BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00013247
         (1824 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271674.2| PREDICTED: DNA gyrase subunit A, chloroplast...   805   0.0  
emb|CBI29133.3| unnamed protein product [Vitis vinifera]              805   0.0  
ref|XP_004146774.1| PREDICTED: DNA gyrase subunit A, chloroplast...   778   0.0  
sp|Q5YLB5.1|GYRA_NICBE RecName: Full=DNA gyrase subunit A, chlor...   776   0.0  
ref|XP_002315402.1| predicted protein [Populus trichocarpa] gi|2...   769   0.0  

>ref|XP_002271674.2| PREDICTED: DNA gyrase subunit A, chloroplastic/mitochondrial-like
            [Vitis vinifera]
          Length = 925

 Score =  805 bits (2079), Expect = 0.0
 Identities = 405/536 (75%), Positives = 472/536 (88%), Gaps = 7/536 (1%)
 Frame = -1

Query: 1824 GSDPAIVLNNLFRQTSLQSSFSCNMVGILDKQPKLMGLKELLRAFLDFRCSVIERRARFK 1645
            GSDP+IVLN L+R T+LQSSFSCNM+GILD QPKLMGLKELL+AFLDFRCSV+ERRARFK
Sbjct: 384  GSDPSIVLNKLYRLTALQSSFSCNMIGILDGQPKLMGLKELLQAFLDFRCSVVERRARFK 443

Query: 1644 LSQAQDRKHIVEGIIVGLANVDGVIRIVRESSSNAIASEALRNEYGLSERQAEAXXXXXX 1465
            LSQAQ+R+HIVEGI+VGL N+D VIR+++E+ SNA+AS  LRNE+GLSERQAEA      
Sbjct: 444  LSQAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMASTGLRNEFGLSERQAEAILDISL 503

Query: 1464 XXXXXLESKKFVDEGEALAEQVSKLNELLSSKQQMLHLIEQEAIEVKNKFSTPRRSMLEE 1285
                 LE +KFV E ++L EQ+SKL ELLSS++Q+L LIEQEAIE+KN+FSTPRRSMLE+
Sbjct: 504  RRITRLEREKFVTESKSLMEQISKLQELLSSRKQILQLIEQEAIELKNRFSTPRRSMLED 563

Query: 1284 DDSGQLDDIDVIPNEEMLLALSEKGYLKRMKPNTFNLQHRGTIGKSVGKMRVNDAMSDFL 1105
             DSGQL+D+DVIPNEEMLLA+SEKGY+KRMKPNTFNLQ+RGTIGKSVGK+RVNDAMSDF+
Sbjct: 564  TDSGQLEDVDVIPNEEMLLAVSEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 623

Query: 1104 VCRAHDHILYFSDKGIVYSARAYKIPECSRTAAGTPVVQLLSLSDGERVTSIIPVSEFSE 925
            VC AHD++LYFSD+GIV+SARAYKIPEC+RTAAGTP+VQ+L LSDGER+TSIIPVSEF+E
Sbjct: 624  VCHAHDYVLYFSDRGIVHSARAYKIPECTRTAAGTPLVQILCLSDGERITSIIPVSEFAE 683

Query: 924  DQFLVMLTVNGYIKKVSLKLFSSIRQTGIIAIQLVPGDELKWVRNCSNDDLVAVASQNGK 745
            DQFL+MLT+NGYIKKVSL  FSSIR TGIIAIQLVPGDELKWVR C+NDDLVA+ASQNG 
Sbjct: 684  DQFLLMLTMNGYIKKVSLNFFSSIRSTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGM 743

Query: 744  VFLSSCEVVRALGRNTRGAVAMRLKNGDKVAGMDIVPGAMRKDLQK-------QGKDLTA 586
            V LSSCE++RALGRNTRG++AMRLK GDK+A MDI+P A+RKDL+K       + ++L  
Sbjct: 744  VILSSCEIIRALGRNTRGSIAMRLKQGDKMASMDIIPAAIRKDLEKALEDRQSRARNLNG 803

Query: 585  PWLLFVSEGGFGKRVPVTNFNLSPLNRVGLIGYKLQGEDRLVEVFVVGFSLDEDGESNEQ 406
            PWLLFVSE G GKRVP++ F LSPLNRVGLIGYK   ED L  VFVVGFSL EDGES+EQ
Sbjct: 804  PWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSAEDHLAAVFVVGFSLTEDGESDEQ 863

