BLASTX nr result
ID: Cimicifuga21_contig00014417
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00014417
(1552 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI24939.3| unnamed protein product [Vitis vinifera] 640 0.0
ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containi... 634 e-179
ref|XP_003599420.1| Pentatricopeptide repeat-containing protein ... 583 e-164
ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containi... 578 e-162
ref|XP_002517779.1| pentatricopeptide repeat-containing protein,... 574 e-161
>emb|CBI24939.3| unnamed protein product [Vitis vinifera]
Length = 485
Score = 640 bits (1650), Expect = 0.0
Identities = 318/487 (65%), Positives = 396/487 (81%), Gaps = 8/487 (1%)
Frame = +1
Query: 7 MELHLPHTSNLRPSSSI---FTTSPIRLRVHSKPTKITKKSTFFSVKSAK----NSVHRP 165
ME HL ++LR SSSI +TT +++ +KPT F V++ K +S +
Sbjct: 1 MEPHLLDPTSLRWSSSIPLTYTTCSLKVLKETKPTS---NPPFLFVRAGKRSSGSSQNGL 57
Query: 166 QKESKKTLSRILRTEFAVKGIERKAISAKSTTLWPKSVLEALDEAINSNQWESALKIFEL 345
Q++ KK LSRILRTE A+ GIERKA S K +TLWPK+VLEALDEAI N++ESALKIF L
Sbjct: 58 QRQPKKDLSRILRTEAAISGIERKANSRKYSTLWPKAVLEALDEAIRENRYESALKIFGL 117
Query: 346 LRKQQWYQPKCQTYTQLFVMLGKCKQPAHAKLLFEKMLLEGLKPSIDVYTSLVSVFGHSG 525
LRKQ WY+P+CQTYT+L +MLGKCKQP A LLFE ML EGL+P++DVYT+LVS +GHSG
Sbjct: 118 LRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSG 177
Query: 526 KFNEAFIIVDEMKSVTDCKPDAYTYSVLINCCSKYRRFDLIERALGEMSYQGIKFGIVAY 705
+ ++AF V++MKSV+DCKPD YTYS+LI CC+ RFDLIER EMSY GI+ V Y
Sbjct: 178 QLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTY 237
Query: 706 NTIIDGYGKAEMFELMENSLTDMIENES-RPDVYTLNSFLWAYGNVGRIKEMERWYDEFQ 882
NTIIDGYGKA+MFELME+SLT+MIE+ + PD++TLNSF+WAYGN G+I++ME+WYDEFQ
Sbjct: 238 NTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQ 297
Query: 883 IMGIQPDIKTFNILIRSYGKAGMHDKLETVMDFMKKRFFSPTTVTFNIIIEMFGRAGNID 1062
+MGI+PDIKTFNILIRSYGKA M++K+ +VM+FMKKRF+SPT VTFNI+IEMFGR GNI+
Sbjct: 298 LMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIE 357
Query: 1063 KMEYYFRMMKYRGIKPNSITYCSLVSSYSNAGELKKISSILRQVENSDVILDTPFFNCII 1242
KME +F MK++G+KPNSITYCSLVS+YS AG LKK+ SILRQ+ENSDV LDTPFFNC++
Sbjct: 358 KMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVL 417
Query: 1243 SVYGQAGKLERMEKMFVEMKQRKCSPDNITFATMIKAYNAQGMIEAVKELEISMLDRKED 1422
S YGQAG +ERM ++F+ MK+RKC PDNITFATMI+AYNAQGMIEA + LE++M+ K
Sbjct: 418 SAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNAQGMIEAAQNLEVNMITTKNK 477
Query: 1423 SVSRLIG 1443
S +RLIG
Sbjct: 478 SGTRLIG 484
>ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein At3g53170-like
[Vitis vinifera]
Length = 538
Score = 634 bits (1636), Expect = e-179
Identities = 315/484 (65%), Positives = 393/484 (81%), Gaps = 8/484 (1%)
Frame = +1
Query: 7 MELHLPHTSNLRPSSSI---FTTSPIRLRVHSKPTKITKKSTFFSVKSAK----NSVHRP 165
ME HL ++LR SSSI +TT +++ +KPT F V++ K +S +
