BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00013561
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Ja...    58   7e-07
gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. ...    57   2e-06
gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp...    55   6e-06
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...    55   8e-06

>gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1250

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 33/94 (35%), Positives = 45/94 (47%)
 Frame = -2

Query: 287 SSQLLHNHLGHSSTKAFLLGLSQPIRPFLKLRRASFCQGCASSKSTHMPLSSIDHCVPAP 108
           SS L H  LGH S+ A        I P  K+   S C  C   K T +P S       +P
Sbjct: 487 SSTLWHRRLGHPSSAAIQTLHKLAILPCTKIDH-SLCHACKLGKHTRLPFSRSQSSTSSP 545

Query: 107 FELIHFDV*MYHVLSCFEFQNYVISTNDYNRYFW 6
           FEL+H DV    VLS   F+ Y++  +D++ + W
Sbjct: 546 FELVHCDVWTSPVLSTSGFKYYLVVLDDFSHFCW 579


>gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis]
          Length = 2301

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
 Frame = -2

Query: 395 LFDIEIVHLLYHGPIQASLYSISHISSPHALTT--IHSSSQLLHNHLGHSSTKAFLLGLS 222
           ++D     +L  G     LYSI   +     +T  + +S ++ H  LGH +    L  L+
Sbjct: 423 IYDKATKKVLLQGRNTKGLYSIKEPAFHAFFSTRQVAASDEVWHQRLGHPNPH-ILQRLA 481

Query: 221 QPIRPFLKLRRASFCQGCASSKSTHMPLSSIDHCVPAPFELIHFDV-*MYHVLSCFEFQN 45
                F+  R  S C  C  +KS+ +P S+       P E IH DV     V+S  EF+ 
Sbjct: 482 SIKSVFINKRSKSLCVSCQMAKSSRLPFSASQFVATRPLERIHCDVWGPSPVVSVQEFKY 541

Query: 44  YVISTNDYNRYFWI 3
           YV+  ++Y+RY W+
Sbjct: 542 YVVLIDNYSRYCWM 555


>gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1296

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
 Frame = -2

Query: 341 LYSI---SHISSPHALTTIHSSSQLLHNHLGHSSTKAFLLGLSQPIRPFLKLRRASFCQG 171
           LYS+   S+ SS HAL    S S + H  LGH S+      LS       K    S CQ 
Sbjct: 472 LYSVTPSSYPSSHHALAATTSDSFIWHRRLGHPSSTLLSHLLSSLSISVPKTDLTSLCQA 531

Query: 170 CASSKSTHMPLSSIDHCVPAPFELIHFDV*MYHVLSCFEFQNYVISTNDYNRYFW 6
           C   K T +P  + +    + FE++H D+    V S    + Y+I  + Y+ + W
Sbjct: 532 CQLGKHTRLPFFNSNTIASSLFEIVHSDIWTSPVPSISGLKYYLIFLDQYSHFVW 586


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1447

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
 Frame = -2

Query: 395 LFDIEIVHLLYHGPIQASLYSISHISSPH--------ALTTIHSSSQLLHNHLGHSSTKA 240
           L D+    LL+ GP +  LY++   SSPH        A   I  S +  H+ LGH ++  
Sbjct: 411 LKDLATKKLLFRGPCRGRLYALPS-SSPHERPRPLKEAFGAIKPSFERWHSRLGHPASPI 469

Query: 239 FLLGLSQPIRPFL-KLRRASFCQGCASSKSTHMPLSSIDHCVPAPFELIHFDV*MYHVLS 63
               +S+   P L +  + S C  C   KS  +P S        P ELI+ DV    + S
Sbjct: 470 VEKVISKNNLPCLAESNKQSVCDACQQGKSHQLPYSRSSSMSSHPLELIYSDVWGPALTS 529

Query: 62  CFEFQNYVISTNDYNRYFWI 3
               Q YV    DY+++ W+
Sbjct: 530 VGGKQYYVSFIGDYSKFTWL 549