BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00012428
         (1864 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279464.2| PREDICTED: DNA repair protein recA homolog 3...   553   e-155
ref|XP_002308284.1| predicted protein [Populus trichocarpa] gi|2...   532   e-148
ref|NP_179539.2| DNA repair protein recA-like 3 [Arabidopsis tha...   518   e-144
ref|XP_003564854.1| PREDICTED: DNA repair protein recA homolog 3...   514   e-143
ref|XP_003595205.1| RecA [Medicago truncatula] gi|355484253|gb|A...   509   e-141

>ref|XP_002279464.2| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like
            [Vitis vinifera] gi|297738654|emb|CBI27899.3| unnamed
            protein product [Vitis vinifera]
          Length = 421

 Score =  553 bits (1426), Expect = e-155
 Identities = 298/422 (70%), Positives = 332/422 (78%), Gaps = 2/422 (0%)
 Frame = -2

Query: 1623 MARLLRNALVLKQSLSSAEVCRHRILGTSSQICNFXXXXXXXXXXXXXXXXXENLSKKDL 1444
            MARLLRNA  L+ SL + E  R  +LGTSSQ CNF                 ENLSKK+L
Sbjct: 1    MARLLRNASSLRHSLFAVEGFRKGVLGTSSQFCNFSSKGRRRSKSDGSDSNEENLSKKEL 60

Query: 1443 ALQQALDQITTSFGKGAIMWLGRSASPRNVPVVSTGSFSLDLALGIGGLPKGRVVEIYGP 1264
            AL+QALDQITTSFGKG+IMWLGRS S ++VPVVSTGSF+LD+ LGIGGLPKGRVVEIYGP
Sbjct: 61   ALRQALDQITTSFGKGSIMWLGRSVSSKHVPVVSTGSFALDIVLGIGGLPKGRVVEIYGP 120

Query: 1263 EASGKTTLALHVIAESQKHGGYCVFVDAEHALDPALAEAIGVKTENLLLSQPDSGEQALS 1084
            EASGKTTLALHVIAE+QK GGYCVFVDAEHALDPALAEAIGV T+NLLLSQPD GEQALS
Sbjct: 121  EASGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAEAIGVNTQNLLLSQPDCGEQALS 180

Query: 1083 LVDTLIRSGXXXXXXXXXXXALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 904
            LVDTLIRSG           ALVPKGEL+GEMGDAHMAMQARLMSQALRKLSHSLSLSQT
Sbjct: 181  LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 240

Query: 903  ILIFTNQIRSKLSTF-GFGGLTEVTSGGNALKFYASVRLNVRRIGLVKKGEETVGSQVSV 727
            ILIF NQ+R+KLSTF GFGG TEVT GGNALKFYASVRLN++RIGLVKKGEET+GSQV V
Sbjct: 241  ILIFINQVRAKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQVLV 300

Query: 726  KIVKNKHAPPFKTAQFELEFGKGISRESEIIELGIKHKFVLKGGGSYYKFNDQNFHGKDA 547
            K+VKNKHAPPFKTAQFELEFGKGI RESEI+ELG KHKF++KGGG+ Y +N Q+F GKDA
Sbjct: 301  KVVKNKHAPPFKTAQFELEFGKGICRESEIVELGCKHKFIIKGGGAMYSYNGQSFRGKDA 360

Query: 546  LKNFLVGNXXXXXXXXXXXXXXLI-HTEKVKESDTETSEDDPKVEIVSPDAPEEDTIAAL 370
            +K FL  N              L+  T K KE + E  ++D     V PD  +E+ + A+
Sbjct: 361  IKQFLSQNESEREELMRKLREKLVGETNKEKELEAEAVDEDIAEGTVPPDTTDEE-VTAV 419

Query: 369  EA 364
            EA
Sbjct: 420  EA 421


>ref|XP_002308284.1| predicted protein [Populus trichocarpa] gi|222854260|gb|EEE91807.1|
            predicted protein [Populus trichocarpa]
          Length = 418

 Score =  532 bits (1371), Expect = e-148
 Identities = 281/417 (67%), Positives = 323/417 (77%)
 Frame = -2

