BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00012660
         (515 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat...   152   4e-35
emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]   148   5e-34
ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|2...   137   7e-31
ref|XP_002534039.1| pentatricopeptide repeat-containing protein,...   135   3e-30
tpg|DAA44148.1| TPA: hypothetical protein ZEAMMB73_616668 [Zea m...   124   6e-27

>ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
           gi|296085293|emb|CBI29025.3| unnamed protein product
           [Vitis vinifera]
          Length = 854

 Score =  152 bits (383), Expect = 4e-35
 Identities = 83/170 (48%), Positives = 109/170 (64%)
 Frame = +3

Query: 3   LCKTKEVDKALYLYTEMKRFGIFPDAYVFKNLILSFCAEGNLVTVNKXXXXXXXXXXXXA 182
           LC  KE++KAL+L +EMK  GI PD  +   LI ++C+E   V + +            A
Sbjct: 348 LCAKKEIEKALHLLSEMKELGIDPDIQILSKLI-AYCSEE--VDIYRLIEERLEDLDTEA 404

Query: 183 MVLLYNAVLDGLVTKGLEDEAYLLVRAMMGIECVSEGVIGDLFRVKEKVTPNYASFSVVI 362
           M+LLYN+VL+GLV     D+AY L+RAM G        +   F VKE V P+  SFS+VI
Sbjct: 405 MLLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVI 464

Query: 363 DGLCKTAKLDEALILFRDMIHIGCERNVLLYNNVINSLCDSNRLEESFEL 512
           DGLC T KLD AL LFRDM+ +GC++NVLLYNN+I+ L +SNRLEE + L
Sbjct: 465 DGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLL 514



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 42/157 (26%), Positives = 72/157 (45%)
 Frame = +3

Query: 9    KTKEVDKALYLYTEMKRFGIFPDAYVFKNLILSFCAEGNLVTVNKXXXXXXXXXXXXAMV 188
            K K VD+AL ++ ++   G  PD   +  LI  FC    +   +             ++V
Sbjct: 609  KIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVV 668

Query: 189  LLYNAVLDGLVTKGLEDEAYLLVRAMMGIECVSEGVIGDLFRVKEKVTPNYASFSVVIDG 368
              YN ++DG    G  D+A+  +  M+G               KE+  PN  +++ +IDG
Sbjct: 669  T-YNLLIDGWCKNGDIDQAFHCLSRMVG---------------KER-EPNVITYTTLIDG 711

Query: 369  LCKTAKLDEALILFRDMIHIGCERNVLLYNNVINSLC 479
            LC   + D+A+ L+ +M   GC  N + +  +I+ LC
Sbjct: 712  LCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLC 748


>emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  148 bits (373), Expect = 5e-34
 Identities = 82/170 (48%), Positives = 106/170 (62%)
 Frame = +3

Query: 3   LCKTKEVDKALYLYTEMKRFGIFPDAYVFKNLILSFCAEGNLVTVNKXXXXXXXXXXXXA 182
           LC  KE++KAL+L +EMK  GI PD  +   LI  +C+E   V + +            A
Sbjct: 308 LCAKKEIEKALHLLSEMKELGIDPDIQILSKLI-PYCSEE--VDIYRLIEERLEDLDTEA 364

Query: 183 MVLLYNAVLDGLVTKGLEDEAYLLVRAMMGIECVSEGVIGDLFRVKEKVTPNYASFSVVI 362
           M+LLYN+VL+GLV     D+AY L+ AM G        +   F VKE V P   SFS+VI
Sbjct: 365 MLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFMVKEMVRPXTTSFSIVI 424

Query: 363 DGLCKTAKLDEALILFRDMIHIGCERNVLLYNNVINSLCDSNRLEESFEL 512
           DGLC T KLD AL LFRDM+ +GC++NVLLYNN+I+ L +SNRLEE + L
Sbjct: 425 DGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLL 474



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 42/157 (26%), Positives = 72/157 (45%)
 Frame = +3

Query: 9   KTKEVDKALYLYTEMKRFGIFPDAYVFKNLILSFCAEGNLVTVNKXXXXXXXXXXXXAMV 188
           K K VD+AL ++ ++   G  PD   +  LI  FC    +   +             ++V
Sbjct: 569 KIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVV 628

Query: 189 LLYNAVLDGLVTKGLEDEAYLLVRAMMGIECVSEGVIGDLFRVKEKVTPNYASFSVVIDG 368
             YN ++DG    G  D+A+  +  M+G               KE+  PN  +++ +IDG
Sbjct: 629 T-YNLLIDGWCKNGDIDQAFHCLSRMVG---------------KER-EPNVITYTTLIDG 671

