BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00012888
         (1204 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283591.1| PREDICTED: KH domain-containing protein At4g...   344   6e-97
emb|CBI19333.3| unnamed protein product [Vitis vinifera]              344   6e-97
ref|XP_002510014.1| Poly(rC)-binding protein, putative [Ricinus ...   325   7e-92
ref|XP_002302373.1| predicted protein [Populus trichocarpa] gi|2...   303   2e-84
ref|XP_003522728.1| PREDICTED: KH domain-containing protein At4g...   304   2e-84

>ref|XP_002283591.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
            vinifera]
          Length = 701

 Score =  344 bits (883), Expect(2) = 6e-97
 Identities = 193/305 (63%), Positives = 224/305 (73%), Gaps = 12/305 (3%)
 Frame = +2

Query: 68   VLRVQGRIARGTPDINEKIVISRLLVSTIQIGCLLGKGGSIIAEMRKLSGAYIFIVPKDQ 247
            VLRVQ RI R  PD  EK VI+RLLVS+ QIGCLLGKGG+IIAEMRKLSGA+I I+ KDQ
Sbjct: 401  VLRVQSRIVRAIPDSKEKTVIARLLVSSTQIGCLLGKGGAIIAEMRKLSGAHIRILGKDQ 460

Query: 248  IPKCASENEEVMQIQGEFESVQEALLQITSRLRHHLLFGDTFPSINHPVHPAFHDQVPPF 427
            IPKCASENEEV+QI GEFE+VQEALLQIT+RLRHH  F D F S+NHP +PAF DQVPPF
Sbjct: 461  IPKCASENEEVVQINGEFEAVQEALLQITTRLRHH-HFRDAF-SVNHPSNPAFTDQVPPF 518

Query: 428  -PYMGRRQPSPPGMYSGLGG----------LPPLGRIHPQDDRSAFMHNIHRQGI-SHNS 571
             PY+ RR+ SPPGMYS LG           L P G  HP DDR+ FMH+IHR GI  H  
Sbjct: 519  PPYLARREFSPPGMYSNLGPSFHKFDAVGVLHPHGGFHPHDDRAPFMHSIHRLGIPPHIP 578

Query: 572  GRISSSARWEPQGITEAGRPLGILEYAEGTPQRRLXXXXXXXSQPAXXXXXXXXXXXPRA 751
             R  SSA W  QG+ E G P+G+ ++A G PQRR+       +Q A           PR+
Sbjct: 579  ERKPSSAPWGHQGLIEGGVPIGLADFA-GGPQRRI-PGFGGGNQQAIITSTTVEVVVPRS 636

Query: 752  IVPSIYGEDGSSLKQIRQISGAKITITDPKPGATETVILINGTHEQAHAAQSLLQAFVLS 931
            +VPSIYGEDG  L+QIRQIS AKITIT+PKPGA+ETVI+I+GT EQ HAAQSL+QAFVLS
Sbjct: 637  LVPSIYGEDGGCLRQIRQISDAKITITEPKPGASETVIIISGTPEQTHAAQSLIQAFVLS 696

Query: 932  GSDSP 946
             ++SP
Sbjct: 697  ETESP 701



 Score = 37.7 bits (86), Expect(2) = 6e-97
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   DIKILEGVPDSEDRIIVISGPA 68
           +IK+L+GVPDSEDR+I ISG A
Sbjct: 367 EIKVLDGVPDSEDRVIFISGSA 388



 Score = 87.8 bits (216), Expect = 5e-15
 Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 8/285 (2%)
 Frame = +2

Query: 50  SHIWSCVLRVQGRIARGTPDIN--------EKIVISRLLVSTIQIGCLLGKGGSIIAEMR 205
           S +   +L V  R+A G  + N            + RLLV + Q+GCLLGKGGS+I +M 
Sbjct: 149 SSVQKALLLVFERMAEGESETNGGDEDSNKSPTFVVRLLVLSSQVGCLLGKGGSVIKQMS 208

Query: 206 KLSGAYIFIVPKDQIPKCASENEEVMQIQGEFESVQEALLQITSRLRHHLLFGDTFPSIN 385
             SGA I I+P+D++P CAS ++E++QI GE ++ ++AL  I+ +L  +        S N
Sbjct: 209 AESGAQIRILPRDKLPLCASPSDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTN 268