Sbjct: 1 MEPHLLDPTSLRWSSSIPLTYTTCSLKVLKETKPTS---NPPFLFVRAGKRSSGSSQNGL 57
Query: 166 QKESKKTLSRILRTEFAVKGIERKAISAKSTTLWPKSVLEALDEAINSNQWESALKIFEL 345
Q++ KK LSRILRTE A+ GIERKA S K +TLWPK+VLEALDEAI N++ESALKIF L
Sbjct: 58 QRQPKKDLSRILRTEAAISGIERKANSRKYSTLWPKAVLEALDEAIRENRYESALKIFGL 117
Query: 346 LRKQQWYQPKCQTYTQLFVMLGKCKQPAHAKLLFEKMLLEGLKPSIDVYTSLVSVFGHSG 525
LRKQ WY+P+CQTYT+L +MLGKCKQP A LLFE ML EGL+P++DVYT+LVS +GHSG
Sbjct: 118 LRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSG 177
Query: 526 KFNEAFIIVDEMKSVTDCKPDAYTYSVLINCCSKYRRFDLIERALGEMSYQGIKFGIVAY 705
+ ++AF V++MKSV+DCKPD YTYS+LI CC+ RFDLIER EMSY GI+ V Y
Sbjct: 178 QLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTY 237
Query: 706 NTIIDGYGKAEMFELMENSLTDMIENES-RPDVYTLNSFLWAYGNVGRIKEMERWYDEFQ 882
NTIIDGYGKA+MFELME+SLT+MIE+ + PD++TLNSF+WAYGN G+I++ME+WYDEFQ
Sbjct: 238 NTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQ 297
Query: 883 IMGIQPDIKTFNILIRSYGKAGMHDKLETVMDFMKKRFFSPTTVTFNIIIEMFGRAGNID 1062
+MGI+PDIKTFNILIRSYGKA M++K+ +VM+FMKKRF+SPT VTFNI+IEMFGR GNI+
Sbjct: 298 LMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIE 357
Query: 1063 KMEYYFRMMKYRGIKPNSITYCSLVSSYSNAGELKKISSILRQVENSDVILDTPFFNCII 1242
KME +F MK++G+KPNSITYCSLVS+YS AG LKK+ SILRQ+ENSDV LDTPFFNC++
Sbjct: 358 KMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVL 417
Query: 1243 SVYGQAGKLERMEKMFVEMKQRKCSPDNITFATMIKAYNAQGMIEAVKELEISMLDRKED 1422
S YGQAG +ERM ++F+ MK+RKC PDNITFATMI+AYNAQGMIEA + LE++M+ K
Sbjct: 418 SAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNAQGMIEAAQNLEVNMITTKNK 477
Query: 1423 SVSR 1434
S +R
Sbjct: 478 SGTR 481
>ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488468|gb|AES69671.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 511
Score = 583 bits (1504), Expect = e-164
Identities = 286/465 (61%), Positives = 363/465 (78%), Gaps = 5/465 (1%)
Frame = +1
Query: 46 SSSIFTTSPIRLRVHSKPTKITKKSTFFSV----KSAKNSVHRPQKESKKTLSRILRTEF 213
SSSI +++PI P K S+ F V +S+K S QK+ KK LSRILRTE
Sbjct: 19 SSSISSSAPITCSTKF-PNKNHFHSSSFRVYSLKRSSKPSYEGLQKDPKKDLSRILRTEA 77
Query: 214 AVKGIERKAISAKSTTLWPKSVLEALDEAINSNQWESALKIFELLRKQQWYQPKCQTYTQ 393
A+KG+E KA S K LWPK+VLEALD+AI QW++AL IFELLR Q WY+P+CQTYT+
Sbjct: 78 AIKGVENKAKSWKHKQLWPKAVLEALDDAIKGCQWQNALMIFELLRNQYWYEPRCQTYTK 137
Query: 394 LFVMLGKCKQPAHAKLLFEKMLLEGLKPSIDVYTSLVSVFGHSGKFNEAFIIVDEMKSVT 573
L +ML KCKQP A L+E ML EGLKP++DV T+LVS +G SG F AF +++MKSV
Sbjct: 138 LLMMLSKCKQPKEASQLYETMLFEGLKPTVDVLTALVSAYGQSGLFRHAFSTIEDMKSVV 197
Query: 574 DCKPDAYTYSVLINCCSKYRRFDLIERALGEMSYQGIKFGIVAYNTIIDGYGKAEMFELM 753
DCKPD YTYSVLI+CC+K+RRFDLIER L +MSY GI+ V YN+IIDGYGKA MFE M
Sbjct: 198 DCKPDVYTYSVLISCCAKFRRFDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQM 257
Query: 754 ENSLTDMIENES-RPDVYTLNSFLWAYGNVGRIKEMERWYDEFQIMGIQPDIKTFNILIR 930
