BLASTX nr result

ID: Cimicifuga21_contig00014214 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00014214
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516804.1| conserved hypothetical protein [Ricinus comm...    58   9e-07
ref|XP_003546120.1| PREDICTED: F-box/kelch-repeat protein At3g23...    57   2e-06
gb|ACU22680.1| unknown [Glycine max]                                   57   2e-06
ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06
ref|XP_003546119.1| PREDICTED: F-box/kelch-repeat protein At3g23...    56   3e-06

>ref|XP_002516804.1| conserved hypothetical protein [Ricinus communis]
           gi|223543892|gb|EEF45418.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 316

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
 Frame = +3

Query: 9   IGELGGLLCVVSGRTGQDIWIWVMKDYGVAESWIIQFRIGYSRISGS--FAYMEPLGLTS 182
           +G L G LCV+          WVMK+YGV ESWI    + Y    GS    Y  P  +  
Sbjct: 207 LGVLDGCLCVMCNYHAVRADFWVMKEYGVRESWIRLVTVPYLDYPGSLHLQYSVPYAIAD 266

Query: 183 NGEIIVQKIGSELILYLP-----KTNIILNLKKFERAFLEPFSYIGSLVSPRV 326
           NGE++++   S L++Y P     K  +I N      ++++   YI SLVSP+V
Sbjct: 267 NGEVLLE-FKSSLVIYNPNYGTFKYPVINN----SCSWVDAEVYIDSLVSPKV 314


>ref|XP_003546120.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max]
          Length = 393

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
 Frame = +3

Query: 9   IGELGGLLCVVSGRTGQDIWIWVMKDYGVAESWIIQFRIGYSRISGSFAYMEPLGLTSNG 188
           +G L   LCV+S      + +W+MKDYG  ESW   FR+ Y  IS S+ Y + L ++ + 
Sbjct: 289 LGVLRDCLCVLS-HADTFLDVWLMKDYGNKESWTKLFRVPYMGISDSYLYTKALCISEDD 347

Query: 189 EIIVQKIGSELILYLPK--TNIILNLKKFERAFLEPFSYIGSLVSPRV 326
           +++++   SEL +Y  +  T+ I +++     ++ P  YI SL+SP V
Sbjct: 348 QVLME-FNSELAVYNSRNGTSKIPDIQDI-YMYMTPEVYIESLISPCV 393


>gb|ACU22680.1| unknown [Glycine max]
          Length = 393

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
 Frame = +3

Query: 9   IGELGGLLCVVSGRTGQDIWIWVMKDYGVAESWIIQFRIGYSRISGSFAYMEPLGLTSNG 188
           +G L   LCV+S      + +W+MKDYG  ESW   FR+ Y  IS S+ Y + L ++ + 
Sbjct: 289 LGVLRDCLCVLS-HADTFLDVWLMKDYGNKESWTKLFRVPYMGISDSYLYTKALCISEDD 347

Query: 189 EIIVQKIGSELILYLPK--TNIILNLKKFERAFLEPFSYIGSLVSPRV 326
           +++++   SEL +Y  +  T+ I +++     ++ P  YI SL+SP V
Sbjct: 348 QVLME-FNSELAVYNSRNGTSKIPDIQDI-YMYMTPEVYIESLISPCV 393


>ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|222833916|gb|EEE72393.1|
           predicted protein [Populus trichocarpa]
          Length = 477

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
 Frame = +3

Query: 9   IGELGGLLCVVSGRTGQDIWIWVMKDYGVAESWIIQF--RIGYSRISGSFAYMEPLGLTS 182
           +G LGG L       G    IWVMK YGV ESW  +F  +   + I   +    P+ L S
Sbjct: 281 LGVLGGCLYFFDYPLGDSFDIWVMKQYGVQESWTKEFILKNPSTDIIWYWDLYRPISLLS 340

Query: 183 NGEIIVQKIGSELILYLPKTNIILNLKKFERAFLEPFSYIGSLVSPRVI 329
           NGEI++      ++ Y P+      LK +     E   Y+ S +SPR I
Sbjct: 341 NGEILMSHKSKAMVSYNPEDRSFRFLKIYGIQNFEANPYVPSFLSPREI 389


>ref|XP_003546119.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max]
          Length = 405

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
 Frame = +3

Query: 9   IGELGGLLCVVSGRTGQDIWIWVMKDYGVAESWIIQFRIGYSRISGSFAYMEPLGLTSNG 188
           +G L G LC+          +W+MKDYG  ESW+    I Y     +F+Y  P  ++ NG
Sbjct: 299 LGVLQGCLCMNYDYKKTHFVVWMMKDYGARESWVKLVSIPYVPNPENFSYSGPYYISENG 358

Query: 189 EIIVQKIGSELILYLPKTNIILNLK-KFERAFLEPFSYIGSLVSP 320
           E+++     +LILY P+ N     K +  + + +   Y+ +LVSP
Sbjct: 359 EVLLM-FEFDLILYNPRDNSFKYPKIESGKGWFDAEVYVETLVSP 402


Top