BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00013538
         (2768 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...    86   2e-23
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...    86   2e-23
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...    86   2e-23
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    86   1e-22
gb|EEC76774.1| hypothetical protein OsI_14862 [Oryza sativa Indi...    83   6e-21

>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score = 85.9 bits (211), Expect(2) = 2e-23
 Identities = 90/348 (25%), Positives = 140/348 (40%), Gaps = 25/348 (7%)
 Frame = +1

Query: 388  FIICMDVLPKLLSKAEN*G*IHGVKISTLNVPFSHLLFADNNFVFCRANIEDFQ--IDIL 561
            F++C +    LLSK E  G +HG++I       SHLLFAD++ + CRAN  + Q    IL
Sbjct: 873  FLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTIL 932

Query: 562  ETFKLVSGQEVNLKKSGILFRRNTHPXXXXXXXXXXXXXSGITSKNYLGVP-------EK 720
            + ++  SGQ +N  KS ++F  NT                  T++ YLG+P        K
Sbjct: 933  QIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTK 992

Query: 721  *IQHL*YHQQDNPEDGRLERKFSSPGEEAKPYC---GHTTYIMPTFCLVISACSELESLN 891
               +L        + G  E+  S  G+E           T+ M  F L    C ++  + 
Sbjct: 993  IFSYLKERIWQRIQ-GWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTKDLCDQISKMI 1051

Query: 892  SNF*WGQDK--NKTHYIS*EKICQPI*GVWA*GQLTPQQSPYRQAF---LANS*RTGKTL 1056
            + + W   +  NK H++S  K+  P                +R  +   LA   + G  L
Sbjct: 1052 AKYWWSNQEKDNKMHWLSWNKLTLP---------KNMGGLGFRDIYIFNLAMLAKQGWRL 1102

Query: 1057 GEEP---AVEIRAENR*PENEI-----PTVVSKIWKGIIKSRYDILPNLN*HFGNGAEIE 1212
             ++P      +      P  +       + VS  W+ I K    +   +    G+G++I 
Sbjct: 1103 IQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRMGDGSKIN 1162

Query: 1213 IWMDPGIPSITDHKPHGPPQRPTKNKHVSNPIDPSNRIWKEQIVRELF 1356
            IW DP IP     KP  P       K V   IDP    W E ++ + F
Sbjct: 1163 IWADPWIPRGWSRKPMTPRGANLVTK-VEELIDPYTGTWDEDLLSQTF 1209



 Score = 52.4 bits (124), Expect(2) = 2e-23
 Identities = 24/48 (50%), Positives = 30/48 (62%)
 Frame = +2

Query: 248 LGFCAKWRNWIAQCIFTTSLSFKLNGSPAGLLMPERGLRQGDPLSPLL 391
           LGF   W N I +C+ T +   ++NG  +    PERGLRQGDPLSP L
Sbjct: 825 LGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYL 872


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score = 85.5 bits (210), Expect(2) = 2e-23
 Identities = 90/350 (25%), Positives = 141/350 (40%), Gaps = 27/350 (7%)
 Frame = +1

Query: 388  FIICMDVLPKLLSKAEN*G*IHGVKISTLNVPFSHLLFADNNFVFCRANIEDFQ--IDIL 561
            F++C +    LLSK E  G +HG++I       SHLLFAD++ + CRAN  + Q    IL
Sbjct: 845  FLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTIL 904

Query: 562  ETFKLVSGQEVNLKKSGILFRRNTHPXXXXXXXXXXXXXSGITSKNYLGVP-------EK 720
            + ++  SGQ +N  KS ++F  NT                  T++ YLG+P        K
Sbjct: 905  QIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTK 964

Query: 721  *IQHL*YHQQDNPEDGRLERKFSSPGEEAKPYCGHTTYIMPTFC-----LVISACSELES 885
               +L        + G  E+  S  G+E          ++PTF      L    C ++  
Sbjct: 965  IFSYLKERIWQRIQ-GWKEKLLSRAGKEI--LIKAVAQVIPTFAMGCFELTKDLCDQISK 1021

Query: 886  LNSNF*WGQDK--NKTHYIS*EKICQPI*GVWA*GQLTPQQSPYRQAF---LANS*RTGK 1050
            + + + W   +  NK H++S  K+  P                +R  +   LA   + G 
Sbjct: 1022 MIAKYWWSNQEKDNKMHWLSWNKLTLP---------KNMGGLGFRDIYIFNLAMLAKQGW 1072

Query: 1051 TLGEEP---AVEIRAENR*PENEI-----PTVVSKIWKGIIKSRYDILPNLN*HFGNGAE 1206
             L ++P      +      P  +       + VS  W+ I K    +   +    G+G++
Sbjct: 1073 RLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSK 1132