ENSLTDMIENE+ +PDV+TLNS + +YGN G+I +ME+WYDEFQ+M I+PDIKTFN++I+
Sbjct: 258 ENSLTDMIENENCQPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKTFNMMIK 317
Query: 931 SYGKAGMHDKLETVMDFMKKRFFSPTTVTFNIIIEMFGRAGNIDKMEYYFRMMKYRGIKP 1110
SYGKAGM+DK+++VMDFM++RFF+PT VT+N +IE++G+AG I+KM+ +F+ MK+ G+KP
Sbjct: 318 SYGKAGMYDKMKSVMDFMERRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKP 377
Query: 1111 NSITYCSLVSSYSNAGELKKISSILRQVENSDVILDTPFFNCIISVYGQAGKLERMEKMF 1290
NS+TYCSLV++YS AG ++KI SILR VENSDVILDTPFFNCIIS YGQ G L++M ++F
Sbjct: 378 NSVTYCSLVNAYSKAGLIRKIDSILRHVENSDVILDTPFFNCIISAYGQVGDLKKMGELF 437
Query: 1291 VEMKQRKCSPDNITFATMIKAYNAQGMIEAVKELEISMLDRKEDS 1425
+ M+ RKC PD TF MI+AYN QG+ EA K LE M+ K+ S
Sbjct: 438 LAMRARKCEPDRTTFTCMIQAYNTQGITEAAKNLETMMISAKDSS 482
>ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53170-like
[Glycine max]
Length = 481
Score = 578 bits (1489), Expect = e-162
Identities = 282/471 (59%), Positives = 363/471 (77%), Gaps = 2/471 (0%)
Frame = +1
Query: 37 LRPSSSIFTTSPIRLRVHSKPTKITKKSTFFSVK-SAKNSVHRPQKESKKTLSRILRTEF 213
LR SSSI + +P + P K + S+K S+K + K+ K LSRILRTE
Sbjct: 10 LRWSSSISSATPFTSSTNRSPPKTRRGFRVESLKRSSKPASAELVKDPNKDLSRILRTEA 69
Query: 214 AVKGIERKAISAKSTTLWPKSVLEALDEAINSNQWESALKIFELLRKQQWYQPKCQTYTQ 393
A++G+ KA S+ LWPK++LE+LD+AI + SAL+IF LLRKQ WYQP+C+TY +
Sbjct: 70 AIRGVHNKAKSSSHKQLWPKALLESLDDAIKRCRSHSALEIFALLRKQYWYQPRCRTYAK 129
Query: 394 LFVMLGKCKQPAHAKLLFEKMLLEGLKPSIDVYTSLVSVFGHSGKFNEAFIIVDEMKSVT 573
L +MLGKC+QP A LLFE ML EGLKP++DVYT+LVS +G SG ++AF V++MKSV
Sbjct: 130 LLMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALVSAYGQSGLLDQAFSTVEDMKSVV 189
Query: 574 DCKPDAYTYSVLINCCSKYRRFDLIERALGEMSYQGIKFGIVAYNTIIDGYGKAEMFELM 753
DC+PD YTYS+LI CC+K+RRFDLIE L EMSY GIK V YN+IIDGYGKA MFE M
Sbjct: 190 DCEPDVYTYSILIRCCAKFRRFDLIEHVLAEMSYLGIKCNCVTYNSIIDGYGKASMFEQM 249
Query: 754 ENSLTDMIEN-ESRPDVYTLNSFLWAYGNVGRIKEMERWYDEFQIMGIQPDIKTFNILIR 930
+++L DMIEN S PDV+TLNSF+ AYGN G+I +ME+WYDEFQ+MGI+PDI TFN +I+
Sbjct: 250 DDALNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKMEKWYDEFQLMGIKPDITTFNTMIK 309
Query: 931 SYGKAGMHDKLETVMDFMKKRFFSPTTVTFNIIIEMFGRAGNIDKMEYYFRMMKYRGIKP 1110
SYGKAGM++K++TVMDFM+KRFF+PT VT+N +IE+FG+AG I+KM+ +F MK+ G+KP
Sbjct: 310 SYGKAGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEVFGKAGEIEKMDQHFLKMKHLGVKP 369
Query: 1111 NSITYCSLVSSYSNAGELKKISSILRQVENSDVILDTPFFNCIISVYGQAGKLERMEKMF 1290
NSITYCSLVS+YS G + K+ SI+R VENSDV+LDTPFFNCIIS YGQAG L++M ++F
Sbjct: 370 NSITYCSLVSAYSKVGCIDKVDSIMRHVENSDVVLDTPFFNCIISAYGQAGNLKKMGELF 429
Query: 1291 VEMKQRKCSPDNITFATMIKAYNAQGMIEAVKELEISMLDRKEDSVSRLIG 1443
+ M++RKC PDNITFA MI++YN QGM EAV+ LE M+ K ++LIG
Sbjct: 430 LAMRERKCEPDNITFACMIQSYNTQGMTEAVQNLENMMISAKSSLGTKLIG 480
Score = 133 bits (334), Expect = 1e-28
Identities = 74/290 (25%), Positives = 146/290 (50%)
Frame = +1
