BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00014331
         (1005 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21412.3| unnamed protein product [Vitis vinifera]              280   5e-73
ref|XP_002277947.2| PREDICTED: DNA polymerase alpha catalytic su...   274   3e-71
ref|XP_004169620.1| PREDICTED: DNA polymerase alpha catalytic su...   255   1e-65
ref|XP_004149697.1| PREDICTED: DNA polymerase alpha catalytic su...   255   1e-65
gb|AFD98849.1| DNA polymerase alpha catalytic subunit [Solanum l...   242   1e-61

>emb|CBI21412.3| unnamed protein product [Vitis vinifera]
          Length = 1561

 Score =  280 bits (715), Expect = 5e-73
 Identities = 166/359 (46%), Positives = 220/359 (61%), Gaps = 25/359 (6%)
 Frame = -3

Query: 1003 GVQIKVDAPIYDTVGEEDYEALVAKRRDDFNAFIVDDDGLGYRDEGQEEDWSQAGLXXXX 824
            G QIKV+ PIYDTV E++Y+ LVAKRR++F  FIVDD+G GY DEGQEEDWS AG+    
Sbjct: 43   GFQIKVEDPIYDTVDEDEYDKLVAKRREEFRGFIVDDNGSGYGDEGQEEDWSLAGVPPSS 102

Query: 823  XXXXXXXXXXXXXXXXXXXXXXXXXXPLVAAAA--GNQRISSMFTSSVFRRNRDETTKGI 650
                                      PL AAAA  G QR+SSMFTSSVF+++RD+  KG+
Sbjct: 103  DESDGEAERPKKKKTEKKDPPPKKPSPLSAAAAMMGKQRLSSMFTSSVFKKSRDDKVKGL 162

Query: 649  STDSILDEVLAEIVP-------RRRGDSGSL-------PATTSENQPSSNGNGDSVVEPE 512
            S DSI+D+V+AE  P       RRRG SG +       P TT + + S        + PE
Sbjct: 163  SCDSIVDDVIAEFAPDEADRERRRRGQSGLVSGGRNFVPGTTIKMEISPIS-----IRPE 217

Query: 511  MDMAGNSLPQIDIQESNDLGSTKDMLMNWNDDADSDQLPKPHDSSTN-GSVDEM------ 353
                     ++ I + + +  TKD   + N   D++ + + HD  T   +V+E       
Sbjct: 218  PT-------KVTIADGDSVSKTKDG-KDLNSKMDAESIVQSHDPLTKVDAVEETVPDAVE 269

Query: 352  -KVEPGAKKEDVVSLNAKLKGEADPALSA-TAGWKALRNGDTGDAVFDRKETNSSISSEE 179
             K E   K+++V SLNAK+K E D  LSA TAGW+A+RNG    A ++ +  N S++ EE
Sbjct: 270  DKSEQAVKRKEVHSLNAKIKEEKDLTLSAATAGWQAVRNGGNPSAGYEGEVVNPSLNCEE 329

Query: 178  KDEFLLDSDGSLPFYIIDAYEEFYGNNLGTVYLFGKVKAGHSFHSCCVVVRNMQRCIYA 2
            K +FLLDSDGSLPFYI+DA+EEFYG N+G +YLFGKVKAG ++HSCCVVV+NM+RC+YA
Sbjct: 330  KADFLLDSDGSLPFYILDAHEEFYGANMGNLYLFGKVKAGSAYHSCCVVVKNMERCVYA 388


>ref|XP_002277947.2| PREDICTED: DNA polymerase alpha catalytic subunit-like [Vitis
            vinifera]
          Length = 1522

 Score =  274 bits (700), Expect = 3e-71
 Identities = 162/354 (45%), Positives = 212/354 (59%), Gaps = 20/354 (5%)
 Frame = -3