Query: 386 HPVHPAFHDQVPPFPYMGRRQPSPPGMYSGLGGLPPLGRIHPQDDRSAFMHNIHRQGISH 565
            P   + H   PP P   R +  PP  YS     P  G  +    R    H+        
Sbjct: 269 -PTGSSSHLFGPPLP---RSEAQPPPNYS----FPAQGAPYAAGVRDTDYHS-------- 312

Query: 566 NSGRISSSARWEPQGITEAGRPLGILEYAEGTPQRRLXXXXXXXSQPAXXXXXXXXXXXP 745
           N+ ++    ++   G+    +P  IL +       R                        
Sbjct: 313 NTPQLH---KFHESGMPGWMKPQDILTFRLLCHDER------------------------ 345

Query: 746 RAIVPSIYGEDGSSLKQIRQISGAKITITDPKPGATETVILINGT 880
              V  I G+ G+ +K ++  +G +I + D  P + + VI I+G+
Sbjct: 346 ---VGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGS 387


>emb|CBI19333.3| unnamed protein product [Vitis vinifera]
          Length = 672

 Score =  344 bits (883), Expect(2) = 6e-97
 Identities = 193/305 (63%), Positives = 224/305 (73%), Gaps = 12/305 (3%)
 Frame = +2

Query: 68   VLRVQGRIARGTPDINEKIVISRLLVSTIQIGCLLGKGGSIIAEMRKLSGAYIFIVPKDQ 247
            VLRVQ RI R  PD  EK VI+RLLVS+ QIGCLLGKGG+IIAEMRKLSGA+I I+ KDQ
Sbjct: 372  VLRVQSRIVRAIPDSKEKTVIARLLVSSTQIGCLLGKGGAIIAEMRKLSGAHIRILGKDQ 431

Query: 248  IPKCASENEEVMQIQGEFESVQEALLQITSRLRHHLLFGDTFPSINHPVHPAFHDQVPPF 427
            IPKCASENEEV+QI GEFE+VQEALLQIT+RLRHH  F D F S+NHP +PAF DQVPPF
Sbjct: 432  IPKCASENEEVVQINGEFEAVQEALLQITTRLRHH-HFRDAF-SVNHPSNPAFTDQVPPF 489

Query: 428  -PYMGRRQPSPPGMYSGLGG----------LPPLGRIHPQDDRSAFMHNIHRQGI-SHNS 571
             PY+ RR+ SPPGMYS LG           L P G  HP DDR+ FMH+IHR GI  H  
Sbjct: 490  PPYLARREFSPPGMYSNLGPSFHKFDAVGVLHPHGGFHPHDDRAPFMHSIHRLGIPPHIP 549

Query: 572  GRISSSARWEPQGITEAGRPLGILEYAEGTPQRRLXXXXXXXSQPAXXXXXXXXXXXPRA 751
             R  SSA W  QG+ E G P+G+ ++A G PQRR+       +Q A           PR+
Sbjct: 550  ERKPSSAPWGHQGLIEGGVPIGLADFA-GGPQRRI-PGFGGGNQQAIITSTTVEVVVPRS 607

Query: 752  IVPSIYGEDGSSLKQIRQISGAKITITDPKPGATETVILINGTHEQAHAAQSLLQAFVLS 931
            +VPSIYGEDG  L+QIRQIS AKITIT+PKPGA+ETVI+I+GT EQ HAAQSL+QAFVLS
Sbjct: 608  LVPSIYGEDGGCLRQIRQISDAKITITEPKPGASETVIIISGTPEQTHAAQSLIQAFVLS 667

Query: 932  GSDSP 946
             ++SP
Sbjct: 668  ETESP 672



 Score = 37.7 bits (86), Expect(2) = 6e-97
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   DIKILEGVPDSEDRIIVISGPA 68
           +IK+L+GVPDSEDR+I ISG A
Sbjct: 338 EIKVLDGVPDSEDRVIFISGSA 359



 Score = 87.8 bits (216), Expect = 5e-15
 Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 8/285 (2%)
 Frame = +2

Query: 50  SHIWSCVLRVQGRIARGTPDIN--------EKIVISRLLVSTIQIGCLLGKGGSIIAEMR 205
           S +   +L V  R+A G  + N            + RLLV + Q+GCLLGKGGS+I +M 
Sbjct: 120 SSVQKALLLVFERMAEGESETNGGDEDSNKSPTFVVRLLVLSSQVGCLLGKGGSVIKQMS 179