Query: 367 QPKCQTYTQLFVMLGKCKQPAHAKLLFEKMLLEGLKPSIDVYTSLVSVFGHSGKFNEAFI 546
+P TY+ L K ++ + + +M G+K + Y S++ +G + F +
Sbjct: 192 EPDVYTYSILIRCCAKFRRFDLIEHVLAEMSYLGIKCNCVTYNSIIDGYGKASMFEQMDD 251
Query: 547 IVDEMKSVTDCKPDAYTYSVLINCCSKYRRFDLIERALGEMSYQGIKFGIVAYNTIIDGY 726
+++M + PD +T + + + D +E+ E GIK I +NT+I Y
Sbjct: 252 ALNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKMEKWYDEFQLMGIKPDITTFNTMIKSY 311
Query: 727 GKAEMFELMENSLTDMIENESRPDVYTLNSFLWAYGNVGRIKEMERWYDEFQIMGIQPDI 906
GKA M+E M+ + M + P + T N+ + +G G I++M++ + + + +G++P+
Sbjct: 312 GKAGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEVFGKAGEIEKMDQHFLKMKHLGVKPNS 371
Query: 907 KTFNILIRSYGKAGMHDKLETVMDFMKKRFFSPTTVTFNIIIEMFGRAGNIDKMEYYFRM 1086
T+ L+ +Y K G DK++++M ++ T FN II +G+AGN+ KM F
Sbjct: 372 ITYCSLVSAYSKVGCIDKVDSIMRHVENSDVVLDTPFFNCIISAYGQAGNLKKMGELFLA 431
Query: 1087 MKYRGIKPNSITYCSLVSSYSNAGELKKISSILRQVENSDVILDTPFFNC 1236
M+ R +P++IT+ ++ SY+ G + + ++ + ++ L T C
Sbjct: 432 MRERKCEPDNITFACMIQSYNTQGMTEAVQNLENMMISAKSSLGTKLIGC 481
>ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543051|gb|EEF44586.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 486
Score = 574 bits (1480), Expect = e-161
Identities = 276/422 (65%), Positives = 347/422 (82%), Gaps = 1/422 (0%)
Frame = +1
Query: 163 PQKESKKTLSRILRTEFAVKGIERKAISAKSTTLWPKSVLEALDEAINSNQWESALKIFE 342
P++ +KK LSR LRT+ A+K IE+KA S+K LWPK+VLEALD+AI +W+SALKIFE
Sbjct: 57 PKRHTKKELSRFLRTDAAIKAIEQKADSSKYNRLWPKAVLEALDDAIKERRWKSALKIFE 116
Query: 343 LLRKQQWYQPKCQTYTQLFVMLGKCKQPAHAKLLFEKMLLEGLKPSIDVYTSLVSVFGHS 522
LLRKQ WY+P+CQTYT+L +MLGKC+QP A+LLFE M EGL+P+IDVYT+LVS +G S
Sbjct: 117 LLRKQHWYEPRCQTYTKLLMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGES 176
Query: 523 GKFNEAFIIVDEMKSVTDCKPDAYTYSVLINCCSKYRRFDLIERALGEMSYQGIKFGIVA 702
G +AF VDEMKSV+DCKPD YTYSVLIN C+K RFDLI R L EMSY G++ V
Sbjct: 177 GLLAKAFSTVDEMKSVSDCKPDVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVT 236
Query: 703 YNTIIDGYGKAEMFELMENSLTDMIE-NESRPDVYTLNSFLWAYGNVGRIKEMERWYDEF 879
+NTII+GYGKA+MF MENSLT+MIE S PD++T NS + AYGN GRI++ME+WY+EF
Sbjct: 237 FNTIINGYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEF 296
Query: 880 QIMGIQPDIKTFNILIRSYGKAGMHDKLETVMDFMKKRFFSPTTVTFNIIIEMFGRAGNI 1059
Q+MGI PDIKTFNILI+SYGKAGM++K+ +V++FMKKRFF PT VT+NIIIE FGRAG+I
Sbjct: 297 QLMGISPDIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDI 356
Query: 1060 DKMEYYFRMMKYRGIKPNSITYCSLVSSYSNAGELKKISSILRQVENSDVILDTPFFNCI 1239
+ M+ YF+ MK+ G+KPN+ITYCSLVS+YS AG L K++SILRQVENSDV+LDT FFNCI
Sbjct: 357 ENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCI 416
Query: 1240 ISVYGQAGKLERMEKMFVEMKQRKCSPDNITFATMIKAYNAQGMIEAVKELEISMLDRKE 1419
I+ YGQAG +++M ++F+EM++R+C PDN+TFATMI+AY QGM EA + LE ML K
Sbjct: 417 INAYGQAGDVDKMAELFLEMRERECMPDNVTFATMIQAYRGQGMTEAAQALEKMMLAAKG 476
Query: 1420 DS 1425
+S
Sbjct: 477 NS 478