BLASTX nr result
ID: Cimicifuga21_contig00013494
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00013494
(427 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containi... 197 7e-49
ref|XP_002532711.1| pentatricopeptide repeat-containing protein,... 181 7e-44
ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arab... 179 2e-43
ref|NP_191302.2| pentatricopeptide repeat-containing protein [Ar... 177 1e-42
gb|AAP40452.1| unknown protein [Arabidopsis thaliana] 177 1e-42
>ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 197 bits (501), Expect = 7e-49
Identities = 99/142 (69%), Positives = 111/142 (78%)
Frame = -1
Query: 427 ISAYIEMTTTGIPPDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLH 248
IS YIEMT +G PDNFAFPAVLKA S LQDL G+Q+HAA +K GY +S+VTVANTL++
Sbjct: 77 ISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVN 136
Query: 247 MYGKCGNIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQSGRIAPSSFT 68
MYGKCG IGDV KVFDRI +RDQVSWNS IAALC E W+ ALE FR MQ + SSFT
Sbjct: 137 MYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFT 196
Query: 67 LVCVALACSNLSWHDGIRLGKQ 2
LV VALACSNL G+RLGKQ
Sbjct: 197 LVSVALACSNLGVMHGLRLGKQ 218
Score = 64.3 bits (155), Expect = 1e-08
Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Frame = -1
Query: 388 PDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLHMYGKCGNIGDVVK 209
P+ VL +AL + GK++HA I+ S +TV + L+ MY KCG + +
Sbjct: 516 PNAITLMTVLPGCAALAAIAKGKEIHAYAIR-NMLASDITVGSALVDMYAKCGCLNLSRR 574
Query: 208 VFDRIPERDQVSWNSMIAALCGVE-DWDLALEMFRCM-----QSGRIAPSSFTLVCVALA 47
VF+ +P ++ ++WN +I A CG+ + ALE+F+ M + G P+ T + V A
Sbjct: 575 VFNEMPNKNVITWNVLIMA-CGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAA 633
Query: 46 CSN 38
CS+
Sbjct: 634 CSH 636
Score = 62.4 bits (150), Expect = 4e-08
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Frame = -1
Query: 427 ISAYIEMTTTGIPPDNFAFPAVLKAASAL---QDLNCGKQLHAAVIKLGYHTSAVTVANT 257
+ A+ M + +F +V A S L L GKQLH +++G + N
Sbjct: 179 LEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTN--NA 236
Query: 256 LLHMYGKCGNIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQSGRIAPS 77
L+ MY K G + D +F+ +RD VSWN+MI++ + + AL FR M +
Sbjct: 237 LMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELD 296
Query: 76 SFTLVCVALACSNL 35
T+ V ACS+L
Sbjct: 297 GVTIASVLPACSHL 310
>ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527557|gb|EEF29678.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 679
Score = 181 bits (458), Expect = 7e-44
Identities = 83/142 (58%), Positives = 109/142 (76%)
Frame = -1
Query: 427 ISAYIEMTTTGIPPDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLH 248
IS Y++M +G+ PD++AFP VLKA + LQDLN GKQ+HA V+K GY +S+V +AN+L++
Sbjct: 62 ISTYVDMILSGVSPDSYAFPVVLKAVTGLQDLNLGKQIHAHVVKYGYESSSVAIANSLVN 121
Query: 247 MYGKCGNIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQSGRIAPSSFT 68
YGKC + DV KVFDRI ERD VSWNS+I+A C ++W+LALE FR M + + PSSFT
Sbjct: 122 FYGKCSELDDVYKVFDRINERDLVSWNSLISAFCRAQEWELALEAFRFMLAEDLEPSSFT 181
Query: 67 LVCVALACSNLSWHDGIRLGKQ 2
LV +ACSNL H+G+RLGKQ
Sbjct: 182 LVSPVIACSNLRKHEGLRLGKQ 203
Score = 67.8 bits (164), Expect = 9e-10
Identities = 40/132 (30%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Frame = -1
Query: 388 PDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLHMYGKCGNIGDVVK 209
P++ VL ++L L GK++HA ++ S VTV + L+ MY KCG + +
Sbjct: 497 PNSITLMTVLPGCASLAALAKGKEIHAYAVRNAL-ASEVTVGSALVDMYAKCGCLNLSRR 555
Query: 208 VFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQS-----GRIAPSSFTLVCVALAC 44
VFD++P ++ ++WN ++ A + + ALE+F+ M + G + P+ T++ + AC
Sbjct: 556 VFDQMPIKNVITWNVIVMAYGMHGNGEEALELFKDMVAKGDNVGEVKPTEVTMIAILAAC 615
Query: 43 SNLSWHD-GIRL 11
S+ D G++L
Sbjct: 616 SHSGMVDEGLKL 627
Score = 65.9 bits (159), Expect = 3e-09
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = -1
Query: 409 MTTTGIPPDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLHMYGKCG 230
M G+ PD +VL A S L+ L GK++HA ++ G V + L+ MY CG
Sbjct: 273 MVLEGVKPDGVTLASVLPACSYLEMLGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCG 332
Query: 229 NIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMF-RCMQSGRIAPSSFTLVCVA 53