Query: 1003 GVQIKVDAPIYDTVGEEDYEALVAKRRDDFNAFIVDDDGLGYRDEGQEEDWSQAGLXXXX 824
            G QIKV+ PIYDTV E++Y+ LVAKRR++F  FIVDD+G GY DEGQEEDWS AG+    
Sbjct: 43   GFQIKVEDPIYDTVDEDEYDKLVAKRREEFRGFIVDDNGSGYGDEGQEEDWSLAGVPPSS 102

Query: 823  XXXXXXXXXXXXXXXXXXXXXXXXXXPLVAAAA--GNQRISSMFTSSVFRRNRDETTKGI 650
                                      PL AAAA  G QR+SSMFTSSVF+++RD+  KG+
Sbjct: 103  DESDGEAERPKKKKTEKKDPPPKKPSPLSAAAAMMGKQRLSSMFTSSVFKKSRDDKVKGL 162

Query: 649  STDSILDEVLAEIVP-------RRRGDSGSL-------PATTSENQPSS---NGNGDSVV 521
            S DSI+D+V+AE  P       RRRG SG +       P TT + + S          V 
Sbjct: 163  SCDSIVDDVIAEFAPDEADRERRRRGQSGLVSGGRNFVPGTTIKMEISPISIRPEPTKVT 222

Query: 520  EPEMDMAGNSLPQIDIQESNDLGSTKDMLMNWNDDADSDQLPKPHDSSTNGSVDEMKVEP 341
              + D   +S+   ++ E   +        + N DA  + +P            E K E 
Sbjct: 223  IADGDSVSSSMQNGNMVEGKGVVKESKDANDLNCDAVEETVP---------DAVEDKSEQ 273

Query: 340  GAKKEDVVSLNAKLKGEADPALSA-TAGWKALRNGDTGDAVFDRKETNSSISSEEKDEFL 164
              K+++V SLNAK+K E D  LSA TAGW+A+RNG    A ++ +  N S++ EEK +FL
Sbjct: 274  AVKRKEVHSLNAKIKEEKDLTLSAATAGWQAVRNGGNPSAGYEGEVVNPSLNCEEKADFL 333

Query: 163  LDSDGSLPFYIIDAYEEFYGNNLGTVYLFGKVKAGHSFHSCCVVVRNMQRCIYA 2
            LDSDGSLPFYI+DA+EEFYG N+G +YLFGKVKAG ++HSCCVVV+NM+RC+YA
Sbjct: 334  LDSDGSLPFYILDAHEEFYGANMGNLYLFGKVKAGSAYHSCCVVVKNMERCVYA 387


>ref|XP_004169620.1| PREDICTED: DNA polymerase alpha catalytic subunit-like, partial
            [Cucumis sativus]
          Length = 498

 Score =  255 bits (652), Expect = 1e-65
 Identities = 159/377 (42%), Positives = 213/377 (56%), Gaps = 43/377 (11%)
 Frame = -3

Query: 1003 GVQIKVDAPIYDTVGEEDYEALVAKRRDDFNAFIVDDDGLGYRDEGQEEDWSQAGLXXXX 824
            G Q+K++ PIYDT+ E++Y+ALVAKRR++   FIVDDDGLGY DEG+EEDWS+AG+    
Sbjct: 43   GFQVKLENPIYDTIPEDEYDALVAKRREEVRGFIVDDDGLGYGDEGEEEDWSKAGVCFSD 102

Query: 823  XXXXXXXXXXXXXXXXXXXXXXXXXXPLVAAAA---GNQRISSMFTSSVFRR-NRDETTK 656
                                        + AAA   G Q++SSMFTSS+FR+  RD+  K
Sbjct: 103  ESDGELDKPKKRKVVKKETQPKKPSSSSLTAAAAMMGKQKLSSMFTSSIFRKTGRDDKAK 162

