BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00012919
         (1174 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II su...   256   8e-66
emb|CBI26363.3| unnamed protein product [Vitis vinifera]              250   6e-64
ref|XP_002312568.1| predicted protein [Populus trichocarpa] gi|2...   248   2e-63
ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II su...   248   2e-63
ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypep...   248   2e-63

>ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449522228|ref|XP_004168129.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
          Length = 175

 Score =  256 bits (654), Expect = 8e-66
 Identities = 123/177 (69%), Positives = 152/177 (85%)
 Frame = +2

Query: 386 MYLKVELPWNVLIPPENLDAKGLMLQRAIIIRLMDEFARRKATKDHGYFIAPTTLNNIGE 565
           M+LKV+LPWNV+IP ENLDAKGLMLQR+IIIRL+DEFA +KATKD GYF+A TTL NIGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 566 GKVRQESSGGVLFPVVFNCITFKPFKGEVLKGVVNKVMKQGVLLTCGPIENVFIAALMMP 745
           GKVRQ  +G VLFPV+F+ ITFK ++GE+L+GVV+KV+K GV L CGP+EN++++ L MP
Sbjct: 61  GKVRQ--TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMP 118

Query: 746 DFEYVQGENPVFMSDSLMKIEKDVEVRFVVIGTKWIETDREFKVLGSLACDHLGPVS 916
           D+ YV GENPVF++D L KIEKDV VRF+VIGTKW+E +REF+ L SL  D+LGPVS
Sbjct: 119 DYRYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175


>emb|CBI26363.3| unnamed protein product [Vitis vinifera]
          Length = 242

 Score =  250 bits (638), Expect = 6e-64
 Identities = 117/183 (63%), Positives = 154/183 (84%)
 Frame = +2

Query: 368 LKFRPTMYLKVELPWNVLIPPENLDAKGLMLQRAIIIRLMDEFARRKATKDHGYFIAPTT 547
           ++++  M+LKV+LPWNV+IP E LDAKGLMLQR+IIIRL+D F+ +KAT++ GYF+A TT
Sbjct: 60  VRWKTEMFLKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAFSNKKATQELGYFLAVTT 119

Query: 548 LNNIGEGKVRQESSGGVLFPVVFNCITFKPFKGEVLKGVVNKVMKQGVLLTCGPIENVFI 727
           L NIGEGKVRQ S G VLFPVVF+C+TFK F+GE+L GVV+KV+K GV+L CGP+EN+++
Sbjct: 120 LENIGEGKVRQHS-GDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYL 178

Query: 728 AALMMPDFEYVQGENPVFMSDSLMKIEKDVEVRFVVIGTKWIETDREFKVLGSLACDHLG 907
           +   MPD+ YV GENPVF+++ L KIEKDV VRF+V+GTKW+E +REF+ L SL  D+LG
Sbjct: 179 SCQKMPDYRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLG 238

Query: 908 PVS 916
           P+S
Sbjct: 239 PLS 241


>ref|XP_002312568.1| predicted protein [Populus trichocarpa] gi|222852388|gb|EEE89935.1|
           predicted protein [Populus trichocarpa]
          Length = 176

 Score =  248 bits (634), Expect = 2e-63
 Identities = 117/177 (66%), Positives = 151/177 (85%)
 Frame = +2

Query: 386 MYLKVELPWNVLIPPENLDAKGLMLQRAIIIRLMDEFARRKATKDHGYFIAPTTLNNIGE 565
           M+LKV+LPWNV+IP ENLDAKGLMLQR+I++RL+D+FA++ ATKD GY++A +TL +IGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKGATKDLGYYLAVSTLESIGE 60

Query: 566 GKVRQESSGGVLFPVVFNCITFKPFKGEVLKGVVNKVMKQGVLLTCGPIENVFIAALMMP 745
           GKVRQ + G VLFPVVF+ ITFK F+GE+L G+V+KV+K GVLL CGPIEN++++ + MP
Sbjct: 61  GKVRQHT-GDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMP 119

Query: 746 DFEYVQGENPVFMSDSLMKIEKDVEVRFVVIGTKWIETDREFKVLGSLACDHLGPVS 916
           D+ YV GENPVF++D   KIEKDV VRFVV+GTKW+E +REF+ L SL  D+LGPVS
Sbjct: 120 DYRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS 176


>ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
           vinifera] gi|147822056|emb|CAN61549.1| hypothetical
           protein VITISV_043525 [Vitis vinifera]
          Length = 177

 Score =  248 bits (634), Expect = 2e-63
 Identities = 117/177 (66%), Positives = 150/177 (84%)
 Frame = +2

Query: 386 MYLKVELPWNVLIPPENLDAKGLMLQRAIIIRLMDEFARRKATKDHGYFIAPTTLNNIGE 565
           M+LKV+LPWNV+IP E LDAKGLMLQR+IIIRL+D F+ +KAT++ GYF+A TTL NIGE
Sbjct: 1   MFLKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAFSNKKATQELGYFLAVTTLENIGE 60

Query: 566 GKVRQESSGGVLFPVVFNCITFKPFKGEVLKGVVNKVMKQGVLLTCGPIENVFIAALMMP 745
           GKVRQ S G VLFPVVF+C+TFK F+GE+L GVV+KV+K GV+L CGP+EN++++   MP
Sbjct: 61  GKVRQHS-GDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKMP 119

Query: 746 DFEYVQGENPVFMSDSLMKIEKDVEVRFVVIGTKWIETDREFKVLGSLACDHLGPVS 916
           D+ YV GENPVF+++ L KIEKDV VRF+V+GTKW+E +REF+ L SL  D+LGP+S
Sbjct: 120 DYRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPLS 176


>ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
           [Ricinus communis] gi|223538083|gb|EEF39694.1|
           DNA-directed RNA polymerase II 19 kD polypeptide rpb7,
           putative [Ricinus communis]
          Length = 176

 Score =  248 bits (633), Expect = 2e-63
 Identities = 119/177 (67%), Positives = 150/177 (84%)
 Frame = +2

Query: 386 MYLKVELPWNVLIPPENLDAKGLMLQRAIIIRLMDEFARRKATKDHGYFIAPTTLNNIGE 565
           MYLKV+LPWNV+I  E+LDAKGLMLQR+IIIRL+++FA +KATKD GY++A TTL +IGE
Sbjct: 1   MYLKVQLPWNVIISAEHLDAKGLMLQRSIIIRLLEDFASKKATKDLGYYLAVTTLESIGE 60

Query: 566 GKVRQESSGGVLFPVVFNCITFKPFKGEVLKGVVNKVMKQGVLLTCGPIENVFIAALMMP 745
           GKVR E +G VLFPVVFN ITFK F+GE+L+GVV+KV+K GV + CGPIEN++++ + MP
Sbjct: 61  GKVR-EHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFIRCGPIENIYLSCMKMP 119

Query: 746 DFEYVQGENPVFMSDSLMKIEKDVEVRFVVIGTKWIETDREFKVLGSLACDHLGPVS 916
           D+ YV GENPVF++D   KIEKDV VRF+VIGTKW+E +REF+ L SL  D+LGPVS
Sbjct: 120 DYHYVPGENPVFLNDKTSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176