+G +VFD I ER WN+MIA E + AL +F + + P++ T+ +
Sbjct: 333 QVGSGRRVFDGILERKTGLWNAMIAGYAQNEHDEKALMLFIEMVAVAGLCPNTTTMASIV 392
Query: 52 LA 47
A
Sbjct: 393 PA 394
Score = 57.4 bits (137), Expect = 1e-06
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Frame = -1
Query: 427 ISAYIEMTTTGIPPDNFAFPAVLKAASAL---QDLNCGKQLHAAVIKLGYHTSAVTVANT 257
+ A+ M + P +F + + A S L + L GKQ+H + G H S T N
Sbjct: 164 LEAFRFMLAEDLEPSSFTLVSPVIACSNLRKHEGLRLGKQIHGYCFRNG-HWSTFT-NNA 221
Query: 256 LLHMYGKCGNIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQSGRIAPS 77
L+ MY G + D +F +R+ +SWN+MI++ E + AL R M + P
Sbjct: 222 LMTMYANLGRLDDAKFLFKLFEDRNLISWNTMISSFSQNERFVEALMSLRYMVLEGVKPD 281
Query: 76 SFTLVCVALACSNL 35
TL V ACS L
Sbjct: 282 GVTLASVLPACSYL 295
>ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata] gi|297323990|gb|EFH54411.1| hypothetical protein
ARALYDRAFT_486188 [Arabidopsis lyrata subsp. lyrata]
Length = 886
Score = 179 bits (455), Expect = 2e-43
Identities = 85/142 (59%), Positives = 107/142 (75%)
Frame = -1
Query: 427 ISAYIEMTTTGIPPDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLH 248
+ YI+M GI PDNFAFPA+LKA + LQD++ GKQ+HA V K GY +VTVANTL++
Sbjct: 78 VLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVN 137
Query: 247 MYGKCGNIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQSGRIAPSSFT 68
+Y KCG+ G V KVFDRI ER+QVSWNS+I++LC E W++ALE FRCM + PSSFT
Sbjct: 138 LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFT 197
Query: 67 LVCVALACSNLSWHDGIRLGKQ 2
LV VALACSN +G+ +GKQ
Sbjct: 198 LVSVALACSNFPMPEGLLMGKQ 219
Score = 69.7 bits (169), Expect = 2e-10
Identities = 40/119 (33%), Positives = 64/119 (53%)
Frame = -1
Query: 394 IPPDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLHMYGKCGNIGDV 215
+ P++ +L + +AL L GK++HA IK T V V + L+ MY KCG +
Sbjct: 509 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATD-VAVGSALVDMYAKCGCLQMS 567
Query: 214 VKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQSGRIAPSSFTLVCVALACSN 38
KVFD+IP R+ ++WN ++ A + A++M R M + P+ T + V ACS+
Sbjct: 568 RKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSH 626
Score = 67.4 bits (163), Expect = 1e-09
Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Frame = -1
Query: 427 ISAYIEMTTTGIPPDNFAFPAVLKAASAL---QDLNCGKQLHAAVIKLGYHTSAVTVANT 257
+ A+ M + P +F +V A S + L GKQ+HA ++ G S + NT
Sbjct: 180 LEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFII--NT 237
Query: 256 LLHMYGKCGNIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQSGRIAPS 77
L+ MYGK G + + RD V+WN+++++LC E + ALE R M + P
Sbjct: 238 LVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPD 297
Query: 76 SFTLVCVALACSNLSWHDGIRLGKQ 2
FT+ V ACS+L + +R GK+
Sbjct: 298 GFTISSVLPACSHL---EMLRTGKE 319
Score = 63.2 bits (152), Expect = 2e-08
Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Frame = -1
Query: 412 EMTTTGIPPDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLHMYGKC 233
EM G+ PD F +VL A S L+ L GK+LHA +K G V + L+ MY C
Sbjct: 288 EMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 347
Query: 232 GNIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCM-QSGRIAPSSFTLVCV 56
+ +VFD + +R WN+MI E + AL +F M +S + +S T+ V
Sbjct: 348 KQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGV 407
Query: 55 ALAC 44
AC
Sbjct: 408 VPAC 411
>ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 177 bits (448), Expect = 1e-42
Identities = 82/142 (57%), Positives = 105/142 (73%)
Frame = -1
Query: 427 ISAYIEMTTTGIPPDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLH 248
+ Y++M GI PDN+AFPA+LKA + LQD+ GKQ+HA V K GY +VTVANTL++
Sbjct: 82 VLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVN 141
Query: 247 MYGKCGNIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQSGRIAPSSFT 68
+Y KCG+ G V KVFDRI ER+QVSWNS+I++LC E W++ALE FRCM + PSSFT
Sbjct: 142 LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 201
Query: 67 LVCVALACSNLSWHDGIRLGKQ 2
LV V ACSNL +G+ +GKQ
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQ 223
Score = 71.6 bits (174), Expect = 6e-11
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Frame = -1