Query: 1623 MARLLRNALVLKQSLSSAEVCRHRILGTSSQICNFXXXXXXXXXXXXXXXXXENLSKKDL 1444
            MARLLRNA  L+++L + E  R  +LGTS+QICNF                 EN+SKK+L
Sbjct: 1    MARLLRNASSLRRALVAPEGIRRGVLGTSTQICNFATKGKRKSKSDGSESGEENMSKKEL 60

Query: 1443 ALQQALDQITTSFGKGAIMWLGRSASPRNVPVVSTGSFSLDLALGIGGLPKGRVVEIYGP 1264
            ALQQALDQIT+ FGKGAIMW GRS +P+NVPVVSTGSF+LD+ALG GG PKGRVVEI+GP
Sbjct: 61   ALQQALDQITSQFGKGAIMWFGRSEAPKNVPVVSTGSFALDIALGCGGFPKGRVVEIFGP 120

Query: 1263 EASGKTTLALHVIAESQKHGGYCVFVDAEHALDPALAEAIGVKTENLLLSQPDSGEQALS 1084
            EASGKTTLALHVIAE+QK GGYCVFVDAEHALD +LA+AIGV TENLLLSQPD GEQALS
Sbjct: 121  EASGKTTLALHVIAEAQKQGGYCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALS 180

Query: 1083 LVDTLIRSGXXXXXXXXXXXALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 904
            LVDTLIRSG           ALVPK EL+GEMGDAHMAMQARLMSQALRKLSHSLS SQT
Sbjct: 181  LVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRKLSHSLSQSQT 240

Query: 903  ILIFTNQIRSKLSTFGFGGLTEVTSGGNALKFYASVRLNVRRIGLVKKGEETVGSQVSVK 724
            IL+F NQ+R+KLSTFGFGG TEVT GGNALKFYASVRLN+RR+G +KKGEET G+QV VK
Sbjct: 241  ILVFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGEETTGTQVQVK 300

Query: 723  IVKNKHAPPFKTAQFELEFGKGISRESEIIELGIKHKFVLKGGGSYYKFNDQNFHGKDAL 544
            IVKNK APPFKT QFELEFGKGISRESEIIEL +KHK ++K  GS+Y  N + +HGK+A 
Sbjct: 301  IVKNKLAPPFKTVQFELEFGKGISRESEIIELALKHK-LIKKSGSFYDCNGKKYHGKEAF 359

Query: 543  KNFLVGNXXXXXXXXXXXXXXLIHTEKVKESDTETSEDDPKVEIVSPDAPEEDTIAA 373
            K FL  N              L+  E  +E   E+++ +P  EI+SPD+ +E+  AA
Sbjct: 360  KEFLAHNDDVQEELMMKLREKLLEGETGQELGDESTDGEPTQEIISPDSTDEEVAAA 416


>ref|NP_179539.2| DNA repair protein recA-like 3 [Arabidopsis thaliana]
            gi|209572665|sp|Q9ZUP2.2|RECA3_ARATH RecName: Full=DNA
            repair protein recA homolog 3, mitochondrial; AltName:
            Full=Recombinase A homolog 3; Flags: Precursor
            gi|119935859|gb|ABM06015.1| At2g19490 [Arabidopsis
            thaliana] gi|330251794|gb|AEC06888.1| DNA repair protein
            recA-like 3 [Arabidopsis thaliana]
          Length = 430

 Score =  518 bits (1333), Expect = e-144
 Identities = 280/418 (66%), Positives = 326/418 (77%), Gaps = 2/418 (0%)
 Frame = -2

Query: 1623 MARLLRNALVLKQSLSSAEVCRHRILGTSSQICNFXXXXXXXXXXXXXXXXXENLSKKDL 1444
            MAR+LRN   L+ SL S+E+ R  ++GTS Q+  F                 E +SKK++
Sbjct: 1    MARILRNVYSLRSSLFSSELLRRSVVGTSFQLRGFAAKAKKKSKSDGNGSSEEGMSKKEI 60

Query: 1443 ALQQALDQITTSFGKGAIMWLGRSASPRNVPVVSTGSFSLDLALGIGGLPKGRVVEIYGP 1264
            ALQQALDQIT+SFGKG+IM+LGR+ SPRNVPV STGSF+LD+ALG+GGLPKGRVVEIYGP
Sbjct: 61   ALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRVVEIYGP 120