Query: 405  VVLVSQSGTVNRIKVRDISIQSRFAKGVILMRLEHAGRIQSVSLISAAEEEVETEK 238
            VVLVSQSGT+NRIKV DISIQSRFA+GVILMRLE+AG+IQS SL+SA E E + E+
Sbjct: 864  VVLVSQSGTINRIKVWDISIQSRFARGVILMRLEYAGKIQSASLMSATETETDDEE 919


>emb|CBI29133.3| unnamed protein product [Vitis vinifera]
          Length = 823

 Score =  805 bits (2079), Expect = 0.0
 Identities = 405/536 (75%), Positives = 472/536 (88%), Gaps = 7/536 (1%)
 Frame = -1

Query: 1824 GSDPAIVLNNLFRQTSLQSSFSCNMVGILDKQPKLMGLKELLRAFLDFRCSVIERRARFK 1645
            GSDP+IVLN L+R T+LQSSFSCNM+GILD QPKLMGLKELL+AFLDFRCSV+ERRARFK
Sbjct: 282  GSDPSIVLNKLYRLTALQSSFSCNMIGILDGQPKLMGLKELLQAFLDFRCSVVERRARFK 341

Query: 1644 LSQAQDRKHIVEGIIVGLANVDGVIRIVRESSSNAIASEALRNEYGLSERQAEAXXXXXX 1465
            LSQAQ+R+HIVEGI+VGL N+D VIR+++E+ SNA+AS  LRNE+GLSERQAEA      
Sbjct: 342  LSQAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMASTGLRNEFGLSERQAEAILDISL 401

Query: 1464 XXXXXLESKKFVDEGEALAEQVSKLNELLSSKQQMLHLIEQEAIEVKNKFSTPRRSMLEE 1285
                 LE +KFV E ++L EQ+SKL ELLSS++Q+L LIEQEAIE+KN+FSTPRRSMLE+
Sbjct: 402  RRITRLEREKFVTESKSLMEQISKLQELLSSRKQILQLIEQEAIELKNRFSTPRRSMLED 461

Query: 1284 DDSGQLDDIDVIPNEEMLLALSEKGYLKRMKPNTFNLQHRGTIGKSVGKMRVNDAMSDFL 1105
             DSGQL+D+DVIPNEEMLLA+SEKGY+KRMKPNTFNLQ+RGTIGKSVGK+RVNDAMSDF+
Sbjct: 462  TDSGQLEDVDVIPNEEMLLAVSEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFI 521

Query: 1104 VCRAHDHILYFSDKGIVYSARAYKIPECSRTAAGTPVVQLLSLSDGERVTSIIPVSEFSE 925
            VC AHD++LYFSD+GIV+SARAYKIPEC+RTAAGTP+VQ+L LSDGER+TSIIPVSEF+E
Sbjct: 522  VCHAHDYVLYFSDRGIVHSARAYKIPECTRTAAGTPLVQILCLSDGERITSIIPVSEFAE 581

Query: 924  DQFLVMLTVNGYIKKVSLKLFSSIRQTGIIAIQLVPGDELKWVRNCSNDDLVAVASQNGK 745
            DQFL+MLT+NGYIKKVSL  FSSIR TGIIAIQLVPGDELKWVR C+NDDLVA+ASQNG 
Sbjct: 582  DQFLLMLTMNGYIKKVSLNFFSSIRSTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGM 641

Query: 744  VFLSSCEVVRALGRNTRGAVAMRLKNGDKVAGMDIVPGAMRKDLQK-------QGKDLTA 586
            V LSSCE++RALGRNTRG++AMRLK GDK+A MDI+P A+RKDL+K       + ++L  
Sbjct: 642  VILSSCEIIRALGRNTRGSIAMRLKQGDKMASMDIIPAAIRKDLEKALEDRQSRARNLNG 701

Query: 585  PWLLFVSEGGFGKRVPVTNFNLSPLNRVGLIGYKLQGEDRLVEVFVVGFSLDEDGESNEQ 406
            PWLLFVSE G GKRVP++ F LSPLNRVGLIGYK   ED L  VFVVGFSL EDGES+EQ
Sbjct: 702  PWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSAEDHLAAVFVVGFSLTEDGESDEQ 761

Query: 405  VVLVSQSGTVNRIKVRDISIQSRFAKGVILMRLEHAGRIQSVSLISAAEEEVETEK 238
            VVLVSQSGT+NRIKV DISIQSRFA+GVILMRLE+AG+IQS SL+SA E E + E+
Sbjct: 762  VVLVSQSGTINRIKVWDISIQSRFARGVILMRLEYAGKIQSASLMSATETETDDEE 817