Query: 369 LCKTAKLDEALILFRDMIHIGCERNVLLYNNVINSLC 479
           LC   + D+A+ L+ +M   GC  N + +  +I+ LC
Sbjct: 672 LCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLC 708


>ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|222856609|gb|EEE94156.1|
           predicted protein [Populus trichocarpa]
          Length = 726

 Score =  137 bits (346), Expect = 7e-31
 Identities = 80/167 (47%), Positives = 102/167 (61%)
 Frame = +3

Query: 3   LCKTKEVDKALYLYTEMKRFGIFPDAYVFKNLILSFCAEGNLVTVNKXXXXXXXXXXXXA 182
           LC  K+V KAL LY+EMK F I PD  +   LI SF  E  L    +            A
Sbjct: 215 LCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDMDPK---A 271

Query: 183 MVLLYNAVLDGLVTKGLEDEAYLLVRAMMGIECVSEGVIGDLFRVKEKVTPNYASFSVVI 362
             LLYN+VL+ LV  G   +AY L++A+    C+ +G IG LFR K  V PN  +FS+VI
Sbjct: 272 STLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVI 331

Query: 363 DGLCKTAKLDEALILFRDMIHIGCERNVLLYNNVINSLCDSNRLEES 503
           +GL KT  LD A+ LFRDM  IGC+ ++LLYNN+I+ LC SNRL+ES
Sbjct: 332 NGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQES 378



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 20/190 (10%)
 Frame = +3

Query: 3   LCKTKEVDKALYLYTEMKRFGIFPDAYVFKNLILSFCAEGNLVTVNKXXXXXXXXXXXXA 182
           LC+  ++  AL+L  +M+  G  P      +L+   C  G  V   K             
Sbjct: 404 LCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPD 463

Query: 183 MVLLYNAVLDGLVTKGLEDEAY-------------------LLVRAMMGIECVSEGVIGD 305
           +V  Y+A LDGL+     D+A                    +L++ +   + ++E     
Sbjct: 464 IVA-YSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQ-NL 521

Query: 306 LFRVKEK-VTPNYASFSVVIDGLCKTAKLDEALILFRDMIHIGCERNVLLYNNVINSLCD 482
           L  ++EK + P+  +++ +IDGLCKT  L+EA++    MI    E NV+ Y+ +IN LC+
Sbjct: 522 LHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCN 581

Query: 483 SNRLEESFEL 512
           + R +++  L
Sbjct: 582 AGRPDDALVL 591



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 43/167 (25%), Positives = 73/167 (43%)
 Frame = +3

Query: 3   LCKTKEVDKALYLYTEMKRFGIFPDAYVFKNLILSFCAEGNLVTVNKXXXXXXXXXXXXA 182
           L K +EVD+AL L+ ++   G  PD   +  LI   C    +                 +
Sbjct: 474 LIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPS 533

Query: 183 MVLLYNAVLDGLVTKGLEDEAYLLVRAMMGIECVSEGVIGDLFRVKEKVTPNYASFSVVI 362
            V  YN ++DGL      +EA L +  M                ++++  PN  ++S +I
Sbjct: 534 AVT-YNTLIDGLCKTDHLEEAMLFLSMM----------------IEKEREPNVITYSTLI 576

Query: 363 DGLCKTAKLDEALILFRDMIHIGCERNVLLYNNVINSLCDSNRLEES 503
           +GLC   + D+AL+L+ +M   GC  + + Y   I+ L +  R  E+
Sbjct: 577 NGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEA 623


>ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525946|gb|EEF28343.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 634

 Score =  135 bits (340), Expect = 3e-30
 Identities = 82/169 (48%), Positives = 104/169 (61%)
 Frame = +3

Query: 6   CKTKEVDKALYLYTEMKRFGIFPDAYVFKNLILSFCAEGNLVTVNKXXXXXXXXXXXXAM 185
           C  K++DKAL LY EMK   I PD  V   LI SF  EG L+ + +              
Sbjct: 125 CSNKKLDKALSLYAEMKMLKIQPDIGVVSKLISSFPEEGKLIDILEETLEDMNIE---TQ 181

Query: 186 VLLYNAVLDGLVTKGLEDEAYLLVRAMMGIECVSEGVIGDLFRVKEKVTPNYASFSVVID 365
            LL N+VL  LV  GL D+A  L+R MMG     + V   LFR  EK+ PN ASFS+VI+
Sbjct: 182 TLLCNSVLSSLVNSGLIDKACCLLRNMMG-NGDDDDVQYKLFR-DEKIRPNTASFSIVIN 239