Query: 1263 EASGKTTLALHVIAESQKHGGYCVFVDAEHALDPALAEAIGVKTENLLLSQPDSGEQALS 1084
            EASGKTTLALHVIAE+QK GG CVFVDAEHALD +LA+AIGV TENLLLSQPD GEQALS
Sbjct: 121  EASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALS 180

Query: 1083 LVDTLIRSGXXXXXXXXXXXALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 904
            LVDTLIRSG           ALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQT
Sbjct: 181  LVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 240

Query: 903  ILIFTNQIRSKLSTF-GFGGLTEVTSGGNALKFYASVRLNVRRIGLVKKGEETVGSQVSV 727
            +LIF NQ+RSKLSTF GFGG TEVT GGNALKFYAS+RLN++RIGL+KKGEET GSQVSV
Sbjct: 241  LLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETTGSQVSV 300

Query: 726  KIVKNKHAPPFKTAQFELEFGKGISRESEIIELGIKHKFVLKGGGSYYKFNDQNFHGKDA 547
            KIVKNK APPF+TAQFELEFGKGI + +EII+L IKHKF+ K  G++Y  N +N+HGK+A
Sbjct: 301  KIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAK-NGTFYNLNGKNYHGKEA 359

Query: 546  LKNFLVGNXXXXXXXXXXXXXXLIHTEKV-KESDTETSEDDPKVEIVSPDAPEEDTIA 376
            LK FL  N              LI  E   KE+++E+ E+D    +VSPD  ++++ A
Sbjct: 360  LKRFLKQNESDQEELMKKLQDKLIADEAADKETESESEEEDSLRVVVSPDNTDDESPA 417


>ref|XP_003564854.1| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like
            [Brachypodium distachyon]
          Length = 429

 Score =  514 bits (1324), Expect = e-143
 Identities = 286/430 (66%), Positives = 325/430 (75%), Gaps = 10/430 (2%)
 Frame = -2

Query: 1623 MARLLRNALVLKQSLSSA-----EVCRHRILGTSSQICNFXXXXXXXXXXXXXXXXXENL 1459
            MA LLR A V +   + A     E  R  I G++    +F                 EN+
Sbjct: 1    MATLLRRASVRRAIAAVASSPCPESYRQVICGSTFHCRDFASKAKKKTKSSGTDSGEENM 60

Query: 1458 SKKDLALQQALDQITTSFGKGAIMWLGRSASPRNVPVVSTGSFSLDLALGIGGLPKGRVV 1279
            SKKDLAL QA+DQIT+SFGKGAIMWLGRS   R VPVVSTGSFSLDLALGIGGLPKGRVV
Sbjct: 61   SKKDLALHQAIDQITSSFGKGAIMWLGRSEGHREVPVVSTGSFSLDLALGIGGLPKGRVV 120

Query: 1278 EIYGPEASGKTTLALHVIAESQKHGG--YCVFVDAEHALDPALAEAIGVKTENLLLSQPD 1105
            E+YGPEASGKTTLALHVIAE+QKHGG  YC F+DAEHALDP+LAE+IGV T NLLLSQPD
Sbjct: 121  EVYGPEASGKTTLALHVIAEAQKHGGGGYCAFIDAEHALDPSLAESIGVDTSNLLLSQPD 180

Query: 1104 SGEQALSLVDTLIRSGXXXXXXXXXXXALVPKGELEGEMGDAHMAMQARLMSQALRKLSH 925
            S EQALSLVDTLIRSG           ALVPK EL+GEMGDAH+A+QARLMSQALRKLSH
Sbjct: 181  SAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALRKLSH 240

Query: 924  SLSLSQTILIFTNQIRSKLSTFG-FGGLTEVTSGGNALKFYASVRLNVRRIGLVKKGEET 748
            SLSLSQTIL+F NQIR+K+STFG FGG TEVTSGGNALKFYASVRLN+RR+GLVKKGEET
Sbjct: 241  SLSLSQTILLFINQIRAKVSTFGGFGGPTEVTSGGNALKFYASVRLNIRRVGLVKKGEET 300