>ref|XP_004146774.1| PREDICTED: DNA gyrase subunit A, chloroplastic/mitochondrial-like
            [Cucumis sativus]
          Length = 923

 Score =  778 bits (2009), Expect = 0.0
 Identities = 394/530 (74%), Positives = 456/530 (86%), Gaps = 1/530 (0%)
 Frame = -1

Query: 1824 GSDPAIVLNNLFRQTSLQSSFSCNMVGILDKQPKLMGLKELLRAFLDFRCSVIERRARFK 1645
            G+DP+IV NNL+R TSLQSSFSCNMVGI++ QPKLMGLKELL+AFLDFRCSV+ERRARFK
Sbjct: 393  GADPSIVQNNLYRLTSLQSSFSCNMVGIINGQPKLMGLKELLQAFLDFRCSVVERRARFK 452

Query: 1644 LSQAQDRKHIVEGIIVGLANVDGVIRIVRESSSNAIASEALRNEYGLSERQAEAXXXXXX 1465
            L  AQ+R+HIVEGI++GL N+DGVIR++RE+SS++IAS +LR ++ LSE+QAEA      
Sbjct: 453  LLHAQERRHIVEGIVIGLDNLDGVIRLIREASSHSIASASLRTQFNLSEKQAEAVLDINL 512

Query: 1464 XXXXXLESKKFVDEGEALAEQVSKLNELLSSKQQMLHLIEQEAIEVKNKFSTPRRSMLEE 1285
                 LE KKF+DE ++L E +SKL ELLSS+  +L LIEQEA E+K+KF  PRRS+LE+
Sbjct: 513  RRLTHLERKKFIDESKSLMENISKLEELLSSRNNILQLIEQEATELKDKFPNPRRSVLED 572

Query: 1284 DDSGQLDDIDVIPNEEMLLALSEKGYLKRMKPNTFNLQHRGTIGKSVGKMRVNDAMSDFL 1105
             DSGQ++DIDVIPNEEMLLA SEKGY+KRMKPNTFNLQHRGTIGKSVGK+RVNDAMSDF+
Sbjct: 573  TDSGQVEDIDVIPNEEMLLAFSEKGYVKRMKPNTFNLQHRGTIGKSVGKLRVNDAMSDFI 632

Query: 1104 VCRAHDHILYFSDKGIVYSARAYKIPECSRTAAGTPVVQLLSLSDGERVTSIIPVSEFSE 925
            VCRAHDH+LYFSDKGIVYSARAYKIPEC RTAAGTP+VQ+LSLSDGER+TSIIPVSEF  
Sbjct: 633  VCRAHDHVLYFSDKGIVYSARAYKIPECGRTAAGTPLVQVLSLSDGERITSIIPVSEFEG 692

Query: 924  DQFLVMLTVNGYIKKVSLKLFSSIRQTGIIAIQLVPGDELKWVRNCSNDDLVAVASQNGK 745
            DQFL+MLT  GYIKKVSL  FSSIR TGIIAIQLV GDELKWVR C+ND+LVA+ASQNG 
Sbjct: 693  DQFLLMLTAYGYIKKVSLNFFSSIRSTGIIAIQLVSGDELKWVRRCTNDNLVAMASQNGM 752

Query: 744  VFLSSCEVVRALGRNTRGAVAMRLKNGDKVAGMDIVPGAMRKDLQK-QGKDLTAPWLLFV 568
            V LSSC+ +RALGRNTRG+VAM+LK GDK+A MDI+P A+  DL++   K    PWLLFV
Sbjct: 753  VILSSCDTIRALGRNTRGSVAMKLKTGDKMASMDIIPAAVWNDLERNSSKSSNGPWLLFV 812

Query: 567  SEGGFGKRVPVTNFNLSPLNRVGLIGYKLQGEDRLVEVFVVGFSLDEDGESNEQVVLVSQ 388
            SE G GKRVP+ +F LSPL RVGLIG K   +DRL  VFVVGFSL EDGES+EQVVLVSQ
Sbjct: 813  SESGVGKRVPLKSFRLSPLRRVGLIGCKFSSQDRLAAVFVVGFSLAEDGESDEQVVLVSQ 872

Query: 387  SGTVNRIKVRDISIQSRFAKGVILMRLEHAGRIQSVSLISAAEEEVETEK 238
            SGTVNRIKVRD+SIQSRFA+GVILMRL+HAG+IQS SLISAAE E E E+
Sbjct: 873  SGTVNRIKVRDVSIQSRFARGVILMRLDHAGKIQSASLISAAETEPEEEE 922