Query: 1207 IEIWMDPGIPSITDHKPHGPPQRPTKNKHVSNPIDPSNRIWKEQIVRELF 1356
            I IW DP IP     KP  P       K V   IDP    W E ++ + F
Sbjct: 1133 INIWADPWIPRGWSRKPMTPRGANLVTK-VEELIDPYTGTWDEDLLSQTF 1181



 Score = 52.4 bits (124), Expect(2) = 2e-23
 Identities = 24/48 (50%), Positives = 30/48 (62%)
 Frame = +2

Query: 248 LGFCAKWRNWIAQCIFTTSLSFKLNGSPAGLLMPERGLRQGDPLSPLL 391
           LGF   W N I +C+ T +   ++NG  +    PERGLRQGDPLSP L
Sbjct: 797 LGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYL 844


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score = 85.5 bits (210), Expect(2) = 2e-23
 Identities = 90/350 (25%), Positives = 141/350 (40%), Gaps = 27/350 (7%)
 Frame = +1

Query: 388  FIICMDVLPKLLSKAEN*G*IHGVKISTLNVPFSHLLFADNNFVFCRANIEDFQ--IDIL 561
            F++C +    LLSK E  G +HG++I       SHLLFAD++ + CRAN  + Q    IL
Sbjct: 841  FLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTIL 900

Query: 562  ETFKLVSGQEVNLKKSGILFRRNTHPXXXXXXXXXXXXXSGITSKNYLGVP-------EK 720
            + ++  SGQ +N  KS ++F  NT                  T++ YLG+P        K
Sbjct: 901  QIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTK 960

Query: 721  *IQHL*YHQQDNPEDGRLERKFSSPGEEAKPYCGHTTYIMPTFC-----LVISACSELES 885
               +L        + G  E+  S  G+E          ++PTF      L    C ++  
Sbjct: 961  IFSYLKERIWQRIQ-GWKEKLLSRAGKEI--LIKAVAQVIPTFAMGCFELTKDLCDQISK 1017

Query: 886  LNSNF*WGQDK--NKTHYIS*EKICQPI*GVWA*GQLTPQQSPYRQAF---LANS*RTGK 1050
            + + + W   +  NK H++S  K+  P                +R  +   LA   + G 
Sbjct: 1018 MIAKYWWSNQEKDNKMHWLSWNKLTLP---------KNMGGLGFRDIYIFNLAMLAKQGW 1068

Query: 1051 TLGEEP---AVEIRAENR*PENEI-----PTVVSKIWKGIIKSRYDILPNLN*HFGNGAE 1206
             L ++P      +      P  +       + VS  W+ I K    +   +    G+G++
Sbjct: 1069 RLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSK 1128

Query: 1207 IEIWMDPGIPSITDHKPHGPPQRPTKNKHVSNPIDPSNRIWKEQIVRELF 1356
            I IW DP IP     KP  P       K V   IDP    W E ++ + F
Sbjct: 1129 INIWADPWIPRGWSRKPMTPRGANLVTK-VEELIDPYTGTWDEDLLSQTF 1177



 Score = 52.4 bits (124), Expect(2) = 2e-23
 Identities = 24/48 (50%), Positives = 30/48 (62%)
 Frame = +2

Query: 248 LGFCAKWRNWIAQCIFTTSLSFKLNGSPAGLLMPERGLRQGDPLSPLL 391
           LGF   W N I +C+ T +   ++NG  +    PERGLRQGDPLSP L
Sbjct: 793 LGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYL 840


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 85.5 bits (210), Expect(2) = 1e-22
 Identities = 90/348 (25%), Positives = 140/348 (40%), Gaps = 25/348 (7%)
 Frame = +1

Query: 388  FIICMDVLPKLLSKAEN*G*IHGVKISTLNVPFSHLLFADNNFVFCRANIEDFQ--IDIL 561
            F++C +    LLSK E  G +HG++I       SHLLFAD++ + CRAN  + Q    IL
Sbjct: 900  FLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTIL 959

Query: 562  ETFKLVSGQEVNLKKSGILFRRNTHPXXXXXXXXXXXXXSGITSKNYLGVP-------EK 720
            + ++  SGQ +N  KS ++F  NT                  T++ YLG+P        K
Sbjct: 960  QIYEECSGQVINKDKSAVMFSPNTSSLEKRAVMAALNMQRETTNERYLGLPVFVGRSRTK 1019

Query: 721  *IQHL*YHQQDNPEDGRLERKFSSPGEEAKPYC---GHTTYIMPTFCLVISACSELESLN 891
               +L        + G  E+  S  G+E           T+ M  F L    C ++  + 
Sbjct: 1020 IFSYLKERIWQRIQ-GWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTKDLCDQISKMI 1078