Query: 747  VGSQVSVKIVKNKHAPPFKTAQFELEFGKGISRESEIIELGIKHKFVLKGGGSYYKFNDQ 568
            +GSQV+VKIVKNKHAPPF+TAQFELEFGKGISR SE++ELG+KHK V K GG+YY FN++
Sbjct: 301  IGSQVNVKIVKNKHAPPFRTAQFELEFGKGISRSSELVELGLKHKLVKKTGGAYYSFNEK 360

Query: 567  NFHGKDALKNFLVGNXXXXXXXXXXXXXXLIHTEK--VKESDTETSEDDPKVEIVSPDAP 394
             FHGKDALK+FL GN              LI TE    +E++ +   D P+  + S  + 
Sbjct: 361  AFHGKDALKSFLTGN-ESIAKELEMELRRLIETEAPIKQEAEDDLLSDLPEETVRSDTSS 419

Query: 393  EEDTIAALEA 364
            EED  A +EA
Sbjct: 420  EEDLAAVIEA 429


>ref|XP_003595205.1| RecA [Medicago truncatula] gi|355484253|gb|AES65456.1| RecA [Medicago
            truncatula]
          Length = 424

 Score =  509 bits (1310), Expect = e-141
 Identities = 276/426 (64%), Positives = 324/426 (76%), Gaps = 6/426 (1%)
 Frame = -2

Query: 1623 MARLLRNALVLKQS-----LSSAEVCRHRILGTSSQICNFXXXXXXXXXXXXXXXXXENL 1459
            MARLLR+   L +S     L +    ++ +LGTS  +                    EN+
Sbjct: 1    MARLLRSTFFLNRSFFHHHLPTRFCSKNGVLGTSQVLSFSTNKGKKRSKSDGSDSGEENM 60

Query: 1458 SKKDLALQQALDQITTSFGKGAIMWLGRSASPRNVPVVSTGSFSLDLALGIGGLPKGRVV 1279
            SKKDLALQQA+DQIT++FGKG+IMWLGR+ SP+NVPVVSTGSF+LD+ALGI GLPKGRVV
Sbjct: 61   SKKDLALQQAMDQITSTFGKGSIMWLGRTVSPKNVPVVSTGSFALDIALGIFGLPKGRVV 120

Query: 1278 EIYGPEASGKTTLALHVIAESQKHGGYCVFVDAEHALDPALAEAIGVKTENLLLSQPDSG 1099
            EI+GPEASGKTTLALHVIAE+QK GGYC F+DAEHALD +LAE+IGV TENLLLSQPD G
Sbjct: 121  EIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHALDKSLAESIGVNTENLLLSQPDCG 180

Query: 1098 EQALSLVDTLIRSGXXXXXXXXXXXALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSL 919
            EQALSLVDTLIRSG           ALVPKGEL+GEMGDAHMAMQARLMSQALRKL HSL
Sbjct: 181  EQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSL 240

Query: 918  SLSQTILIFTNQIRSKLSTF-GFGGLTEVTSGGNALKFYASVRLNVRRIGLVKKGEETVG 742
            SLSQ ILIF NQ+RSK+STF GFGG TEVT GGNALKFY+SVRLN++R+G VKKGEETVG
Sbjct: 241  SLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRVGFVKKGEETVG 300

Query: 741  SQVSVKIVKNKHAPPFKTAQFELEFGKGISRESEIIELGIKHKFVLKGGGSYYKFNDQNF 562
            SQV VK+VKNKHAPPFKTAQFELEFGKGI RE+EIIEL IKHKF+ K  GS+Y++N +N+
Sbjct: 301  SQVLVKVVKNKHAPPFKTAQFELEFGKGICREAEIIELSIKHKFI-KKSGSFYEYNGKNY 359

Query: 561  HGKDALKNFLVGNXXXXXXXXXXXXXXLIHTEKVKESDTETSEDDPKVEIVSPDAPEEDT 382
            HGKDALK+ L+ N              L++ E    S+++    D   E++SPD+ +E+T
Sbjct: 360  HGKDALKSHLI-NGDGLQDLTTKLREKLLNAETETVSESQEMVGDVTEEMLSPDSTDEET 418

Query: 381  IAALEA 364
                EA
Sbjct: 419  AVVAEA 424