>sp|Q5YLB5.1|GYRA_NICBE RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial;
            Flags: Precursor gi|38017093|gb|AAR07942.1| DNA gyrase A
            subunit [Nicotiana benthamiana]
          Length = 935

 Score =  776 bits (2005), Expect = 0.0
 Identities = 400/535 (74%), Positives = 459/535 (85%), Gaps = 7/535 (1%)
 Frame = -1

Query: 1824 GSDPAIVLNNLFRQTSLQSSFSCNMVGILDKQPKLMGLKELLRAFLDFRCSVIERRARFK 1645
            GSDPAIVLNNL+R T+LQSSFSCNMVGIL+ QPKLMGLKELL+AFLDFRCSV+ERRARFK
Sbjct: 394  GSDPAIVLNNLYRLTALQSSFSCNMVGILNGQPKLMGLKELLQAFLDFRCSVVERRARFK 453

Query: 1644 LSQAQDRKHIVEGIIVGLANVDGVIRIVRESSSNAIASEALRNEYGLSERQAEAXXXXXX 1465
            LSQAQ+R HIVEGIIVGL N+D VI  +R++SSNA+A+ +LR E+ LSE+QAEA      
Sbjct: 454  LSQAQERNHIVEGIIVGLDNLDEVINTIRKASSNALAAASLRKEFELSEKQAEAILDISL 513

Query: 1464 XXXXXLESKKFVDEGEALAEQVSKLNELLSSKQQMLHLIEQEAIEVKNKFSTPRRSMLEE 1285
                 LE  KFV+EG++L  Q+SKL ELLSSK+Q+L LIE+EAIE+KNKF  PRRSMLE+
Sbjct: 514  RRLTALERNKFVEEGKSLRTQISKLEELLSSKKQILQLIEEEAIEIKNKFFNPRRSMLED 573

Query: 1284 DDSGQLDDIDVIPNEEMLLALSEKGYLKRMKPNTFNLQHRGTIGKSVGKMRVNDAMSDFL 1105
             DSG L+DIDVIPNEEMLLA+SEKGY+KRMKP+TFNLQ+RGTIGKSVGK+RVNDAMSDFL
Sbjct: 574  TDSGDLEDIDVIPNEEMLLAISEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFL 633

Query: 1104 VCRAHDHILYFSDKGIVYSARAYKIPECSRTAAGTPVVQLLSLSDGERVTSIIPVSEFSE 925
            VCRAHD +LYFSDKG VYS+ AYKIPECSRTAAGTP+VQ+LSLSDGER+TSIIPVSEF+ 
Sbjct: 634  VCRAHDKVLYFSDKGTVYSSPAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFAA 693

Query: 924  DQFLVMLTVNGYIKKVSLKLFSSIRQTGIIAIQLVPGDELKWVRNCSNDDLVAVASQNGK 745
            DQ+LVMLTVNGYIKKVSL  F+SIR TGIIAIQLVP DELKWV+ CSN+D VA+ASQNG 
Sbjct: 694  DQYLVMLTVNGYIKKVSLNYFASIRCTGIIAIQLVPDDELKWVKCCSNNDFVAMASQNGM 753

Query: 744  VFLSSCEVVRALGRNTRGAVAMRLKNGDKVAGMDIVPGAMRKDL-------QKQGKDLTA 586
            V L+ C  +RALGRNTRG+VAMRLK GDKVA MDI+P A++K+L       Q+Q + +  
Sbjct: 754  VILTPCANIRALGRNTRGSVAMRLKEGDKVASMDIIPDALQKELDKTLEVQQRQYRSMKG 813

Query: 585  PWLLFVSEGGFGKRVPVTNFNLSPLNRVGLIGYKLQGEDRLVEVFVVGFSLDEDGESNEQ 406
            PWLLFVSE G+GKRVPV+ F  SPLNRVGL GYK   ED L  VFVVGFSL EDGES+EQ
Sbjct: 814  PWLLFVSESGYGKRVPVSRFRTSPLNRVGLFGYKFSSEDCLAAVFVVGFSLGEDGESDEQ 873

Query: 405  VVLVSQSGTVNRIKVRDISIQSRFAKGVILMRLEHAGRIQSVSLISAAEEEVETE 241
            VVLVSQSGTVNRIKVRDISIQSR+A+GVILMRLEHAG+IQS SLISAA+ + E E
Sbjct: 874  VVLVSQSGTVNRIKVRDISIQSRYARGVILMRLEHAGKIQSASLISAADADPEDE 928