Query: 206 KLSGAYIFIVPKDQIPKCASENEEVMQIQGEFESVQEALLQITSRLRHHLLFGDTFPSIN 385
             SGA I I+P+D++P CAS ++E++QI GE ++ ++AL  I+ +L  +        S N
Sbjct: 180 AESGAQIRILPRDKLPLCASPSDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTN 239

Query: 386 HPVHPAFHDQVPPFPYMGRRQPSPPGMYSGLGGLPPLGRIHPQDDRSAFMHNIHRQGISH 565
            P   + H   PP P   R +  PP  YS     P  G  +    R    H+        
Sbjct: 240 -PTGSSSHLFGPPLP---RSEAQPPPNYS----FPAQGAPYAAGVRDTDYHS-------- 283

Query: 566 NSGRISSSARWEPQGITEAGRPLGILEYAEGTPQRRLXXXXXXXSQPAXXXXXXXXXXXP 745
           N+ ++    ++   G+    +P  IL +       R                        
Sbjct: 284 NTPQLH---KFHESGMPGWMKPQDILTFRLLCHDER------------------------ 316

Query: 746 RAIVPSIYGEDGSSLKQIRQISGAKITITDPKPGATETVILINGT 880
              V  I G+ G+ +K ++  +G +I + D  P + + VI I+G+
Sbjct: 317 ---VGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGS 358


>ref|XP_002510014.1| Poly(rC)-binding protein, putative [Ricinus communis]
            gi|223550715|gb|EEF52201.1| Poly(rC)-binding protein,
            putative [Ricinus communis]
          Length = 679

 Score =  325 bits (833), Expect(2) = 7e-92
 Identities = 182/299 (60%), Positives = 214/299 (71%), Gaps = 7/299 (2%)
 Frame = +2

Query: 68   VLRVQGRIARGTP--DINEKIVISRLLVSTIQIGCLLGKGGSIIAEMRKLSGAYIFIVPK 241
            VLRVQ RIAR  P  +  EK VI RLLVS+ QIGCLLGKGG+I+AEMRK +GAYI I+ K
Sbjct: 387  VLRVQTRIARALPLPEGKEKAVIGRLLVSSNQIGCLLGKGGAIMAEMRKSTGAYIRILGK 446

Query: 242  DQIPKCASENEEVMQIQGEFESVQEALLQITSRLRHHLLFGDTFPSINHPVHPAFHDQVP 421
            DQIPKCASENEEV+QI GE E VQEALLQIT+RLR+H  F D FPSI+HP +PAF DQ P
Sbjct: 447  DQIPKCASENEEVVQINGEHEVVQEALLQITTRLRNH-FFRDVFPSIDHPSNPAFLDQAP 505

Query: 422  PF-PYMGRRQPSPP----GMYSGLGGLPPLGRIHPQDDRSAFMHNIHRQGISHNSGRISS 586
            PF PYMGRR+ SPP      + G+GG PP    HP DD S FMHNIHR G+  +  R   
Sbjct: 506  PFPPYMGRRELSPPFHAFHSFDGMGGPPPPVGFHPHDDHSPFMHNIHRPGMPPHFER--- 562

Query: 587  SARWEPQGITEAGRPLGILEYAEGTPQRRLXXXXXXXSQPAXXXXXXXXXXXPRAIVPSI 766
               W PQG+ EAG P+G+ E+  G PQRR+       + PA           PR++VP I
Sbjct: 563  -KPWGPQGLMEAGGPMGLPEFG-GHPQRRI-SGFGGVNHPAIITSTTVEVVVPRSVVPVI 619

Query: 767  YGEDGSSLKQIRQISGAKITITDPKPGATETVILINGTHEQAHAAQSLLQAFVLSGSDS 943
            YGEDG+ LKQIRQIS AKIT+T+PKPGA ETVI+I+GT EQ HAAQSL+QAFV+S  +S
Sbjct: 620  YGEDGACLKQIRQISDAKITVTEPKPGAAETVIIISGTPEQTHAAQSLIQAFVMSERES 678