Query: 655  GISTDSILDEVLAEIVP-------RRRGDSG---------SLPATTSEN----------- 557
            G+  DSI+D+V+AE  P       RR+G  G         S+PA  SE            
Sbjct: 163  GLGCDSIVDDVIAEFAPDETDRERRRKGQIGAIPILRTVTSVPAVKSEGFTARGLNLTGE 222

Query: 556  ----QPSSNGNGDS---VVEPEMDMAGNSLPQIDIQESNDLGSTKDMLMNWNDDADSDQL 398
                + + NGN ++   V   +++     +      E+ +  S KD+    N D   +QL
Sbjct: 223  SDFIKDAENGNSETTRVVTNSDLESVRGGVEVQGNGETKEFDS-KDLNSQINLD-PVEQL 280

Query: 397  P-----KPHDSSTNGSVDEMKVEPGAKKEDVVSLNAKLKGEADPALSATAGWKALRNGDT 233
            P     +     T     E K EP  KKE V +LNAK+  E DPALSATA W+A+R+  +
Sbjct: 281  PNSLIKEDVSGDTMPIKVETKAEPLVKKEPVSTLNAKISNERDPALSATAEWQAVRSEGS 340

Query: 232  GDAVFDRKETNSSISSEEKDEFLLDSDGSLPFYIIDAYEEFYGNNLGTVYLFGKVKAGHS 53
            G         +++  +EEK EF  D+DGSLPFYI+DA+EE +G N+GTVYLFGKVKAG +
Sbjct: 341  GSV------NSAAEMAEEKSEFDTDTDGSLPFYIVDAHEELFGANMGTVYLFGKVKAGDT 394

Query: 52   FHSCCVVVRNMQRCIYA 2
            FHSCCVVV+NMQRCIYA
Sbjct: 395  FHSCCVVVKNMQRCIYA 411


>ref|XP_004149697.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Cucumis
            sativus]
          Length = 1547

 Score =  255 bits (652), Expect = 1e-65
 Identities = 159/377 (42%), Positives = 213/377 (56%), Gaps = 43/377 (11%)
 Frame = -3

Query: 1003 GVQIKVDAPIYDTVGEEDYEALVAKRRDDFNAFIVDDDGLGYRDEGQEEDWSQAGLXXXX 824
            G Q+K++ PIYDT+ E++Y+ALVAKRR++   FIVDDDGLGY DEG+EEDWS+AG+    
Sbjct: 43   GFQVKLENPIYDTIPEDEYDALVAKRREEVRGFIVDDDGLGYGDEGEEEDWSKAGVCFSD 102

Query: 823  XXXXXXXXXXXXXXXXXXXXXXXXXXPLVAAAA---GNQRISSMFTSSVFRR-NRDETTK 656
                                        + AAA   G Q++SSMFTSS+FR+  RD+  K
Sbjct: 103  ESDGELDKPKKRKVVKKETQPKKPSSSSLTAAAAMMGKQKLSSMFTSSIFRKTGRDDKAK 162

Query: 655  GISTDSILDEVLAEIVP-------RRRGDSG---------SLPATTSEN----------- 557
            G+  DSI+D+V+AE  P       RR+G  G         S+PA  SE            
Sbjct: 163  GLGCDSIVDDVIAEFAPDETDRERRRKGQIGAIPILRTVTSVPAVKSEGFTARGLNLTGE 222

Query: 556  ----QPSSNGNGDS---VVEPEMDMAGNSLPQIDIQESNDLGSTKDMLMNWNDDADSDQL 398
                + + NGN ++   V   +++     +      E+ +  S KD+    N D   +QL
Sbjct: 223  SDFIKDAENGNSETTRVVTNSDLESVRGGVEVQGNGETKEFDS-KDLNSQINLD-PVEQL 280

Query: 397  P-----KPHDSSTNGSVDEMKVEPGAKKEDVVSLNAKLKGEADPALSATAGWKALRNGDT 233
            P     +     T     E K EP  KKE V +LNAK+  E DPALSATA W+A+R+  +
Sbjct: 281  PNSLIKEDVSGDTMPIKVETKAEPLVKKEPVSTLNAKISNERDPALSATAEWQAVRSEGS 340

