BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00014593
         (463 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37903.3| unnamed protein product [Vitis vinifera]              211   5e-53
ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containi...   211   5e-53
ref|XP_002528283.1| pentatricopeptide repeat-containing protein,...   210   1e-52
ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containi...   189   3e-46
ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containi...   189   3e-46

>emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  211 bits (537), Expect = 5e-53
 Identities = 100/146 (68%), Positives = 124/146 (84%)
 Frame = +1

Query: 22  SLKLFSDMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFKPNTIVVSSLID 201
           +L+LF+ M +  +RPDQFTFSS LCACASIASLKHGK IH +L+R  F+PNTIVVS+LID
Sbjct: 308 ALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALID 367

Query: 202 MYSKCGSLGVARFVFDQMGDKLDAVLWNTMISAMAQHGLGEESIKLFHDMIRVGTKPNRI 381
           MYSKCGSLG+ R VFD MG+KLD VLWNT+ISA+AQHG GEE+I++  DM+R G KP++I
Sbjct: 368 MYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKI 427

Query: 382 TLVVMLNACSHSGLVEEGIQLFEFMT 459
           T VV+LNACSHSGLV++G+  FE M+
Sbjct: 428 TFVVILNACSHSGLVQQGLNFFESMS 453



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 39/145 (26%), Positives = 80/145 (55%)
 Frame = +1

Query: 22  SLKLFSDMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFKPNTIVVSSLID 201
           +L+ +S+    GI+ + F+F+  L  C  +  +   + +H  ++   F  N ++ SS++D
Sbjct: 176 ALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLD 235

Query: 202 MYSKCGSLGVARFVFDQMGDKLDAVLWNTMISAMAQHGLGEESIKLFHDMIRVGTKPNRI 381
            Y KCG +G AR +FD+M  + D + W TM+S  A+ G  + + +LF +M     + N +
Sbjct: 236 AYVKCGLMGDARKLFDEMSAR-DVLAWTTMVSGYAKWGDMKSANELFVEM----PEKNPV 290

Query: 382 TLVVMLNACSHSGLVEEGIQLFEFM 456
           +   +++  + +G+  + ++LF  M
Sbjct: 291 SWTALISGYARNGMGHKALELFTKM 315



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 31/154 (20%)
 Frame = +1

Query: 40  DMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFK-PNTIVVSSLIDMYSKC 216
           ++  RG+R D  T +S L  CA   +L+ GK +H HL  T  K P T + + LI+MY+KC
Sbjct: 49  NLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKC 108

Query: 217 GSLGVARFVFDQMG---------------------------DKL---DAVLWNTMISAMA 306
           G    AR VFD+M                            DK+   D V WNTM+ A A
Sbjct: 109 GKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHA 168

Query: 307 QHGLGEESIKLFHDMIRVGTKPNRITLVVMLNAC 408
           Q G  +E+++ + +  ++G + N  +   +L  C
Sbjct: 169 QCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVC 202


>ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  211 bits (537), Expect = 5e-53
 Identities = 100/146 (68%), Positives = 124/146 (84%)
 Frame = +1

Query: 22  SLKLFSDMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFKPNTIVVSSLID 201
           +L+LF+ M +  +RPDQFTFSS LCACASIASLKHGK IH +L+R  F+PNTIVVS+LID
Sbjct: 308 ALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALID 367

Query: 202 MYSKCGSLGVARFVFDQMGDKLDAVLWNTMISAMAQHGLGEESIKLFHDMIRVGTKPNRI 381
           MYSKCGSLG+ R VFD MG+KLD VLWNT+ISA+AQHG GEE+I++  DM+R G KP++I
Sbjct: 368 MYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKI 427

Query: 382 TLVVMLNACSHSGLVEEGIQLFEFMT 459
           T VV+LNACSHSGLV++G+  FE M+
Sbjct: 428 TFVVILNACSHSGLVQQGLNFFESMS 453



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 39/145 (26%), Positives = 80/145 (55%)
 Frame = +1

Query: 22  SLKLFSDMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFKPNTIVVSSLID 201
           +L+ +S+    GI+ + F+F+  L  C  +  +   + +H  ++   F  N ++ SS++D
Sbjct: 176 ALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLD 235

Query: 202 MYSKCGSLGVARFVFDQMGDKLDAVLWNTMISAMAQHGLGEESIKLFHDMIRVGTKPNRI 381
            Y KCG +G AR +FD+M  + D + W TM+S  A+ G  + + +LF +M     + N +
Sbjct: 236 AYVKCGLMGDARKLFDEMSAR-DVLAWTTMVSGYAKWGDMKSANELFVEM----PEKNPV 290