 Score = 40.0 bits (92), Expect(2) = 7e-92
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   DIKILEGVPDSEDRIIVISGPA 68
           +IK+LEGV DSEDRII+ISGPA
Sbjct: 353 EIKVLEGVSDSEDRIILISGPA 374



 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 14/147 (9%)
 Frame = +2

Query: 134 RLLVSTIQIGCLLGKGGSIIAEMRKLSGAYIFIVPKDQIPKCASENEEVMQIQGEFESVQ 313
           RLLV + Q+GCLLGKGGS+I +M   SGA I I+P+D++P CAS  +E++QI GE ++++
Sbjct: 182 RLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPICASPTDELVQIAGEVDAIR 241

Query: 314 EALLQITSRLRHH----------LLFGDTFPSINHPVHPAFHDQVPPFPYMGRRQPS--- 454
           +AL  +  +L  +          +  G +  S  HP+ P      PP+     R  +   
Sbjct: 242 KALQSVAQQLLENPPKDPEAYPPISTGPSSHSFGHPL-PRPEAYPPPYHSFNARGTTYGA 300

Query: 455 -PPGMYSGLGGLPPLGRIHPQDDRSAF 532
            P   +   GG+P  GR+ P  D   F
Sbjct: 301 GPREFHE--GGMP--GRMRPAPDMLTF 323


>ref|XP_002302373.1| predicted protein [Populus trichocarpa] gi|222844099|gb|EEE81646.1|
            predicted protein [Populus trichocarpa]
          Length = 680

 Score =  303 bits (775), Expect(2) = 2e-84
 Identities = 171/297 (57%), Positives = 208/297 (70%), Gaps = 5/297 (1%)
 Frame = +2

Query: 68   VLRVQGRIARGTPDINEKIVISRLLVSTIQIGCLLGKGGSIIAEMRKLSGAYIFIVPKDQ 247
            V+RVQ RIA    +  EK +I+RLLVS+ QIGCLLGKGG+I++EMRK SGAYI I+ KDQ
Sbjct: 390  VIRVQTRIAMAISN-KEKAIIARLLVSSNQIGCLLGKGGAIMSEMRKSSGAYIRILGKDQ 448

Query: 248  IPKCASENEEVMQIQGEFESVQEALLQITSRLRHHLLFGDTFPSINHPVHPAFHDQVPPF 427
            IP CASE+E V+QI GEFE V+EALLQIT+RLRHH  F + FPS++H  +PAF DQVPPF
Sbjct: 449  IPNCASESEGVVQINGEFEVVKEALLQITTRLRHH-FFQNLFPSMDHLSNPAFLDQVPPF 507

Query: 428  -PYMGRRQPSPP----GMYSGLGGLPPLGRIHPQDDRSAFMHNIHRQGISHNSGRISSSA 592
             PYMGR++ SPP      + G+ G PP     P DD   FMHNIHR G+  +   I+   
Sbjct: 508  PPYMGRKELSPPFHSFPNFDGMVGAPPHVSFPPHDDHPPFMHNIHRPGMPPH---IAERK 564

Query: 593  RWEPQGITEAGRPLGILEYAEGTPQRRLXXXXXXXSQPAXXXXXXXXXXXPRAIVPSIYG 772
             W PQG  E G P+G+ ++A G PQRR+       S PA           PR IVP IYG
Sbjct: 565  PWGPQGFVEGGGPMGLPDFA-GPPQRRI-SGFGGVSHPAIITSTTIEVIVPRTIVPVIYG 622

Query: 773  EDGSSLKQIRQISGAKITITDPKPGATETVILINGTHEQAHAAQSLLQAFVLSGSDS 943
            EDG+ LKQIRQIS AKITI +PKPGA+ETVI+I+GT EQ HAAQSL+QAFV+S  +S
Sbjct: 623  EDGACLKQIRQISDAKITINEPKPGASETVIIISGTPEQTHAAQSLIQAFVMSERES 679



 Score = 37.7 bits (86), Expect(2) = 2e-84
 Identities = 17/22 (77%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   DIKILEGVPDSEDRIIVISGPA 68
           DIK++EGV DSEDR+IVISG A
Sbjct: 356 DIKVMEGVSDSEDRVIVISGLA 377



 Score = 77.8 bits (190), Expect = 5e-12
 Identities = 47/119 (39%), Positives = 71/119 (59%), Gaps = 7/119 (5%)
 Frame = +2

