BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00012173
         (1360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [...   505   e-141
ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [...   504   e-140
ref|XP_003556222.1| PREDICTED: RNA pseudourine synthase 5-like [...   498   e-138
ref|XP_002312025.1| predicted protein [Populus trichocarpa] gi|2...   497   e-138
ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatul...   492   e-137

>ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  505 bits (1301), Expect = e-141
 Identities = 247/360 (68%), Positives = 295/360 (81%), Gaps = 1/360 (0%)
 Frame = +2

Query: 62   GVAWPDLNDGLNYTDIFRTPEHAGSDSASLIQFYSTNHNNSAPLQGWLQRIRNGQISIDG 241
            G+ WPDLNDGL Y D+ + P+       SLI FYS  + +SAPL+GWLQRI+N QI+IDG
Sbjct: 11   GIPWPDLNDGLFYNDVVKPPD----SGKSLIHFYSWKYKSSAPLEGWLQRIKNEQITIDG 66

Query: 242  QVVTDPHTILRPGSKLVYHRLPWKEPDAPYLLQVLFEDHHLVALNKPSGLQVLPGGLFQQ 421
            +V+TDP TILR GS LVY RLPWKEPD PYLL++L+ED+ ++ALNKPSGLQVLPGG+FQQ
Sbjct: 67   EVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQ 126

Query: 422  RTVLTQLQWRWLNNQSSSYPE-LQPVPVHRLGRGTSGILLCAKTKLARVRLASYFAHGTS 598
            RTVLTQLQW W + QS S  E L PVPVHRLGRGTSGILLCAKTKLAR + A+YFA GTS
Sbjct: 127  RTVLTQLQW-WSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFAEGTS 185

Query: 599  ALSDRRITSIDLGTTRKISKIYRALVTGIIEEHQVAIKQPIGLIRYPGVAHGLYVASSSG 778
            ++   R ++++ GT RKISKIYRALVTGII + +V++ QPIG ++YPGVA GLYVA+ SG
Sbjct: 186  SVRRNRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVATPSG 245

Query: 779  RPALSKVNVLERNIQANHSLVKVEIQSGRPHQIRIHLSFIGHPLLGDPLYVSGGHPNCFD 958
            +PA SKVNVLER+ Q+ H+LV+VEIQSGRPHQIRIHLS IGHPLLGDPLYV+GG PNC  
Sbjct: 246  KPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPNCLH 305

Query: 959  SESRDDDCAQDGGYMRPMKPVPGDCGYYLHAYQLVLHHPFTNEVIEITAPLPSILETQEE 1138
            SE  +   A+DGGY RP KPVPGDCGYYLHA+QL+L+HP TNEV++I APLP IL T+ E
Sbjct: 306  SEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEVVKIIAPLPPILRTRIE 365


>ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  504 bits (1298), Expect = e-140
 Identities = 246/360 (68%), Positives = 295/360 (81%), Gaps = 1/360 (0%)
 Frame = +2

Query: 62   GVAWPDLNDGLNYTDIFRTPEHAGSDSASLIQFYSTNHNNSAPLQGWLQRIRNGQISIDG 241
            G+ WPDLNDGL Y D+ + P+       SLI FYS  + +SAPL+GWLQRI+N QI+IDG
Sbjct: 11   GIPWPDLNDGLFYNDVVKPPD----SGKSLIHFYSWKYKSSAPLEGWLQRIKNEQITIDG 66

Query: 242  QVVTDPHTILRPGSKLVYHRLPWKEPDAPYLLQVLFEDHHLVALNKPSGLQVLPGGLFQQ 421
            +V+TDP TILR GS LVY RLPWKEPD PYLL++L+ED+ ++ALNKPSGLQVLPGG+FQQ
Sbjct: 67   EVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQ 126

Query: 422  RTVLTQLQWRWLNNQSSSYPE-LQPVPVHRLGRGTSGILLCAKTKLARVRLASYFAHGTS 598
            RTVLTQLQW W + QS S  E L PVPVHRLGRGTSGILLCAKTKLAR + A+YFA GTS
Sbjct: 127  RTVLTQLQW-WSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFAEGTS 185

