BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00012410
         (1243 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN68579.1| hypothetical protein VITISV_034891 [Vitis vinifera]   399   e-108
ref|XP_002276856.1| PREDICTED: putative tRNA pseudouridine synth...   396   e-108
emb|CBI15850.3| unnamed protein product [Vitis vinifera]              385   e-104
ref|XP_003518334.1| PREDICTED: putative tRNA pseudouridine synth...   359   7e-97
ref|XP_003615971.1| Pseudouridylate synthase [Medicago truncatul...   358   2e-96

>emb|CAN68579.1| hypothetical protein VITISV_034891 [Vitis vinifera]
          Length = 602

 Score =  399 bits (1024), Expect = e-108
 Identities = 203/336 (60%), Positives = 250/336 (74%), Gaps = 5/336 (1%)
 Frame = +3

Query: 3    NFDARRECSVRKYSYLLPAEIIGIRNDISSTEIDHHLSEFNHILRSFEGEHPFHNYTIRS 182
            +FDARREC +R+YSYLLPAEIIGI+++ S++EIDHH++EFN IL +FEGEHPF NYTIRS
Sbjct: 178  SFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYTIRS 237

Query: 183  KYRKQPP----PGKSHIRRVRELPQEAPGXXXXXXXXXXXCGVDGEAVLDLT-GDGTCPS 347
            KYRKQ P    PG   + R  +   EA              GV+G    D   G+    S
Sbjct: 238  KYRKQFPAKQSPGNGGVFRRAKSSGEASTSEFEVSDGEENSGVNGVISSDYDEGENQNSS 297

Query: 348  NSNASNDHSVSTGEKHGGDVKDQISTLPVRARWLYEPDGRDRIGASHFRKIYFCSCGKLE 527
             S +  +H V +   +   +K+Q S L VRARWL+ PD RDRI ASHFRKI+ CSCGKLE
Sbjct: 298  ESTSFVEHPVGSSNNNEKGLKEQSSKLVVRARWLHGPDERDRISASHFRKIFNCSCGKLE 357

Query: 528  KSSGIDYIEISICGESFMLHQIRKMIGTAVAVKRKLLPEDLIEMSLIKFSRIVLPLAPSE 707
            K  G+DY+E+SICGESFMLHQIRKM+GTA+AVKR+LLP D++ +SL KFSRIVLPLAPSE
Sbjct: 358  KFLGLDYVELSICGESFMLHQIRKMVGTAIAVKRELLPRDILTLSLTKFSRIVLPLAPSE 417

Query: 708  VLILRGNQFSVRKHPGNITRPEVLKLVESEDVLKEVNEFYESVMLPQVSKFLDSSNHPWK 887
            VLILRGN FSVRK PGN+ RPE+L L+ESE++LK V+EFY SV+LPQVSKFLD S  PW 
Sbjct: 418  VLILRGNSFSVRKKPGNVKRPEMLTLMESEEILKSVDEFYTSVILPQVSKFLDPSKSPWH 477

Query: 888  EWVETLDANTSIPDEELEEVRRAWKSWKESFRIRTE 995
            +W+E L   +SIP+ EL++VR AWK WKE+FR RT+
Sbjct: 478  DWLENLTL-SSIPEAELDDVRTAWKLWKENFRSRTK 512


>ref|XP_002276856.1| PREDICTED: putative tRNA pseudouridine synthase-like [Vitis vinifera]
          Length = 564

 Score =  396 bits (1018), Expect = e-108
 Identities = 201/336 (59%), Positives = 249/336 (74%), Gaps = 5/336 (1%)
 Frame = +3

Query: 3    NFDARRECSVRKYSYLLPAEIIGIRNDISSTEIDHHLSEFNHILRSFEGEHPFHNYTIRS 182
            +FDARREC +R+YSYLLPAEIIGI+++ S++EIDHH++EFN IL +FEGEHPF NYTIRS
Sbjct: 178  SFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYTIRS 237

Query: 183  KYRKQPP----PGKSHIRRVRELPQEAPGXXXXXXXXXXXCGVDGEAVLDLT-GDGTCPS 347
            KYRKQ P    PG   + R  +   EA              G++G    D   G+    S
Sbjct: 238  KYRKQFPAKQSPGNGGVFRRAKSSGEASTSEFEVSDGEENSGINGVISSDYDEGENQNSS 297

Query: 348  NSNASNDHSVSTGEKHGGDVKDQISTLPVRARWLYEPDGRDRIGASHFRKIYFCSCGKLE 527
             S +  +H V +   +   +K+Q   L VRARWL+ PD RDRI ASHFRKI+ CSCGKLE
Sbjct: 298  ESTSFVEHPVGSSNNNEKGLKEQSPKLVVRARWLHGPDERDRISASHFRKIFNCSCGKLE 357

