BLASTX nr result

ID: Cimicifuga21_contig00012640 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00012640
         (239 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510601.1| tetracycline transporter, putative [Ricinus ...   110   2e-22
ref|XP_002305536.1| predicted protein [Populus trichocarpa] gi|2...   108   6e-22
ref|XP_002280708.1| PREDICTED: hippocampus abundant transcript 1...   107   8e-22
emb|CAN70291.1| hypothetical protein VITISV_019346 [Vitis vinifera]   107   8e-22
ref|XP_002284761.1| PREDICTED: hippocampus abundant transcript 1...   106   2e-21

>ref|XP_002510601.1| tetracycline transporter, putative [Ricinus communis]
           gi|223551302|gb|EEF52788.1| tetracycline transporter,
           putative [Ricinus communis]
          Length = 442

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/65 (76%), Positives = 59/65 (90%)
 Frame = +1

Query: 1   DVTMFAICPGEDECSLAIYLSGFHQAVTGLGSLVMMPVIGNLSDVYGRKALLTLPMALTV 180
           DVTM A+CPG DECSLAIYL+GF QA+ GLG+LVMMP++GNLSD YGRKALLT+PM+LTV
Sbjct: 30  DVTMSALCPGRDECSLAIYLTGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTIPMSLTV 89

Query: 181 VPLCT 195
           +PL T
Sbjct: 90  IPLAT 94


>ref|XP_002305536.1| predicted protein [Populus trichocarpa] gi|222848500|gb|EEE86047.1|
           predicted protein [Populus trichocarpa]
          Length = 402

 Score =  108 bits (269), Expect = 6e-22
 Identities = 49/63 (77%), Positives = 58/63 (92%)
 Frame = +1

Query: 1   DVTMFAICPGEDECSLAIYLSGFHQAVTGLGSLVMMPVIGNLSDVYGRKALLTLPMALTV 180
           DVTM A+CPG+DECSLAIYLSGF QA+ GLG++VMMP+IGNLSD YGRKALLTLPM L++
Sbjct: 28  DVTMVAVCPGKDECSLAIYLSGFQQAIIGLGTVVMMPLIGNLSDQYGRKALLTLPMTLSI 87

Query: 181 VPL 189
           +PL
Sbjct: 88  IPL 90


>ref|XP_002280708.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis
           vinifera] gi|297744560|emb|CBI37822.3| unnamed protein
           product [Vitis vinifera]
          Length = 439

 Score =  107 bits (268), Expect = 8e-22
 Identities = 51/75 (68%), Positives = 62/75 (82%)
 Frame = +1

Query: 1   DVTMFAICPGEDECSLAIYLSGFHQAVTGLGSLVMMPVIGNLSDVYGRKALLTLPMALTV 180
           DVTM A+CPG+DECSLAIYLSGF QA+ GLG++VM PVIGNLSD YGRKALLT+PMAL++
Sbjct: 30  DVTMSALCPGKDECSLAIYLSGFQQAIIGLGTVVMTPVIGNLSDEYGRKALLTIPMALSI 89

Query: 181 VPLCT*NSLKQTVAF 225
           +PL      + T +F
Sbjct: 90  IPLAILAYSRTTTSF 104


>emb|CAN70291.1| hypothetical protein VITISV_019346 [Vitis vinifera]
          Length = 494

 Score =  107 bits (268), Expect = 8e-22
 Identities = 51/75 (68%), Positives = 62/75 (82%)
 Frame = +1

Query: 1   DVTMFAICPGEDECSLAIYLSGFHQAVTGLGSLVMMPVIGNLSDVYGRKALLTLPMALTV 180
           DVTM A+CPG+DECSLAIYLSGF QA+ GLG++VM PVIGNLSD YGRKALLT+PMAL++
Sbjct: 30  DVTMSALCPGKDECSLAIYLSGFQQAIIGLGTVVMTPVIGNLSDEYGRKALLTIPMALSI 89

Query: 181 VPLCT*NSLKQTVAF 225
           +PL      + T +F
Sbjct: 90  IPLAILAYSRTTTSF 104


>ref|XP_002284761.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis
           vinifera] gi|302141709|emb|CBI18912.3| unnamed protein
           product [Vitis vinifera]
          Length = 442

 Score =  106 bits (264), Expect = 2e-21
 Identities = 46/63 (73%), Positives = 57/63 (90%)
 Frame = +1

Query: 1   DVTMFAICPGEDECSLAIYLSGFHQAVTGLGSLVMMPVIGNLSDVYGRKALLTLPMALTV 180
           DVTM A+CPG DECS+AIYL+GF Q + GLG+LVMMP++GNLSD+YGRKALLT+PM LT+
Sbjct: 30  DVTMAALCPGRDECSIAIYLTGFQQVIIGLGTLVMMPLVGNLSDMYGRKALLTIPMCLTI 89

Query: 181 VPL 189
           +PL
Sbjct: 90  IPL 92


Top