Query: 382 TLVVMLNACSHSGLVEEGIQLFEFM 456
           +   +++  + +G+  + ++LF  M
Sbjct: 291 SWTALISGYARNGMGHKALELFTKM 315



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 31/154 (20%)
 Frame = +1

Query: 40  DMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFK-PNTIVVSSLIDMYSKC 216
           ++  RG+R D  T +S L  CA   +L+ GK +H HL  T  K P T + + LI+MY+KC
Sbjct: 49  NLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKC 108

Query: 217 GSLGVARFVFDQMG---------------------------DKL---DAVLWNTMISAMA 306
           G    AR VFD+M                            DK+   D V WNTM+ A A
Sbjct: 109 GKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHA 168

Query: 307 QHGLGEESIKLFHDMIRVGTKPNRITLVVMLNAC 408
           Q G  +E+++ + +  ++G + N  +   +L  C
Sbjct: 169 QCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVC 202


>ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532320|gb|EEF34121.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 602

 Score =  210 bits (534), Expect = 1e-52
 Identities = 101/146 (69%), Positives = 123/146 (84%)
 Frame = +1

Query: 22  SLKLFSDMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFKPNTIVVSSLID 201
           +L+LF+ M    IRPDQFTFSS LCA ASIASL HGK IH +LIRT  +PNTIVVSSLID
Sbjct: 299 ALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLID 358

Query: 202 MYSKCGSLGVARFVFDQMGDKLDAVLWNTMISAMAQHGLGEESIKLFHDMIRVGTKPNRI 381
           MYSKCG L V R VFD MGDK D VLWNT+IS++AQHG G+E+I++F DM+R+G KP+RI
Sbjct: 359 MYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRI 418

Query: 382 TLVVMLNACSHSGLVEEGIQLFEFMT 459
           TL+V+LNACSHSGLV+EG++L+E +T
Sbjct: 419 TLIVLLNACSHSGLVQEGLRLYESIT 444



 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 31/163 (19%)
 Frame = +1

Query: 13  SIASLKLFSDMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFK-PNTIVVS 189
           +I+SL L S     GIR    T +  L  CA+  SLK GK +H HL  T  K PNT + +
Sbjct: 34  AISSLGLLS---RNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLAN 90

Query: 190 SLIDMYSKCGSLGVARFVFDQMG---------------------------DKL---DAVL 279
            LI+MYSKCG    A  VFD+M                            DK+   D V 
Sbjct: 91  HLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVS 150

Query: 280 WNTMISAMAQHGLGEESIKLFHDMIRVGTKPNRITLVVMLNAC 408
           WNTM+ A A+ G   ++++ + ++ R+G   N  +   +LN C
Sbjct: 151 WNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNIC 193



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 30/175 (17%)
 Frame = +1

Query: 22  SLKLFSDMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFKPNTIVVSSLID 201
           +L+ + ++   GI  ++++F+  L  C  +  L+  K  H  ++   F  N ++ SS++D
Sbjct: 167 ALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLD 226

Query: 202 MYSKCGSLGVARFVFDQM------------------GD------------KLDAVLWNTM 291
            Y+KC  +G AR +FD+M                  GD            + + V W ++
Sbjct: 227 AYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSL 286

Query: 292 ISAMAQHGLGEESIKLFHDMIRVGTKPNRITLVVMLNACSHSGLVEEGIQLFEFM 456
           I+  A+H LG ++++LF  M+ +  +P++ T    L A +    +  G Q+  ++
Sbjct: 287 IAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYL 341


>ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  189 bits (479), Expect = 3e-46
 Identities = 90/146 (61%), Positives = 118/146 (80%)
 Frame = +1

Query: 22  SLKLFSDMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFKPNTIVVSSLID 201
           +L  F+ M   GI P+Q+TFSS LCACASIA+LKHGK +H +LIRT F+ NTIVVSSLID
Sbjct: 311 ALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLID 370

Query: 202 MYSKCGSLGVARFVFDQMGDKLDAVLWNTMISAMAQHGLGEESIKLFHDMIRVGTKPNRI 381
           MYSKCG L  +  VF  MG+K D V+WNTMISA+AQ+G GE+++++F+DM+  G KP+RI
Sbjct: 371 MYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRI 430

