BLASTX nr result

ID: Cimicifuga21_contig00013944 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00013944
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002883974.1| RPS15AB [Arabidopsis lyrata subsp. lyrata] g...    61   8e-08
ref|NP_179562.1| 40S ribosomal protein S15a-2 [Arabidopsis thali...    61   8e-08
ref|NP_194672.1| 40S ribosomal protein S15a-5 [Arabidopsis thali...    61   1e-07
ref|XP_004140873.1| PREDICTED: 40S ribosomal protein S15a-5-like...    59   3e-07
ref|NP_001046462.1| Os02g0255200 [Oryza sativa Japonica Group] g...    59   3e-07

>ref|XP_002883974.1| RPS15AB [Arabidopsis lyrata subsp. lyrata]
           gi|297329814|gb|EFH60233.1| RPS15AB [Arabidopsis lyrata
           subsp. lyrata]
          Length = 129

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 29/41 (70%), Positives = 36/41 (87%)
 Frame = +3

Query: 129 MGRRILNEALSKIVNAERRGKATTDLQPASNVMAAFLKIMK 251
           MGRRILN+AL  IVNAE+RGKA+ +L+P S VM++FLKIMK
Sbjct: 1   MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMK 41


>ref|NP_179562.1| 40S ribosomal protein S15a-2 [Arabidopsis thaliana]
           gi|75279062|sp|O82205.1|R15A2_ARATH RecName: Full=40S
           ribosomal protein S15a-2 gi|3687245|gb|AAC62143.1| 40S
           ribosomal protein S15A [Arabidopsis thaliana]
           gi|48310079|gb|AAT41749.1| At2g19720 [Arabidopsis
           thaliana] gi|50198839|gb|AAT70450.1| At2g19720
           [Arabidopsis thaliana] gi|330251823|gb|AEC06917.1| 40S
           ribosomal protein S15a-2 [Arabidopsis thaliana]
          Length = 129

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 29/41 (70%), Positives = 36/41 (87%)
 Frame = +3

Query: 129 MGRRILNEALSKIVNAERRGKATTDLQPASNVMAAFLKIMK 251
           MGRRILN+AL  IVNAE+RGKA+ +L+P S VM++FLKIMK
Sbjct: 1   MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMK 41


>ref|NP_194672.1| 40S ribosomal protein S15a-5 [Arabidopsis thaliana]
           gi|297803094|ref|XP_002869431.1| RPS15AE [Arabidopsis
           lyrata subsp. lyrata]
           gi|75311751|sp|Q9M0E0.1|R15A5_ARATH RecName: Full=40S
           ribosomal protein S15a-5 gi|7269842|emb|CAB79701.1|
           ribosomal protein S15a homolog [Arabidopsis thaliana]
           gi|21553914|gb|AAM62997.1| ribosomal protein S15a
           homolog [Arabidopsis thaliana]
           gi|110737866|dbj|BAF00871.1| ribosomal protein S15a
           homolog [Arabidopsis thaliana]
           gi|111074474|gb|ABH04610.1| At4g29430 [Arabidopsis
           thaliana] gi|297315267|gb|EFH45690.1| RPS15AE
           [Arabidopsis lyrata subsp. lyrata]
           gi|332660230|gb|AEE85630.1| 40S ribosomal protein S15a-5
           [Arabidopsis thaliana]
          Length = 129

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/41 (70%), Positives = 36/41 (87%)
 Frame = +3

Query: 129 MGRRILNEALSKIVNAERRGKATTDLQPASNVMAAFLKIMK 251
           MGRRILN+AL  IVNAERRGKA+ +L+P S VM++FL+IMK
Sbjct: 1   MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMK 41


>ref|XP_004140873.1| PREDICTED: 40S ribosomal protein S15a-5-like [Cucumis sativus]
          Length = 129

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 28/41 (68%), Positives = 34/41 (82%)
 Frame = +3

Query: 129 MGRRILNEALSKIVNAERRGKATTDLQPASNVMAAFLKIMK 251
           MGRRILN+AL  IVNAERRG +  +L+P S VMA+FLK+MK
Sbjct: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMK 41


>ref|NP_001046462.1| Os02g0255200 [Oryza sativa Japonica Group]
           gi|50251667|dbj|BAD29691.1| putative 40S ribosomal
           protein S15A [Oryza sativa Japonica Group]
           gi|113535993|dbj|BAF08376.1| Os02g0255200 [Oryza sativa
           Japonica Group] gi|125538846|gb|EAY85241.1| hypothetical
           protein OsI_06614 [Oryza sativa Indica Group]
           gi|125581523|gb|EAZ22454.1| hypothetical protein
           OsJ_06122 [Oryza sativa Japonica Group]
           gi|215768335|dbj|BAH00564.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 129

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/41 (73%), Positives = 33/41 (80%)
 Frame = +3

Query: 129 MGRRILNEALSKIVNAERRGKATTDLQPASNVMAAFLKIMK 251
           MGRRILN+AL  +VNAERRGKAT  LQP S VM +FL IMK
Sbjct: 1   MGRRILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMK 41


Top