BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00013824
         (856 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278113.1| PREDICTED: structural maintenance of chromos...   300   4e-79
ref|XP_002303494.1| predicted protein [Populus trichocarpa] gi|2...   295   1e-77
ref|XP_002510971.1| structural maintenance of chromosomes 6 smc6...   291   1e-76
ref|NP_196383.1| structural maintenance of chromosomes 6A [Arabi...   290   2e-76
gb|ACQ84165.1| truncated structural maintenance of chromosomes f...   290   2e-76

>ref|XP_002278113.1| PREDICTED: structural maintenance of chromosomes protein 6-like
           [Vitis vinifera]
          Length = 1057

 Score =  300 bits (767), Expect = 4e-79
 Identities = 157/223 (70%), Positives = 173/223 (77%), Gaps = 6/223 (2%)
 Frame = -3

Query: 653 MGDSRVLPA------RSLAGIVTKIRLENFMCHSSLQIDLGEWVNFVTGQNGSGKSAILT 492
           MGDS V         RS AGI+ KIRLENFMCHSSLQI+LGEW+NFVTGQNGSGKSAILT
Sbjct: 1   MGDSTVFTQPLSASHRSSAGIILKIRLENFMCHSSLQIELGEWLNFVTGQNGSGKSAILT 60

Query: 491 ALCVAFGCRARGTQRASTLKDFIKTGCSYANVHVEIKNQGEDAFKPEVYGDAXXXXXXXX 312
           ALCVAFG RA+ TQRA+TLK+FIKTGCSYA + VEIKN+GEDAFKPE+YGD         
Sbjct: 61  ALCVAFGSRAKETQRATTLKEFIKTGCSYAVIQVEIKNEGEDAFKPEIYGDVIIVERRIS 120

Query: 311 XXXXXXTLKDRQGRRVASRKEELHELVEHFNIDVENPCVIMSQDKSREFLHSGNXXXXXX 132
                  LKD QG+RVASRKE+LHELVEHFNIDVENPCVIMSQDKSREFLHSGN      
Sbjct: 121 VSTSSTVLKDHQGKRVASRKEDLHELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFK 180

Query: 131 XXXKATLLQQVYDLLLSINAQLNDANAQVDELESSIRPILKEL 3
              KATLLQQV DLL++I  +L+ AN  V+ELE SI PILKEL
Sbjct: 181 FFFKATLLQQVNDLLVNIGTRLDSANTLVEELEKSIEPILKEL 223


>ref|XP_002303494.1| predicted protein [Populus trichocarpa] gi|222840926|gb|EEE78473.1|
           predicted protein [Populus trichocarpa]
          Length = 1046

 Score =  295 bits (754), Expect = 1e-77
 Identities = 149/220 (67%), Positives = 174/220 (79%), Gaps = 1/220 (0%)
 Frame = -3

Query: 659 RTMGDSRVLPA-RSLAGIVTKIRLENFMCHSSLQIDLGEWVNFVTGQNGSGKSAILTALC 483
           R  GDS +    RS  G +++IRLENFMCH +LQI+L +WVNFVTG+NGSGKSAILTALC
Sbjct: 5   RVFGDSNIPTTFRSGVGTISRIRLENFMCHDNLQIELDQWVNFVTGRNGSGKSAILTALC 64

Query: 482 VAFGCRARGTQRASTLKDFIKTGCSYANVHVEIKNQGEDAFKPEVYGDAXXXXXXXXXXX 303
           +AFGCRA+GTQRA+TLKDFIKTGCSYA V VE++N+GE++FKP++YGD+           
Sbjct: 65  IAFGCRAKGTQRAATLKDFIKTGCSYAVVEVEVRNRGEESFKPDIYGDSIIIERRINQSS 124

Query: 302 XXXTLKDRQGRRVASRKEELHELVEHFNIDVENPCVIMSQDKSREFLHSGNXXXXXXXXX 123
               LKD QGR+VASR+E+L EL+EHFNIDVENPCVIMSQDKSREFLHSGN         
Sbjct: 125 STTVLKDHQGRKVASRREDLRELIEHFNIDVENPCVIMSQDKSREFLHSGNEKDKFKFFF 184

Query: 122 KATLLQQVYDLLLSINAQLNDANAQVDELESSIRPILKEL 3
           KATLLQQV DLLLSIN QL  ANA VDELE+SI+PI KEL
Sbjct: 185 KATLLQQVNDLLLSINEQLKSANALVDELEASIKPIEKEL 224


>ref|XP_002510971.1| structural maintenance of chromosomes 6 smc6, putative [Ricinus
           communis] gi|223550086|gb|EEF51573.1| structural
           maintenance of chromosomes 6 smc6, putative [Ricinus
           communis]
          Length = 1058

 Score =  291 bits (745), Expect = 1e-76
 Identities = 154/223 (69%), Positives = 172/223 (77%), Gaps = 6/223 (2%)
 Frame = -3