>ref|XP_002315402.1| predicted protein [Populus trichocarpa] gi|222864442|gb|EEF01573.1|
            predicted protein [Populus trichocarpa]
          Length = 932

 Score =  769 bits (1985), Expect = 0.0
 Identities = 394/532 (74%), Positives = 454/532 (85%), Gaps = 6/532 (1%)
 Frame = -1

Query: 1824 GSDPAIVLNNLFRQTSLQSSFSCNMVGILDKQPKLMGLKELLRAFLDFRCSVIERRARFK 1645
            G+DP+IVLNNL+R T LQSSFSCNMVGILD QPK MGLKELL+AFLDFRCSV+ERRA FK
Sbjct: 387  GADPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKELLQAFLDFRCSVVERRAMFK 446

Query: 1644 LSQAQDRKHIVEGIIVGLANVDGVIRIVRESSSNAIASEALRNEYGLSERQAEAXXXXXX 1465
            LS+AQ R+HIVEG++ GL N+D V+ I+R++SSNAIAS  LRNE+ LSE+QAEA      
Sbjct: 447  LSEAQKRRHIVEGVMAGLDNLDRVVDIIRKASSNAIASADLRNEFSLSEKQAEAILDISL 506

Query: 1464 XXXXXLESKKFVDEGEALAEQVSKLNELLSSKQQMLHLIEQEAIEVKNKFSTPRRSMLEE 1285
                 LE KKFV+E ++L EQ++KL ELLSS+  +L LIEQEA+E+KNKFS PRRSMLE+
Sbjct: 507  RRLTLLEGKKFVEESKSLMEQITKLEELLSSRGNILQLIEQEAVELKNKFSNPRRSMLED 566

Query: 1284 DDSGQLDDIDVIPNEEMLLALSEKGYLKRMKPNTFNLQHRGTIGKSVGKMRVNDAMSDFL 1105
             DSGQL+DIDVIPNEEMLLA+SEKGY+KRMKPNTFNLQ+RGTIGKSVGK+R +DAMSDF+
Sbjct: 567  SDSGQLEDIDVIPNEEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRDSDAMSDFI 626

Query: 1104 VCRAHDHILYFSDKGIVYSARAYKIPECSRTAAGTPVVQLLSLSDGERVTSIIPVSEFSE 925
            VC AHD +LYFSD+GIVYSA AYKIPEC+R AAGTP++Q LSLSDGER+TSIIPVSEF E
Sbjct: 627  VCHAHDRVLYFSDQGIVYSAPAYKIPECTRAAAGTPLIQFLSLSDGERITSIIPVSEFVE 686

Query: 924  DQFLVMLTVNGYIKKVSLKLFSSIRQTGIIAIQLVPGDELKWVRNCSNDDLVAVASQNGK 745
            DQFL+MLTVNGYIKKVSL  FS+IR TGIIAIQLVPGDELKWVR C+N DLVA+ASQNG 
Sbjct: 687  DQFLLMLTVNGYIKKVSLNSFSAIRSTGIIAIQLVPGDELKWVRCCTNGDLVAMASQNGM 746

Query: 744  VFLSSCEVVRALGRNTRGAVAMRLKNGDKVAGMDIVPGAMRKDLQKQGKDL------TAP 583
            V L+SCE +RALGRNTRG VAMRL+ GDK+A MDI+P +++KDL+   KD       T P
Sbjct: 747  VILTSCENIRALGRNTRGGVAMRLREGDKIASMDIIPASLQKDLEVASKDSENNNKGTGP 806

Query: 582  WLLFVSEGGFGKRVPVTNFNLSPLNRVGLIGYKLQGEDRLVEVFVVGFSLDEDGESNEQV 403
            WLLFVSE G GKRVP+++F  S LNRVGLIGYK   ED L  VF VGFSL EDGES+EQV
Sbjct: 807  WLLFVSESGHGKRVPLSSFKQSRLNRVGLIGYKFFEEDHLAAVFAVGFSLTEDGESDEQV 866

Query: 402  VLVSQSGTVNRIKVRDISIQSRFAKGVILMRLEHAGRIQSVSLISAAEEEVE 247
            VLVSQSGTVNRIKVRDISIQSRFA+GVILMRLEHAG+IQS SLISAA+ E+E
Sbjct: 867  VLVSQSGTVNRIKVRDISIQSRFARGVILMRLEHAGKIQSTSLISAADPELE 918