Query: 394 IPPDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLHMYGKCGNIGDV 215
+ P++ +L + +AL L GK++HA IK T V V + L+ MY KCG +
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATD-VAVGSALVDMYAKCGCLQMS 571
Query: 214 VKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQSGRIAPSSFTLVCVALACSNL 35
KVFD+IP+++ ++WN +I A + A+++ R M + P+ T + V ACS+
Sbjct: 572 RKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHS 631
Query: 34 SWHD-GIRL 11
D G+R+
Sbjct: 632 GMVDEGLRI 640
Score = 69.3 bits (168), Expect = 3e-10
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Frame = -1
Query: 427 ISAYIEMTTTGIPPDNFAFPAVLKAASAL---QDLNCGKQLHAAVIKLGYHTSAVTVANT 257
+ A+ M + P +F +V+ A S L + L GKQ+HA ++ G S + NT
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII--NT 241
Query: 256 LLHMYGKCGNIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQSGRIAPS 77
L+ MYGK G + + RD V+WN+++++LC E ALE R M + P
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301
Query: 76 SFTLVCVALACSNLSWHDGIRLGKQ 2
FT+ V ACS+L + +R GK+
Sbjct: 302 EFTISSVLPACSHL---EMLRTGKE 323
Score = 63.5 bits (153), Expect = 2e-08
Identities = 44/124 (35%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Frame = -1
Query: 412 EMTTTGIPPDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLHMYGKC 233
EM G+ PD F +VL A S L+ L GK+LHA +K G V + L+ MY C
Sbjct: 292 EMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 351
Query: 232 GNIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCM-QSGRIAPSSFTLVCV 56
+ +VFD + +R WN+MIA E AL +F M +S + +S T+ V
Sbjct: 352 KQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 411
Query: 55 ALAC 44
AC
Sbjct: 412 VPAC 415
>gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 177 bits (448), Expect = 1e-42
Identities = 82/142 (57%), Positives = 105/142 (73%)
Frame = -1
Query: 427 ISAYIEMTTTGIPPDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLH 248
+ Y++M GI PDN+AFPA+LKA + LQD+ GKQ+HA V K GY +VTVANTL++
Sbjct: 82 VLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVN 141
Query: 247 MYGKCGNIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQSGRIAPSSFT 68
+Y KCG+ G V KVFDRI ER+QVSWNS+I++LC E W++ALE FRCM + PSSFT
Sbjct: 142 LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 201
Query: 67 LVCVALACSNLSWHDGIRLGKQ 2
LV V ACSNL +G+ +GKQ
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQ 223
Score = 71.6 bits (174), Expect = 6e-11
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Frame = -1
Query: 394 IPPDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLHMYGKCGNIGDV 215
+ P++ +L + +AL L GK++HA IK T V V + L+ MY KCG +
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATD-VAVGSALVDMYAKCGCLQMS 571
Query: 214 VKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQSGRIAPSSFTLVCVALACSNL 35
KVFD+IP+++ ++WN +I A + A+++ R M + P+ T + V ACS+
Sbjct: 572 RKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHS 631
Query: 34 SWHD-GIRL 11
D G+R+
Sbjct: 632 GMVDEGLRI 640
Score = 69.3 bits (168), Expect = 3e-10
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Frame = -1
Query: 427 ISAYIEMTTTGIPPDNFAFPAVLKAASAL---QDLNCGKQLHAAVIKLGYHTSAVTVANT 257
+ A+ M + P +F +V+ A S L + L GKQ+HA ++ G S + NT
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII--NT 241
Query: 256 LLHMYGKCGNIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCMQSGRIAPS 77
L+ MYGK G + + RD V+WN+++++LC E ALE R M + P
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301
Query: 76 SFTLVCVALACSNLSWHDGIRLGKQ 2
FT+ V ACS+L + +R GK+
Sbjct: 302 EFTISSVLPACSHL---EMLRTGKE 323
Score = 63.5 bits (153), Expect = 2e-08
Identities = 44/124 (35%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Frame = -1
Query: 412 EMTTTGIPPDNFAFPAVLKAASALQDLNCGKQLHAAVIKLGYHTSAVTVANTLLHMYGKC 233
EM G+ PD F +VL A S L+ L GK+LHA +K G V + L+ MY C
Sbjct: 292 EMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 351
Query: 232 GNIGDVVKVFDRIPERDQVSWNSMIAALCGVEDWDLALEMFRCM-QSGRIAPSSFTLVCV 56
+ +VFD + +R WN+MIA E AL +F M +S + +S T+ V
Sbjct: 352 KQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 411
Query: 55 ALAC 44
AC
Sbjct: 412 VPAC 415