Query: 528  KSSGIDYIEISICGESFMLHQIRKMIGTAVAVKRKLLPEDLIEMSLIKFSRIVLPLAPSE 707
            K  G+DY+E+SICGESFMLHQIRKM+GTA+AVKR+LLP D++ +SL KFSRIVLPLAPSE
Sbjct: 358  KFLGLDYVELSICGESFMLHQIRKMVGTAIAVKRELLPRDILTLSLTKFSRIVLPLAPSE 417

Query: 708  VLILRGNQFSVRKHPGNITRPEVLKLVESEDVLKEVNEFYESVMLPQVSKFLDSSNHPWK 887
            VLILRGN FSVRK PGN+ RPE+L L+ESE++LK V+EFY SV+LPQVSKFLD S  PW 
Sbjct: 418  VLILRGNSFSVRKKPGNVKRPEMLTLMESEEILKSVDEFYTSVILPQVSKFLDPSKSPWH 477

Query: 888  EWVETLDANTSIPDEELEEVRRAWKSWKESFRIRTE 995
            +W+E L   +SIP+ EL++VR AWK WKE+FR RT+
Sbjct: 478  DWLENLTL-SSIPEAELDDVRTAWKLWKENFRSRTK 512


>emb|CBI15850.3| unnamed protein product [Vitis vinifera]
          Length = 495

 Score =  385 bits (988), Expect = e-104
 Identities = 198/337 (58%), Positives = 246/337 (72%), Gaps = 6/337 (1%)
 Frame = +3

Query: 3    NFDARRECSVRKYSYLLPAEIIGIRNDISSTEIDHHLSEFNHILRSFEGEHPFHNYTIRS 182
            +FDARREC +R+YSYLLPAEIIGI+++ S++EIDHH++EFN IL +FEGEHPF NYTIRS
Sbjct: 178  SFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYTIRS 237

Query: 183  KYRKQPPPGKSHIRRVRELPQEAPGXXXXXXXXXXXCGVDGEAVLDLT------GDGTCP 344
            KYRKQ P             +++PG            GV   A   +       G+    
Sbjct: 238  KYRKQFPA------------KQSPGNG----------GVFRRAKSSVISSDYDEGENQNS 275

Query: 345  SNSNASNDHSVSTGEKHGGDVKDQISTLPVRARWLYEPDGRDRIGASHFRKIYFCSCGKL 524
            S S +  +H V +   +   +K+Q   L VRARWL+ PD RDRI ASHFRKI+ CSCGKL
Sbjct: 276  SESTSFVEHPVGSSNNNEKGLKEQSPKLVVRARWLHGPDERDRISASHFRKIFNCSCGKL 335

Query: 525  EKSSGIDYIEISICGESFMLHQIRKMIGTAVAVKRKLLPEDLIEMSLIKFSRIVLPLAPS 704
            EK  G+DY+E+SICGESFMLHQIRKM+GTA+AVKR+LLP D++ +SL KFSRIVLPLAPS
Sbjct: 336  EKFLGLDYVELSICGESFMLHQIRKMVGTAIAVKRELLPRDILTLSLTKFSRIVLPLAPS 395

Query: 705  EVLILRGNQFSVRKHPGNITRPEVLKLVESEDVLKEVNEFYESVMLPQVSKFLDSSNHPW 884
            EVLILRGN FSVRK PGN+ RPE+L L+ESE++LK V+EFY SV+LPQVSKFLD S  PW
Sbjct: 396  EVLILRGNSFSVRKKPGNVKRPEMLTLMESEEILKSVDEFYTSVILPQVSKFLDPSKSPW 455

Query: 885  KEWVETLDANTSIPDEELEEVRRAWKSWKESFRIRTE 995
             +W+E L   +SIP+ EL++VR AWK WKE+FR RT+
Sbjct: 456  HDWLENLTL-SSIPEAELDDVRTAWKLWKENFRSRTK 491


>ref|XP_003518334.1| PREDICTED: putative tRNA pseudouridine synthase-like [Glycine max]
          Length = 516

 Score =  359 bits (922), Expect = 7e-97
 Identities = 190/336 (56%), Positives = 237/336 (70%), Gaps = 3/336 (0%)
 Frame = +3

Query: 6    FDARRECSVRKYSYLLPAEIIGIRNDISSTEIDHHLSEFNHILRSFEGEHPFHNYTIRSK 185
            FD RREC++RKYSYLLPA IIGI++  S  EID H+SEFN IL  FEGEHPFHNYT+RSK
Sbjct: 191  FDPRRECNLRKYSYLLPAGIIGIQSHFSQDEIDFHISEFNSILNVFEGEHPFHNYTVRSK 250

Query: 186  YRKQPPPGKSHIRRVRELPQEAPGXXXXXXXXXXXCGVDGEAVLD---LTGDGTCPSNSN 356
            YRK     K  +R  +    +              C  + E   D   ++G  T  S+  
Sbjct: 251  YRK-----KYQVR--QSSGNDVMSDRIGSSSLTSACESESEEGDDDDFVSGRPTTFSDKE 303

