BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00013820
         (666 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-...    89   6e-16
ref|XP_002306264.1| chromatin remodeling complex subunit [Populu...    83   4e-14
ref|NP_201200.2| protein chromatin remodeling 24 [Arabidopsis th...    82   7e-14
dbj|BAA96898.1| unnamed protein product [Arabidopsis thaliana]         82   7e-14
ref|XP_002866584.1| hypothetical protein ARALYDRAFT_496587 [Arab...    82   7e-14

>ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
           gi|296088517|emb|CBI37508.3| unnamed protein product
           [Vitis vinifera]
          Length = 1043

 Score = 89.4 bits (220), Expect = 6e-16
 Identities = 42/53 (79%), Positives = 49/53 (92%)
 Frame = -3

Query: 259 DEATNSVKLSKKNEIIVWLRLTQCQRQLYEAFLNSELVLSSFDKSPLAALTVL 101
           D+A+ + KLSKKNEIIVWLRLT CQRQLYEAFLNSE+VLS+FD SPLAA+T+L
Sbjct: 576 DDASETAKLSKKNEIIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAAITIL 628



 Score = 65.5 bits (158), Expect = 9e-09
 Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 11/118 (9%)
 Frame = -2

Query: 323 KDSRERIKPYFLRRLRMKYFVR*GNKQCQTFKEE*DYCV-VKIDSV----------SETT 177
           K+ RERI+PYFLRRL+ + F      +     ++ +  V +++ S           SE  
Sbjct: 554 KELRERIQPYFLRRLKNEVFHEDDASETAKLSKKNEIIVWLRLTSCQRQLYEAFLNSEIV 613

Query: 176 L*SFSK**AGSFII**VTFGGINGIKKNCDHPYLLTKRAVEDVLEGMETMVHQDDLSI 3
           L +F     GS          I  +KK CDHP LLTKRAVEDVLEGM++M++Q+DL +
Sbjct: 614 LSAFD----GS------PLAAITILKKICDHPLLLTKRAVEDVLEGMDSMLNQEDLGM 661


>ref|XP_002306264.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222855713|gb|EEE93260.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1058

 Score = 83.2 bits (204), Expect = 4e-14
 Identities = 42/53 (79%), Positives = 48/53 (90%)
 Frame = -3

Query: 259 DEATNSVKLSKKNEIIVWLRLTQCQRQLYEAFLNSELVLSSFDKSPLAALTVL 101
           D+AT + KLS+KNEIIVWLRLT CQRQLYEAFL SE+VLS+FD SPLAALT+L
Sbjct: 613 DDATTA-KLSRKNEIIVWLRLTACQRQLYEAFLRSEIVLSAFDGSPLAALTIL 664



 Score = 58.9 bits (141), Expect = 8e-07
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 12/119 (10%)
 Frame = -2

Query: 323 KDSRERIKPYFLRRLRMKYFVR*GNKQCQTFKEE*DYCVVKIDSVSETT----L*SFSK* 156
           K+ RERI+PYFLRR++            + FKE+ D    K+   +E      L +  + 
Sbjct: 591 KELRERIQPYFLRRMKN-----------EVFKED-DATTAKLSRKNEIIVWLRLTACQRQ 638

Query: 155 *AGSFII**VTFGGING--------IKKNCDHPYLLTKRAVEDVLEGMETMVHQDDLSI 3
              +F+   +     +G        +KK CDHP LLTKRA ED+LEGME+M++ +D ++
Sbjct: 639 LYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDLLEGMESMLNPEDAAV 697


>ref|NP_201200.2| protein chromatin remodeling 24 [Arabidopsis thaliana]
           gi|18087573|gb|AAL58917.1|AF462829_1 AT5g63950/MBM17_5
           [Arabidopsis thaliana] gi|22655364|gb|AAM98274.1|
           At5g63950/MBM17_5 [Arabidopsis thaliana]
           gi|332010436|gb|AED97819.1| protein chromatin remodeling
           24 [Arabidopsis thaliana]
          Length = 1090

 Score = 82.4 bits (202), Expect = 7e-14
 Identities = 42/53 (79%), Positives = 48/53 (90%)
 Frame = -3

Query: 259 DEATNSVKLSKKNEIIVWLRLTQCQRQLYEAFLNSELVLSSFDKSPLAALTVL 101
           D AT+  KLSKK+EI+VWLRLT CQRQLYEAFLNSE+VLS+FD SPLAALT+L
Sbjct: 623 DGATS--KLSKKDEIVVWLRLTACQRQLYEAFLNSEIVLSAFDGSPLAALTIL 673


>dbj|BAA96898.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1053

 Score = 82.4 bits (202), Expect = 7e-14
 Identities = 42/53 (79%), Positives = 48/53 (90%)
 Frame = -3

Query: 259 DEATNSVKLSKKNEIIVWLRLTQCQRQLYEAFLNSELVLSSFDKSPLAALTVL 101
           D AT+  KLSKK+EI+VWLRLT CQRQLYEAFLNSE+VLS+FD SPLAALT+L
Sbjct: 610 DGATS--KLSKKDEIVVWLRLTACQRQLYEAFLNSEIVLSAFDGSPLAALTIL 660


>ref|XP_002866584.1| hypothetical protein ARALYDRAFT_496587 [Arabidopsis lyrata subsp.
           lyrata] gi|297312419|gb|EFH42843.1| hypothetical protein
           ARALYDRAFT_496587 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score = 82.4 bits (202), Expect = 7e-14
 Identities = 42/53 (79%), Positives = 48/53 (90%)
 Frame = -3

Query: 259 DEATNSVKLSKKNEIIVWLRLTQCQRQLYEAFLNSELVLSSFDKSPLAALTVL 101
           D AT+  KLSKK+EI+VWLRLT CQRQLYEAFLNSE+VLS+FD SPLAALT+L
Sbjct: 630 DGATS--KLSKKDEIVVWLRLTACQRQLYEAFLNSEIVLSAFDGSPLAALTIL 680