRKMSEGFDPNDPLRLFLSGSGTRQLLTA 1066
+K K E + + +K++EGFDP DPLRLFL G T+QLLTA
Sbjct: 192 TRRLERQSKNRRVTKTKEIFHEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTA 251
Query: 1067 KEESELFVQIKELARLEEVKKRLQSQFGREPTLIEWAEAVGMSCLDLQSHLHSGNRSRER 1246
KEESEL Q+++L LE VK++ + QFGR+PTL+EWA+AVG+S +QS LHSGNRSRE+
Sbjct: 252 KEESELIGQVQDLMSLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREK 311
Query: 1247 MTCANFRLVVHVAKRYNGWGMNLQDLLQEGSKGLMRSIEKFKPQAGCRFSTYAYWWIRQS 1426
+ AN R+VVH+AK+Y G G++LQDLLQEGS GLM+SIEKFKPQ GCRF+TYAYWWIRQ+
Sbjct: 312 LINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQT 371
Query: 1427 IRKSIFQNSRTIRLPENVYNLLRRVKNAKRQCIQEG-QEPTKEELARRIGITVDKLSSLL 1603
+RK+IFQ+SRTIRLPENVY+ L +V AKR I EG PTKEELA+RIGIT +L LL
Sbjct: 372 VRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLL 431
Query: 1604 ASTRMPLSMQQPVWADQDTTFQEITADTEVESPNQCVEKQLMRQHVRNFLNILSPKERRI 1783
RMPLSMQQ VWADQ+TTFQEITAD EVE P CV KQLMR+HV + LNIL+P+ER+I
Sbjct: 432 YMARMPLSMQQTVWADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKI 491
Query: 1784 IRLRFGIEDGEQNSLSQIGSVFGISKERVRQLESRALDKLKKCLSSQGLEAYADLLV 1954
IRLR+GIEDG++ SLS+IGSVFG+SKERVRQLESRAL KLK+CL+S GLEAYADLLV
Sbjct: 492 IRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQCLASHGLEAYADLLV 548
>ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 477 bits (1227), Expect = e-132
Identities = 275/543 (50%), Positives = 342/543 (62%), Gaps = 10/543 (1%)
Frame = +2
Query: 356 VTMLHEQATPAVASTTS--ITPHFPMSVLLQEQHDEFRPLLHINV-DKMSRVTMENRQTD 526
V MLHEQA+P VAS +S +FP SVLL EQ DE+RPLLH++ DK S+ + RQ D
Sbjct: 34 VLMLHEQASPTVASWSSNFSAQNFPASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMD 93
Query: 527 PGASFCGEKKRSETDQYIKDFERQLLYWPCSLFPSLGPGEKQLMSTTAQVIASDNDNLVD 706
+ E DQ + DF + L +WP S GE ST V
Sbjct: 94 T-VTVHEENNTENADQVVLDFRKHLHHWPNLQLTSSQIGEVAASSTLEHVSVDLERRPNG 152
Query: 707 VEPGDXXXXXXXXXXXXXXXXXXXXXXNLLGDDFAESLIGLESTSSTIQIPLEKXXXXXX 886
V+ ++ DD SL +++S + +
Sbjct: 153 VQFNGVSLAKKALSTSKQESSVVEDLKSIKADDVPFSL----ASTSLADPSIGRNKTVRS 208
Query: 887 XXXXXXXXXXXGTSKPKVAICEAPRLKMVDIHRKM------SEGFDPNDPLRLFLSGSGT 1048
K KV E + D K+ +E D +DPLRLFL G T
Sbjct: 209 TRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPET 268
Query: 1049 RQLLTAKEESELFVQIKELARLEEVKKRLQSQFGREPTLIEWAEAVGMSCLDLQSHLHSG 1228
+QLLT ++ES+L QI++L RLEEVK LQSQFGREPT+ EWAE G++C LQS LHSG
Sbjct: 269 KQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSG 328
Query: 1229 NRSRERMTCANFRLVVHVAKRYNGWGMNLQDLLQEGSKGLMRSIEKFKPQAGCRFSTYAY 1408
NRSRE++ AN R+VVHVAK Y G G++LQDLLQEGS GLM+S+EKF P AG RF YA+
Sbjct: 329 NRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAF 388
Query: 1409 WWIRQSIRKSIFQNSRTIRLPENVYNLLRRVKNAKRQCIQEGQ-EPTKEELARRIGITVD 1585
WWIRQ+IRK++F++SRTIRLPE V+ LL +V AK+ IQEG PTKEELARR+G+TV+
Sbjct: 389 WWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVE 448
Query: 1586 KLSSLLASTRMPLSMQQPVWADQDTTFQEITADTEVESPNQCVEKQLMRQHVRNFLNILS 1765
K+ LL S R+P+SMQQ VWADQ+TTFQEITAD VE+ + VEKQLMR+HV N L++L
Sbjct: 449 KIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLH 508
Query: 1766 PKERRIIRLRFGIEDGEQNSLSQIGSVFGISKERVRQLESRALDKLKKCLSSQGLEAYAD 1945
PKERRIIRLR+G EDGEQ SLS+IG +FG+SKERVRQLE RAL KLKKCL QGL+AY D
Sbjct: 509 PKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVD 568
Query: 1946 LLV 1954
LL+
Sbjct: 569 LLL 571