Query: 357  ASNDHSVSTGEKHGGDVKDQISTLPVRARWLYEPDGRDRIGASHFRKIYFCSCGKLEKSS 536
             S+    S+ E +G  +  Q S++ VRA+WLYEPD  DR+ ASHFRK++ CSCGKLE S 
Sbjct: 304  ESHKPPESS-ESNG--LSSQNSSVVVRAKWLYEPDETDRLNASHFRKVFRCSCGKLETSL 360

Query: 537  GIDYIEISICGESFMLHQIRKMIGTAVAVKRKLLPEDLIEMSLIKFSRIVLPLAPSEVLI 716
            G DYIE+ I G+SFMLHQIRKM+GTAVAVKR L+P D I +SL KFSRIVLPLAP EVLI
Sbjct: 361  GYDYIEVHIWGDSFMLHQIRKMVGTAVAVKRNLIPRDAILLSLSKFSRIVLPLAPPEVLI 420

Query: 717  LRGNQFSVRKHPGNITRPEVLKLVESEDVLKEVNEFYESVMLPQVSKFLDSSNHPWKEWV 896
            LRGN F +R   GN TR E++ +VESE +L+ V+EFY SV+LP+VSKFLDSSN PW +WV
Sbjct: 421  LRGNAFKMRASAGNFTRQEMVSMVESEQILEAVDEFYTSVVLPEVSKFLDSSNSPWAKWV 480

Query: 897  ETLDANTSIPDEELEEVRRAWKSWKESFRIRTEAPA 1004
            E LD  +SIPD EL+EVR+AWK+WKE+FR+++ + A
Sbjct: 481  ENLDKYSSIPDAELDEVRKAWKTWKENFRLKSASKA 516


>ref|XP_003615971.1| Pseudouridylate synthase [Medicago truncatula]
            gi|355517306|gb|AES98929.1| Pseudouridylate synthase
            [Medicago truncatula]
          Length = 501

 Score =  358 bits (918), Expect = 2e-96
 Identities = 190/330 (57%), Positives = 237/330 (71%), Gaps = 4/330 (1%)
 Frame = +3

Query: 3    NFDARRECSVRKYSYLLPAEIIGIRNDISSTEIDHHLSEFNHILRSFEGEHPFHNYTIRS 182
            +FD R+EC +RKYSYLLPA+IIGI++  S+ EID+H+SEFN IL+ FEG HPFHNYT RS
Sbjct: 172  SFDPRKECVLRKYSYLLPADIIGIQSHSSNDEIDYHMSEFNDILKEFEGGHPFHNYTSRS 231

Query: 183  KYRKQPPPGKSHIRRVRELPQEAPGXXXXXXXXXXXCGVDGEAVLDLTGDGTCPSNSNAS 362
            +YR+  P   SH +    L   A               VD EA   LTG+  C +  ++ 
Sbjct: 232  RYRRHIPRRPSHSKCGEIL--SAYNSEQEDSDEEENFKVD-EA---LTGNIECQNQKSSG 285

Query: 363  NDHS----VSTGEKHGGDVKDQISTLPVRARWLYEPDGRDRIGASHFRKIYFCSCGKLEK 530
               S    + TG K  G++ DQ S+  VRA+WLYEPD  DR+ ASHFR+++ CS GKLEK
Sbjct: 286  TSDSCEPVIETGNK--GNLHDQSSSSVVRAKWLYEPDEADRLNASHFRRVFRCSSGKLEK 343

Query: 531  SSGIDYIEISICGESFMLHQIRKMIGTAVAVKRKLLPEDLIEMSLIKFSRIVLPLAPSEV 710
            S G  YIEI I GESFMLHQIRKM+ TAVAVKRKLLP D+I +SL KFSRI+LPLAPSEV
Sbjct: 344  SMGHSYIEIYIEGESFMLHQIRKMVATAVAVKRKLLPRDIITLSLSKFSRIILPLAPSEV 403

Query: 711  LILRGNQFSVRKHPGNITRPEVLKLVESEDVLKEVNEFYESVMLPQVSKFLDSSNHPWKE 890
            L+LRGN FS+R  PGN+TRPE+  +VESE++ K V++FY SVMLPQVSKFLD S  PW E
Sbjct: 404  LLLRGNSFSMRTKPGNVTRPEMQTIVESEEINKVVDDFYRSVMLPQVSKFLDPSRVPWVE 463

Query: 891  WVETLDANTSIPDEELEEVRRAWKSWKESF 980
            W+E  DA+TSIP+++L+EVR+A   WKE+F
Sbjct: 464  WIEKFDAHTSIPNDQLDEVRKARNLWKENF 493