Query: 382 TLVVMLNACSHSGLVEEGIQLFEFMT 459
           T +V+L+ACSHSGLV+EG++ F+ MT
Sbjct: 431 TFIVILSACSHSGLVQEGLRFFKAMT 456



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 30/175 (17%)
 Frame = +1

Query: 22  SLKLFSDMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFKPNTIVVSSLID 201
           ++ L+ D     +  + F+F+  L  C  +  L+  K +H  ++   F  N ++ SS++D
Sbjct: 179 AIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVD 238

Query: 202 MYSKCGSLGVARFVFDQM------------------GDKLDA------------VLWNTM 291
            YSKCG +  AR +FD+M                  GD   A            V W+ +
Sbjct: 239 AYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSAL 298

Query: 292 ISAMAQHGLGEESIKLFHDMIRVGTKPNRITLVVMLNACSHSGLVEEGIQLFEFM 456
           IS  A++ LG E++  F  M++ G  P + T    L AC+    ++ G Q+  ++
Sbjct: 299 ISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYL 353



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 52/160 (32%), Positives = 67/160 (41%), Gaps = 31/160 (19%)
 Frame = +1

Query: 22  SLKLFSDMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFK-PNTIVVSSLI 198
           +L     +  RGIR     F   L  CA     K GK +H HL  T FK P TIV + LI
Sbjct: 46  ALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLI 105

Query: 199 DMYSKCGSLGVARFVFDQM------------------GD------------KLDAVLWNT 288
            MY +CG    AR VFD+M                  GD            + D V WNT
Sbjct: 106 GMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNT 165

Query: 289 MISAMAQHGLGEESIKLFHDMIRVGTKPNRITLVVMLNAC 408
           ++ A A+ G   E+I L+ D  R+    N  +   +L  C
Sbjct: 166 IVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILC 205


>ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  189 bits (479), Expect = 3e-46
 Identities = 90/146 (61%), Positives = 118/146 (80%)
 Frame = +1

Query: 22  SLKLFSDMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFKPNTIVVSSLID 201
           +L  F+ M   GI P+Q+TFSS LCACASIA+LKHGK +H +LIRT F+ NTIVVSSLID
Sbjct: 311 ALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLID 370

Query: 202 MYSKCGSLGVARFVFDQMGDKLDAVLWNTMISAMAQHGLGEESIKLFHDMIRVGTKPNRI 381
           MYSKCG L  +  VF  MG+K D V+WNTMISA+AQ+G GE+++++F+DM+  G KP+RI
Sbjct: 371 MYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRI 430

Query: 382 TLVVMLNACSHSGLVEEGIQLFEFMT 459
           T +V+L+ACSHSGLV+EG++ F+ MT
Sbjct: 431 TFIVILSACSHSGLVQEGLRFFKAMT 456



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 30/175 (17%)
 Frame = +1

Query: 22  SLKLFSDMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFKPNTIVVSSLID 201
           ++ L+ D     +  + F+F+  L  C  +  L+  K +H  ++   F  N ++ SS++D
Sbjct: 179 AIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVD 238

Query: 202 MYSKCGSLGVARFVFDQM------------------GDKLDA------------VLWNTM 291
            Y+KCG +  AR +FD+M                  GD   A            V W+ +
Sbjct: 239 AYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSAL 298

Query: 292 ISAMAQHGLGEESIKLFHDMIRVGTKPNRITLVVMLNACSHSGLVEEGIQLFEFM 456
           IS  A++ LG E++  F  M++ G  P + T    L AC+    ++ G Q+  ++
Sbjct: 299 ISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYL 353



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 51/160 (31%), Positives = 67/160 (41%), Gaps = 31/160 (19%)
 Frame = +1

Query: 22  SLKLFSDMTMRGIRPDQFTFSSTLCACASIASLKHGKAIHNHLIRTVFK-PNTIVVSSLI 198
           +L     +  RG+R     F   L  CA     K GK +H HL  T FK P TIV + LI
Sbjct: 46  ALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLI 105

Query: 199 DMYSKCGSLGVARFVFDQM------------------GD------------KLDAVLWNT 288
            MY +CG    AR VFD+M                  GD            + D V WNT
Sbjct: 106 GMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNT 165

Query: 289 MISAMAQHGLGEESIKLFHDMIRVGTKPNRITLVVMLNAC 408
           ++ A A+ G   E+I L+ D  R+    N  +   +L  C
Sbjct: 166 IVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILC 205