Query: 232  GDAVFDRKETNSSISSEEKDEFLLDSDGSLPFYIIDAYEEFYGNNLGTVYLFGKVKAGHS 53
            G         +++  +EEK EF  D+DGSLPFYI+DA+EE +G N+GTVYLFGKVKAG +
Sbjct: 341  GSV------NSAAEMAEEKSEFDTDTDGSLPFYIVDAHEELFGANMGTVYLFGKVKAGDT 394

Query: 52   FHSCCVVVRNMQRCIYA 2
            FHSCCVVV+NMQRCIYA
Sbjct: 395  FHSCCVVVKNMQRCIYA 411


>gb|AFD98849.1| DNA polymerase alpha catalytic subunit [Solanum lycopersicum]
          Length = 1561

 Score =  242 bits (617), Expect = 1e-61
 Identities = 156/383 (40%), Positives = 208/383 (54%), Gaps = 49/383 (12%)
 Frame = -3

Query: 1003 GVQIKVDAPIYDTVGEEDYEALVAKRRDDFNAFIVDDDGLGYRDEGQEEDWSQAGLXXXX 824
            G+Q+K+D PIYD V +++Y  +VAKRR+    FIVDDDGLGY DEGQEEDWS AG+    
Sbjct: 45   GLQVKIDEPIYDVVEDDEYNDIVAKRREAARGFIVDDDGLGYGDEGQEEDWSVAGVLSSE 104

Query: 823  XXXXXXXXXXXXXXXXXXXXXXXXXXP--LVAAAA--GNQRISSMFTSSVFRRNRDETTK 656
                                         L AAAA  G QRISS+FTSSVF+R  D+ T+
Sbjct: 105  GSEDENERPKNKKKTSEKKQQITKKPSAALTAAAALMGKQRISSLFTSSVFKR--DDKTR 162

Query: 655  GISTDSILDEVLAEIVP-------RRRGDSGSLPATTS---------------------- 563
             +S DSI+D+V+AE  P       RRRG+S SL A+ S                      
Sbjct: 163  NLSCDSIVDDVIAEFAPDEADRERRRRGNSNSLQASRSSVANPNLLNVKTEKLGAGKVDL 222

Query: 562  ------ENQPSSNGNGDSVVEPEM--DMAGNSLPQIDIQESNDLGSTKDMLMNWNDDADS 407
                  +   + NG   S   PE+  D     L +I   E N+           + + + 
Sbjct: 223  MTRQEVKRVTAQNGESISGGLPEISTDEGTGGLLKISTGEGNNSARNIQSSEVLDAEVEG 282

Query: 406  DQLPKPHDSSTNGSVD--------EMKVEPGAKKEDVVSLNAKLKGEADPALSATAGWKA 251
            ++  K  + ST G  D        E+K+EP  + + V +LNAK+    DP LSATA W+A
Sbjct: 283  EKAVKSDNLSTVGIRDGDTVVNCAEVKLEPLVESK-VFALNAKISEGKDPGLSATAEWQA 341

Query: 250  LRNGDTGDAVFDRKETNSSISSEEKDEFLLDSDGSLPFYIIDAYEEFYGNNLGTVYLFGK 71
            LRN  +G    +  E    +++EEK +F LDSDGSLPF+I+DA+EE YG N G +YLFGK
Sbjct: 342  LRNAGSGILNCNESEAKL-VNTEEKTDFELDSDGSLPFFILDAHEELYGTNAGNIYLFGK 400

Query: 70   VKAGHSFHSCCVVVRNMQRCIYA 2
            VKAG ++HSCC+VV+NMQRC+YA
Sbjct: 401  VKAGGTYHSCCIVVKNMQRCVYA 423