BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00013890
         (278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271967.1| PREDICTED: nuclear pore complex protein Nup9...    76   3e-12
gb|AAF14656.1|AC011713_4 Identical to gi|1297187 nucleoprotein 9...    66   3e-09
ref|NP_178183.2| suppressor of auxin resistance 3 [Arabidopsis t...    66   3e-09
ref|XP_002889279.1| hypothetical protein ARALYDRAFT_895920 [Arab...    66   3e-09
gb|AAN03675.1|AF411838_1 putative nucleoporin PRECOZ [Arabidopsi...    65   4e-09

>ref|XP_002271967.1| PREDICTED: nuclear pore complex protein Nup98-Nup96 [Vitis
           vinifera]
          Length = 1041

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 42/93 (45%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
 Frame = +1

Query: 4   ITEVDDEDLVHPAKADLSHSLPGHLKLDPIKMQEMRMLM--XXXXXXXXXXXXXXXXKQS 177
           ++++D+  LV P  A LSHSLP HL LDPIKM+EMRM+M                  +QS
Sbjct: 216 VSDIDEATLVEPNGAVLSHSLPAHLGLDPIKMKEMRMVMFPVDEEEDHDFSGEFKQREQS 275

Query: 178 FGKEPSRSPLQYPVLKTSHKNSPPAVRRTPLAL 276
           F KE  R PL Y   + SHK+     R+TPLAL
Sbjct: 276 FNKEYIRPPLHYSARRMSHKSGSSVARKTPLAL 308


>gb|AAF14656.1|AC011713_4 Identical to gi|1297187 nucleoprotein 98 homolog from Arabidopsis
           thaliana cosmid gb|U53501. EST gb|W43800 comes from this
           gene [Arabidopsis thaliana] gi|1297187|gb|AAA98914.1|
           Theoretical protein with similarity to protein encoded
           by GenBank Accession Number U41815, nucleoporin 98
           [Arabidopsis thaliana]
          Length = 850

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
 Frame = +1

Query: 4   ITEVDDEDLVHPAKADLSHSLPGHLKLDPIKMQEMRMLMXXXXXXXXXXXXXXXXKQSFG 183
           + ++D+ED +  ++ +LSHSLP HL LDP KM+EMRMLM                     
Sbjct: 212 VADIDEEDQMETSELELSHSLPAHLGLDPEKMKEMRMLMFPNEDEDESEDFREQTSHLMT 271

Query: 184 KEPSRS--PLQYPVLKTSHKNSPPAVRRTPLAL 276
               R+  P Q    + SH++ PP VR+TPLAL
Sbjct: 272 SLTKRNVRPSQKIAQRNSHQDPPPVVRKTPLAL 304


>ref|NP_178183.2| suppressor of auxin resistance 3 [Arabidopsis thaliana]
           gi|22652299|gb|AAN03676.1|AF411839_1 putative
           nucleoporin PRECOZ [Arabidopsis thaliana]
           gi|61353788|gb|AAX44044.1| putative nucleoporin 96
           [Arabidopsis thaliana] gi|332198315|gb|AEE36436.1|
           suppressor of auxin resistance 3 [Arabidopsis thaliana]
          Length = 1046

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
 Frame = +1

Query: 4   ITEVDDEDLVHPAKADLSHSLPGHLKLDPIKMQEMRMLMXXXXXXXXXXXXXXXXKQSFG 183
           + ++D+ED +  ++ +LSHSLP HL LDP KM+EMRMLM                     
Sbjct: 219 VADIDEEDQMETSELELSHSLPAHLGLDPEKMKEMRMLMFPNEDEDESEDFREQTSHLMT 278

Query: 184 KEPSRS--PLQYPVLKTSHKNSPPAVRRTPLAL 276
               R+  P Q    + SH++ PP VR+TPLAL
Sbjct: 279 SLTKRNVRPSQKIAQRNSHQDPPPVVRKTPLAL 311


>ref|XP_002889279.1| hypothetical protein ARALYDRAFT_895920 [Arabidopsis lyrata subsp.
           lyrata] gi|297335120|gb|EFH65538.1| hypothetical protein
           ARALYDRAFT_895920 [Arabidopsis lyrata subsp. lyrata]
          Length = 1045

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
 Frame = +1

Query: 4   ITEVDDEDLVHPAKADLSHSLPGHLKLDPIKMQEMRMLMXXXXXXXXXXXXXXXXKQSFG 183
           + ++D+ED +  ++ +LSHSLP HL LDP KM+EMRMLM                  +  
Sbjct: 219 VADIDEEDQMETSELELSHSLPAHLGLDPGKMKEMRMLMFPHEDVDESEDFREQTSHNMT 278

Query: 184 KEPSRS--PLQYPVLKTSHKNSPPAVRRTPLAL 276
               R+  P Q    + SH++ PP VR+TPLAL
Sbjct: 279 SLTKRNVRPSQKISQRNSHQDPPPVVRKTPLAL 311


>gb|AAN03675.1|AF411838_1 putative nucleoporin PRECOZ [Arabidopsis thaliana]
          Length = 1046

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
 Frame = +1

Query: 4   ITEVDDEDLVHPAKADLSHSLPGHLKLDPIKMQEMRMLMXXXXXXXXXXXXXXXXKQSFG 183
           + ++D+ED +  ++ +LSHSLP HL LDP KM+EMRMLM                     
Sbjct: 219 VADIDEEDQMETSELELSHSLPAHLGLDPEKMKEMRMLMFPNEDEDESEDFREQTSHLMT 278

Query: 184 KEPSRS--PLQYPVLKTSHKNSPPAVRRTPLAL 276
               R+  P Q    + SH++ PP VR+TPLAL
Sbjct: 279 ALTKRNVRPSQKIAQRNSHQDPPPVVRKTPLAL 311