Query: 653 MGDSRVLP------ARSLAGIVTKIRLENFMCHSSLQIDLGEWVNFVTGQNGSGKSAILT 492
           MGDS V        +RS AG VT+IRLENFMCHS+LQI+L  WVNF+TGQNGSGKSAILT
Sbjct: 1   MGDSTVFSECNPTRSRSGAGTVTRIRLENFMCHSNLQIELCPWVNFITGQNGSGKSAILT 60

Query: 491 ALCVAFGCRARGTQRASTLKDFIKTGCSYANVHVEIKNQGEDAFKPEVYGDAXXXXXXXX 312
           ALC+AFG RA+GTQRASTLKDFIKTGCSYA V VE+KN+G++AFKPE+YGDA        
Sbjct: 61  ALCIAFGSRAKGTQRASTLKDFIKTGCSYAVVEVEVKNEGDEAFKPEIYGDAIIIERRIN 120

Query: 311 XXXXXXTLKDRQGRRVASRKEELHELVEHFNIDVENPCVIMSQDKSREFLHSGNXXXXXX 132
                  LKD QG++VASRKEEL EL+EHFNIDVENPCVIMSQDKSREFLHSGN      
Sbjct: 121 QSTSSTVLKDFQGKKVASRKEELRELIEHFNIDVENPCVIMSQDKSREFLHSGNDRDKFK 180

Query: 131 XXXKATLLQQVYDLLLSINAQLNDANAQVDELESSIRPILKEL 3
              KATLLQQV DLL SI  QL   NA VDELE++I+PI KEL
Sbjct: 181 FFFKATLLQQVNDLLQSIYEQLKSTNAFVDELEATIKPIEKEL 223


>ref|NP_196383.1| structural maintenance of chromosomes 6A [Arabidopsis thaliana]
           gi|9759587|dbj|BAB11444.1| SMC-like protein [Arabidopsis
           thaliana] gi|332003807|gb|AED91190.1| structural
           maintenance of chromosomes 6A [Arabidopsis thaliana]
          Length = 1058

 Score =  290 bits (743), Expect = 2e-76
 Identities = 143/205 (69%), Positives = 166/205 (80%)
 Frame = -3

Query: 617 AGIVTKIRLENFMCHSSLQIDLGEWVNFVTGQNGSGKSAILTALCVAFGCRARGTQRAST 438
           +G + +IRLENFMCHS+L+I+ G+WVNF+TGQNGSGKSAILTALCVAFGCRARGTQRA+T
Sbjct: 20  SGKILRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAAT 79

Query: 437 LKDFIKTGCSYANVHVEIKNQGEDAFKPEVYGDAXXXXXXXXXXXXXXTLKDRQGRRVAS 258
           LKDFIKTGCSYA V+VE+KNQGEDAFKPE+YGD                LKD QGR+++S
Sbjct: 80  LKDFIKTGCSYALVYVELKNQGEDAFKPEIYGDTLIIERRISDSTSLTVLKDHQGRKISS 139

Query: 257 RKEELHELVEHFNIDVENPCVIMSQDKSREFLHSGNXXXXXXXXXKATLLQQVYDLLLSI 78
           RKEEL ELVEH+NIDVENPCVIMSQDKSREFLHSGN         KATLLQQV D+L SI
Sbjct: 140 RKEELRELVEHYNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFYKATLLQQVDDILQSI 199

Query: 77  NAQLNDANAQVDELESSIRPILKEL 3
             +LN ANA +DE+E +I+PI KE+
Sbjct: 200 GTKLNSANALLDEMEKTIKPIEKEI 224


>gb|ACQ84165.1| truncated structural maintenance of chromosomes family protein 6A
           [Arabidopsis thaliana]
          Length = 876

 Score =  290 bits (743), Expect = 2e-76
 Identities = 143/205 (69%), Positives = 166/205 (80%)
 Frame = -3

Query: 617 AGIVTKIRLENFMCHSSLQIDLGEWVNFVTGQNGSGKSAILTALCVAFGCRARGTQRAST 438
           +G + +IRLENFMCHS+L+I+ G+WVNF+TGQNGSGKSAILTALCVAFGCRARGTQRA+T
Sbjct: 20  SGKILRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAAT 79

Query: 437 LKDFIKTGCSYANVHVEIKNQGEDAFKPEVYGDAXXXXXXXXXXXXXXTLKDRQGRRVAS 258
           LKDFIKTGCSYA V+VE+KNQGEDAFKPE+YGD                LKD QGR+++S
Sbjct: 80  LKDFIKTGCSYALVYVELKNQGEDAFKPEIYGDTLIIERRISDSTSLTVLKDHQGRKISS 139

Query: 257 RKEELHELVEHFNIDVENPCVIMSQDKSREFLHSGNXXXXXXXXXKATLLQQVYDLLLSI 78
           RKEEL ELVEH+NIDVENPCVIMSQDKSREFLHSGN         KATLLQQV D+L SI
Sbjct: 140 RKEELRELVEHYNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFYKATLLQQVDDILQSI 199

Query: 77  NAQLNDANAQVDELESSIRPILKEL 3
             +LN ANA +DE+E +I+PI KE+
Sbjct: 200 GTKLNSANALLDEMEKTIKPIEKEI 224