Query: 892  SNF*WGQDK--NKTHYIS*EKICQPI*GVWA*GQLTPQQSPYRQAF---LANS*RTGKTL 1056
            + + W   +  NK H++S  K+  P                +R  +   LA   + G  L
Sbjct: 1079 AKYWWSNQEKDNKMHWLSWNKLTLP---------KNMGGLGFRDIYIFNLAMLAKQGWRL 1129

Query: 1057 GEEP---AVEIRAENR*PENEI-----PTVVSKIWKGIIKSRYDILPNLN*HFGNGAEIE 1212
             ++P      +      P  +       + VS  W+ I K    +   +    G+G++I 
Sbjct: 1130 IQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKIN 1189

Query: 1213 IWMDPGIPSITDHKPHGPPQRPTKNKHVSNPIDPSNRIWKEQIVRELF 1356
            IW DP IP     KP  P       K V   IDP    W E ++ + F
Sbjct: 1190 IWADPWIPRGWSRKPMTPRGANLVTK-VEELIDPYTGTWDEDLLSQTF 1236



 Score = 49.7 bits (117), Expect(2) = 1e-22
 Identities = 23/48 (47%), Positives = 29/48 (60%)
 Frame = +2

Query: 248 LGFCAKWRNWIAQCIFTTSLSFKLNGSPAGLLMPERGLRQGDPLSPLL 391
           LGF   W N I +C+ T +   ++NG  +    P RGLRQGDPLSP L
Sbjct: 852 LGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPGRGLRQGDPLSPYL 899


>gb|EEC76774.1| hypothetical protein OsI_14862 [Oryza sativa Indica Group]
          Length = 1860

 Score = 82.8 bits (203), Expect(2) = 6e-21
 Identities = 81/305 (26%), Positives = 126/305 (41%), Gaps = 20/305 (6%)
 Frame = +1

Query: 388  FIICMDVLPKLLSKAEN*G*IHGVKISTLNVPFSHLLFADNNFVFCRANIEDFQ--IDIL 561
            F++C + L  +L K E+ G I G++   L  P SHLLFAD++  F R+++   Q   D L
Sbjct: 1418 FLLCTEGLSSILQKKESMGVIQGIRNGRLGPPISHLLFADDSIFFARSDLHSVQGLKDAL 1477

Query: 562  ETFKLVSGQEVNLKKSGILFRRNTHPXXXXXXXXXXXXXSGITSKNYLGVPEK*IQHL*Y 741
            + +   SGQ++NL+KS I F +N                  I    YLG+P +  +    
Sbjct: 1478 QAYCKASGQKINLQKSSIFFGQNCPEDIKNSVKETLQVSVEILQDTYLGMPTEIGRASTG 1537

Query: 742  HQQDNPEDGRLERKFSSPGEEAKPYCGH-----------TTYIMPTFCLVISACSELESL 888
                 PE  R+ R+ +S  +      G             TY+M  F L +S C +++S 
Sbjct: 1538 SFHFLPE--RVWRRVNSWNDRPMSRAGKETMLKAVAQAIPTYVMSCFKLPVSTCEKMKSC 1595

Query: 889  NSNF*WG--QDKNKTHYIS*EKICQPI*GVWA*GQLTPQQSPYRQAFLANS*RTGKTLGE 1062
              +  WG    K K H+ S E +  P       G        + QA LA       T   
Sbjct: 1596 ILDHWWGFEDGKKKMHWRSWEWMTTP---KSLGGMGFRDLGLFNQAMLARQGWRIVTDLV 1652

Query: 1063 EPAVEIRAENR*PENEI-----PTVVSKIWKGIIKSRYDILPNLN*HFGNGAEIEIWMDP 1227
                 +      P +++     PT  S  W+ I+  R  +   +    GNG+ ++I  D 
Sbjct: 1653 SLCARVLKGRYFPNSDLWNAPKPTATSFTWRSILFGRDLLRKGVRWGIGNGSSVKILKDH 1712

Query: 1228 GIPSI 1242
             IP I
Sbjct: 1713 WIPGI 1717



 Score = 47.0 bits (110), Expect(2) = 6e-21
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +2

Query: 248  LGFCAKWRNWIAQCIFTTSLSFKLNGSPAGLLMPERGLRQGDPLSPLLLFAWT 406
            LGF   W   + +C+ +   + ++NG     + P RGLRQGDP+SP L    T
Sbjct: 1370 LGFADPWIQTVMRCVTSVRYAVRINGELTNPVTPSRGLRQGDPISPYLFLLCT 1422