BLASTX nr result

ID: Cimicifuga21_contig00013894 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00013894
         (1237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003598372.1| F-box/kelch-repeat protein [Medicago truncat...    57   1e-05

>ref|XP_003598372.1| F-box/kelch-repeat protein [Medicago truncatula]
           gi|355487420|gb|AES68623.1| F-box/kelch-repeat protein
           [Medicago truncatula]
          Length = 385

 Score = 57.0 bits (136), Expect = 1e-05
 Identities = 66/288 (22%), Positives = 125/288 (43%), Gaps = 12/288 (4%)
 Frame = +3

Query: 51  SLVSSCNGLFLIDIWSPSTYTMIVYNPVTRHFKTLPQLPESECYGACTLV--------HD 206
           S+  SC+G+FL  ++S ++Y   ++NP  R FK LP L   +     T++        +D
Sbjct: 130 SVKCSCDGIFL-GMFSHTSY--FLWNPSIRKFKLLPPLENQDKSAPFTIIVPYTISFGYD 186

Query: 207 VSIDKHKVFVTNKKNQWWVLTLGGE-WRQLKSFTTPNCCTDCSSPFLFVEKEVHCVINSR 383
             IDK+KV   + KN+ ++ TLG + W+++     P  CT C S  L+V   V+  ++  
Sbjct: 187 CFIDKYKVIAVSSKNEVFLYTLGTDYWKRIDDI--PYYCTICRSG-LYVSGAVNWYVHDE 243

Query: 384 DDNGINYGYGPQDYSFYVYSIHVAHEKLTTTEIPKTQEIGNPW-FSFLSEVNGSSLCL-T 557
            D+ +          +++ S+ + +E       P  ++    W    LS+     LC+  
Sbjct: 244 SDSSL----------YFILSLDLENESYQELYPPDFEDESYSWTLGVLSDY----LCVFA 289

Query: 558 SFDLFGKSIDIRILEDRDNC-VWTRFHFISLESRSFEPFFLKDLFSHQTIVFCMPYTNDC 734
           + D+F   +++ I+++  N   WT+   +             D+  H        Y ++ 
Sbjct: 290 TSDMF---LNVWIMKEYGNQESWTKLCSV------------PDMHDHGFQASAAVYISED 334

Query: 735 NDLLDLVKIVVHHEDQLFLYDLKNQDMKHIGFLNMQTELLSLSYVLTL 878
           + LL         E++L +YD K      + F N    +    Y+ +L
Sbjct: 335 DQLLLQCYEFDSGEEKLVVYDSKTGIFNILEFQNNYEHISQKVYIESL 382


Top