Query: 128 ISRLLVSTIQIGCLLGKGGSIIAEMRKLSGAYIFIVPKDQIPKCASENEEVMQIQGEFES 307
           I RLLV + Q+GCLLGKGGS+I +M   SGA I I P+D++P C+S ++E+++I GE ++
Sbjct: 184 ILRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRISPRDRLPICSSVSDELVEITGEIDA 243

Query: 308 VQEALLQITSRL-----RHHLLFGDTFPS--INHPVHPAFHDQVPPFPYMGRRQPSPPG 463
           V++AL  ++ +L     R H    D+FP+       H + H    P  Y+ R   S  G
Sbjct: 244 VRKALQSVSKQLLENPPRDH----DSFPANPSGTSSHSSGHSHPRPEAYLQRHSFSGRG 298


>ref|XP_003522728.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max]
          Length = 678

 Score =  304 bits (779), Expect(2) = 2e-84
 Identities = 167/299 (55%), Positives = 207/299 (69%), Gaps = 1/299 (0%)
 Frame = +2

Query: 50   SHIWSCVLRVQGRIARGTPDINEKIVISRLLVSTIQIGCLLGKGGSIIAEMRKLSGAYIF 229
            S +   V RVQ RIA+  PD N+  +++R LVS+ QIGCLLGKGGSII EMRK SGA+I 
Sbjct: 387  SPVQEAVFRVQTRIAKPIPDANDHTMLARFLVSSNQIGCLLGKGGSIITEMRKKSGAHIR 446

Query: 230  IVPKDQIPKCASENEEVMQIQGEFESVQEALLQITSRLRHHLLFGDTFPSINHPVHPAFH 409
            I+ KD++PKCASE+EEV+Q+ GE E+V EALLQIT+RL+HH  F D++PS+N+P +  F 
Sbjct: 447  ILGKDKVPKCASEDEEVIQVNGEIEAVHEALLQITTRLKHH-FFRDSYPSVNYPSNSPFL 505

Query: 410  DQVPPF-PYMGRRQPSPPGMYSGLGGLPPLGRIHPQDDRSAFMHNIHRQGISHNSGRISS 586
            DQ+PPF PY+GRR  SPPGMYS LG  PP     P DDR AF++NIHR G+  +   IS 
Sbjct: 506  DQLPPFPPYLGRRGLSPPGMYSDLGP-PPSHAGFPLDDRPAFLNNIHRPGLPPH---ISQ 561

Query: 587  SARWEPQGITEAGRPLGILEYAEGTPQRRLXXXXXXXSQPAXXXXXXXXXXXPRAIVPSI 766
               W P G+ E G P+G+ ++  G P+R         SQP            PRA+VP I
Sbjct: 562  RKPWGPLGVLEGGTPIGLPDFPRGPPRR--ISGFAGGSQP-IITSTTVEVVVPRAVVPVI 618

Query: 767  YGEDGSSLKQIRQISGAKITITDPKPGATETVILINGTHEQAHAAQSLLQAFVLSGSDS 943
            YGEDG  LKQI QIS A ITITDPKPGA ET I+I+GT EQ HAAQSL+QAFV+S  +S
Sbjct: 619  YGEDGECLKQILQISDANITITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMSERES 677



 Score = 36.2 bits (82), Expect(2) = 2e-84
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = +3

Query: 3   DIKILEGVPDSEDRIIVISGPA 68
           +IK+LE  PDSED +IVISGPA
Sbjct: 359 EIKVLEAPPDSEDCVIVISGPA 380



 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 8/106 (7%)
 Frame = +2

Query: 50  SHIWSCVLRVQGRIARGTPDINE--------KIVISRLLVSTIQIGCLLGKGGSIIAEMR 205
           S IW  +  V  R+  G  +  E             RLL+ T Q+GC+LGKGGS+I  M 
Sbjct: 146 SAIWKAISLVFERMVEGVEETTEGDEESNKSSSFFLRLLILTAQVGCVLGKGGSVIKRMA 205

Query: 206 KLSGAYIFIVPKDQIPKCASENEEVMQIQGEFESVQEALLQITSRL 343
             SGA I I+PKD++P CAS  +E++QI G  E V++AL  ++ +L
Sbjct: 206 AESGAQIRILPKDKVPVCASAFDEIVQISGSVEVVRKALQSVSQQL 251