Query: 366 GLCKTAKLDEALILFRDMIHIGCERNVLLYNNVINSLCDSNRLEESFEL 512
           GL +  KLD A+ LF+DM  IGC R++LLYNN+IN LC+S+RLEES++L
Sbjct: 240 GLMQACKLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLEESYKL 288



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 42/165 (25%), Positives = 76/165 (46%)
 Frame = +3

Query: 3   LCKTKEVDKALYLYTEMKRFGIFPDAYVFKNLILSFCAEGNLVTVNKXXXXXXXXXXXXA 182
           L + +EVD+AL L+ ++   G  PD   + N+++    E +     +             
Sbjct: 381 LIEVQEVDQALKLFKDISARGRCPDVIAY-NILMKGLYEAHRTEEARNLFNEMVMKGLIP 439

Query: 183 MVLLYNAVLDGLVTKGLEDEAYLLVRAMMGIECVSEGVIGDLFRVKEKVTPNYASFSVVI 362
            V+ YN ++DG    G  D+A   + +M                 KE+  PN  +++ +I
Sbjct: 440 SVVTYNLLIDGWCKNGCIDDAMNCLCSMSA---------------KER-EPNVFTYTTLI 483

Query: 363 DGLCKTAKLDEALILFRDMIHIGCERNVLLYNNVINSLCDSNRLE 497
           DGLCK  + D+A++L+ +M   GC  N + +   I+ LC  ++ E
Sbjct: 484 DGLCKAGRPDDAVMLWNEMRRRGCRPNRVAFMGFIHGLCKCDKPE 528


>tpg|DAA44148.1| TPA: hypothetical protein ZEAMMB73_616668 [Zea mays]
          Length = 838

 Score =  124 bits (312), Expect = 6e-27
 Identities = 68/173 (39%), Positives = 107/173 (61%), Gaps = 3/173 (1%)
 Frame = +3

Query: 3   LCKTKEVDKALYLYTEMKRFGIFPDAYVFKNLILSFCAEGNLVTVNKXXXXXXXXXXXXA 182
           LC   E+ KA+ L+ +MKR  I PD  + K +I +FC +G+  TV              +
Sbjct: 322 LCHGNEMGKAVKLFEDMKRDRITPDVRLLKKIIEAFCRQGDFSTVGPFINENAVHLKPGS 381

Query: 183 MVLLYNAVLDGLVTKGLEDEAYLLVRAMM-GIECVSEG-VIG-DLFRVKEKVTPNYASFS 353
            VLLYN +LDGL+  G  + AY L+ +M+ G + VS+   +G  +F + E V PN  SF+
Sbjct: 382 AVLLYNVILDGLINHGEVEAAYQLLSSMVRGDQRVSDDDTVGVHIFVITEDVKPNSDSFN 441

Query: 354 VVIDGLCKTAKLDEALILFRDMIHIGCERNVLLYNNVINSLCDSNRLEESFEL 512
           +V+ GLCK  KLD AL L +DM+ +GC+  +L++N++I  LC+S +L+E++E+
Sbjct: 442 IVVCGLCKVKKLDLALALTKDMVGLGCKGKLLMFNDLILELCNSGKLDEAYEI 494



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 40/165 (24%), Positives = 68/165 (41%)
 Frame = +3

Query: 3    LCKTKEVDKALYLYTEMKRFGIFPDAYVFKNLILSFCAEGNLVTVNKXXXXXXXXXXXXA 182
            +CK  +++ AL L+ ++      PD      LI  F   G      +            +
Sbjct: 587  MCKVGDIENALGLFLDISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEEMLSKGMLPS 646

Query: 183  MVLLYNAVLDGLVTKGLEDEAYLLVRAMMGIECVSEGVIGDLFRVKEKVTPNYASFSVVI 362
            +V  YN ++D     G  D+A   V  M                + E+  P   +++ ++
Sbjct: 647  VVT-YNLMIDIWCKSGSIDKAITCVYKM----------------IDEEKPPTVVTYTSLL 689

Query: 363  DGLCKTAKLDEALILFRDMIHIGCERNVLLYNNVINSLCDSNRLE 497
            DGLC   + DEA++L+  M   GC  N + Y  ++N LC   R+E
Sbjct: 690  DGLCNAGRPDEAIVLWCKMREKGCSPNGIAYTALVNGLCKCGRME 734