BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00012965
         (736 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298160.1| predicted protein [Populus trichocarpa] gi|2...   110   3e-22
ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-li...   108   1e-21
ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis ...   102   8e-20
ref|NP_680188.1| replication factor C1 [Arabidopsis thaliana] gi...   102   8e-20
ref|XP_004156105.1| PREDICTED: replication factor C subunit 1-li...   100   4e-19

>ref|XP_002298160.1| predicted protein [Populus trichocarpa] gi|222845418|gb|EEE82965.1|
           predicted protein [Populus trichocarpa]
          Length = 550

 Score =  110 bits (275), Expect = 3e-22
 Identities = 65/142 (45%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
 Frame = -1

Query: 511 MSNDIRKWFIKHDDKKNGSANXXXXXXXXXXXXXTNSKPDNSAQGGQESSARRKTSKYFA 332
           M  DIRKWF+K  DK N +A              T  K +    GGQE S RRKTSKYFA
Sbjct: 1   MQRDIRKWFMKAHDKGNDNA----ATNAEKKPPPTEPKTETPVCGGQEGSGRRKTSKYFA 56

Query: 331 GDAQNPKVEKETEKSPAKRKPQKSS-DDVKPPSAKKLHK--GEDDDEDFATPSVNKNSED 161
            + Q  K +KE E  PAKRK Q      VKPP +KK+HK   E++D+DF+ P   K   D
Sbjct: 57  ANKQKQKEDKEIEDLPAKRKAQNDGVQSVKPPPSKKVHKVDDEEEDDDFSLP---KKKND 113

Query: 160 VTTTKKLKSATGRGIPKKSVYI 95
            + +KKLKS++GRGI +K V++
Sbjct: 114 ASPSKKLKSSSGRGIAQKPVHV 135


>ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
          Length = 1112

 Score =  108 bits (270), Expect = 1e-21
 Identities = 61/140 (43%), Positives = 83/140 (59%)
 Frame = -1

Query: 511 MSNDIRKWFIKHDDKKNGSANXXXXXXXXXXXXXTNSKPDNSAQGGQESSARRKTSKYFA 332
           +++DIRKWF+K  DK N +A+               S  + +  GGQESS RR TSKYF 
Sbjct: 161 VASDIRKWFMKTHDKGNNAASSKPSNQPKPSSDKPQS--EKTVAGGQESSGRRITSKYFN 218

Query: 331 GDAQNPKVEKETEKSPAKRKPQKSSDDVKPPSAKKLHKGEDDDEDFATPSVNKNSEDVTT 152
            + Q  K +KE ++ PAKRK  K S+++  P  KK+H  EDD +D   P+  K   D T 
Sbjct: 219 SNKQKGKDKKEMQELPAKRKNMKDSEEI--PEPKKIH--EDDGDDSVLPTNKKKLADTTP 274

Query: 151 TKKLKSATGRGIPKKSVYIE 92
           TKKLKS +GRG+P+KS  +E
Sbjct: 275 TKKLKSGSGRGLPQKSAVLE 294


>ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297319877|gb|EFH50299.1| AAA-type ATPase family
           protein [Arabidopsis lyrata subsp. lyrata]
          Length = 960

 Score =  102 bits (254), Expect = 8e-20
 Identities = 62/158 (39%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
 Frame = -1

Query: 505 NDIRKWFIKHDDKKNGSANXXXXXXXXXXXXXTNSKPDNSAQGGQ--ESSARRKTSKYFA 332
           +DIRKWF+K  +K N SA                + P  S Q  +  E++ARRKTSK+F 
Sbjct: 2   SDIRKWFMKAHEKGNASAPKSTSSKAGPARNAAETAPLKSEQASEDLETAARRKTSKFFG 61

Query: 331 GDAQNPKVEKETEKSPAKRKPQKSSDDVKPPSAKKLHK--GEDDDEDFATPSVNKNSEDV 158
            D    K EKE E+ PAKRK +  SDD+  P  +K+ K   +DDD+DF  P +++ + D 
Sbjct: 62  KDKTKVKDEKEVEEIPAKRKLKTDSDDLAKPRPRKVTKVVDDDDDDDFDVP-ISRKTRDS 120

Query: 157 TTTKKLKSATGRGIPKKSVYIENXXXXXXXXXXATPVK 44
           T +KKLKS +GRGI  K+V  +            TP+K
Sbjct: 121 TPSKKLKSGSGRGIASKTVDNDEDDDGEDAQDKETPLK 158


>ref|NP_680188.1| replication factor C1 [Arabidopsis thaliana]
           gi|13374860|emb|CAC34494.1| replication factor C large
           subunit-like protein [Arabidopsis thaliana]
           gi|48958527|gb|AAT47816.1| At5g22010 [Arabidopsis
           thaliana] gi|332005585|gb|AED92968.1| replication factor
           C1 [Arabidopsis thaliana]
          Length = 956

 Score =  102 bits (254), Expect = 8e-20
 Identities = 58/137 (42%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
 Frame = -1

Query: 505 NDIRKWFIKHDDKKNGSANXXXXXXXXXXXXXTNSKPDNSAQGGQ--ESSARRKTSKYFA 332
           +DIRKWF+K  +K NGSA                + P  S Q  +  E++ RRKTSKYF 
Sbjct: 2   SDIRKWFMKAHEKGNGSAPKSTSSKAGPVKNAAETAPIKSEQASEDLETADRRKTSKYFG 61

Query: 331 GDAQNPKVEKETEKSPAKRKPQKSSDDVKPPSAKKLHKGEDDDEDFATPSVNKNSEDVTT 152
            D    K EKE E  PAKRK +  SDD+  P  +K+ K  DDD+D     +++ + D T 
Sbjct: 62  KDKTKVKDEKEVEAIPAKRKLKTESDDLVKPRPRKVTKVVDDDDDDFDVPISRKTRDTTP 121

Query: 151 TKKLKSATGRGIPKKSV 101
           +KKLKS +GRGI  K+V
Sbjct: 122 SKKLKSGSGRGIASKTV 138


>ref|XP_004156105.1| PREDICTED: replication factor C subunit 1-like [Cucumis sativus]
          Length = 942

 Score =  100 bits (248), Expect = 4e-19
 Identities = 59/138 (42%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
 Frame = -1

Query: 502 DIRKWFIKHDDKKNGSANXXXXXXXXXXXXXTNSKPDNSAQGGQESSARRKTSKYFAGDA 323
           DIRKWF+K  DK NGS +              ++    +   G ES+ R+ TSKYFA + 
Sbjct: 3   DIRKWFMKAHDKDNGSGSKKAKPAPSSLEK--SASAGKTGPSGGESAGRQITSKYFASEK 60

Query: 322 QNPKVEKETEKSPAKRKPQK-SSDDVKPPSAKKLHKGEDDDEDFATPSVNKNSEDVTTTK 146
           Q  K  +ETE+SPAKRK QK + +  K    KK +K +D+D+D    S  KN  +VT  K
Sbjct: 61  QEAKDAEETEESPAKRKFQKYNEESPKASPLKKSNKVDDNDDDAVLSSSKKNMSEVTPNK 120

Query: 145 KLKSATGRGIPKKSVYIE 92
           KLKS +G+GI +K V IE
Sbjct: 121 KLKSGSGKGITQKPVEIE 138