Query: 599  ALSDRRITSIDLGTTRKISKIYRALVTGIIEEHQVAIKQPIGLIRYPGVAHGLYVASSSG 778
            ++   R ++++ GT RKISKIYRALVTGII + +V++ QPIG ++YPGVA GLYVA+ SG
Sbjct: 186  SVRRNRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVATPSG 245

Query: 779  RPALSKVNVLERNIQANHSLVKVEIQSGRPHQIRIHLSFIGHPLLGDPLYVSGGHPNCFD 958
            +PA SKVNVLER+ Q+ H+LV+VEIQSGRPHQIRIHLS IGHPL+GDPLYV+GG PNC  
Sbjct: 246  KPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLVGDPLYVAGGQPNCLH 305

Query: 959  SESRDDDCAQDGGYMRPMKPVPGDCGYYLHAYQLVLHHPFTNEVIEITAPLPSILETQEE 1138
            SE  +   A+DGGY RP KPVPGDCGYYLHA+QL+L+HP TNEV++I APLP IL T+ E
Sbjct: 306  SEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEVVKIIAPLPPILRTRIE 365


>ref|XP_003556222.1| PREDICTED: RNA pseudourine synthase 5-like [Glycine max]
          Length = 371

 Score =  498 bits (1282), Expect = e-138
 Identities = 244/362 (67%), Positives = 293/362 (80%), Gaps = 2/362 (0%)
 Frame = +2

Query: 59   FGVAWPDLNDGLNYTDIFRTPEHAGSDSASLIQFYSTNHNNSAPLQGWLQRIRNGQISID 238
            FG+ WP+ NDGL+Y D+ R    A    A+LI+FYST + +SAPLQGWLQRI++GQI++D
Sbjct: 7    FGIPWPECNDGLSYDDVVR----ASDAGATLIEFYSTKYKSSAPLQGWLQRIKSGQITVD 62

Query: 239  GQVVTDPHTILRPGSKLVYHRLPWKEPDAPYLLQVLFEDHHLVALNKPSGLQVLPGGLFQ 418
            G VVTD +T+LR GSKL+YHRLPWKEPDAP+++ VL+ED  ++ALNKPSGLQVLPGGL+Q
Sbjct: 63   GGVVTDSNTVLRVGSKLIYHRLPWKEPDAPHMIDVLYEDDDMIALNKPSGLQVLPGGLYQ 122

Query: 419  QRTVLTQLQWRWLNNQSSS--YPELQPVPVHRLGRGTSGILLCAKTKLARVRLASYFAHG 592
            QRT+LTQLQW   NNQ +   +  L PVPVHRLGRGTSGILLCAKTKLAR RLAS+FA G
Sbjct: 123  QRTILTQLQWE-ANNQGTCEMHKRLHPVPVHRLGRGTSGILLCAKTKLARARLASHFADG 181

Query: 593  TSALSDRRITSIDLGTTRKISKIYRALVTGIIEEHQVAIKQPIGLIRYPGVAHGLYVASS 772
            TS +  +R T  +LG   KI+K+YRALV+GI+E  +V I QPIG+++YPGVA GLYVAS 
Sbjct: 182  TSHVGGKRDTKQELG---KIAKMYRALVSGIVENDKVTINQPIGIVKYPGVAKGLYVASE 238

Query: 773  SGRPALSKVNVLERNIQANHSLVKVEIQSGRPHQIRIHLSFIGHPLLGDPLYVSGGHPNC 952
            SG+PALS V++LE NIQ N +LV+V+IQSGRPHQIRIHLSFIGHPLLGDPLY  GG P C
Sbjct: 239  SGKPALSVVDILETNIQENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYGVGGQPKC 298

Query: 953  FDSESRDDDCAQDGGYMRPMKPVPGDCGYYLHAYQLVLHHPFTNEVIEITAPLPSILETQ 1132
             D +  D+  A+DGGY RP KPVPGDCGYYLHA++LVL HP TNE+IEI APLPS L T 
Sbjct: 299  LDCDFVDESFAEDGGYQRPTKPVPGDCGYYLHAHKLVLSHPTTNELIEIIAPLPSALHTA 358

Query: 1133 EE 1138
            EE
Sbjct: 359  EE 360


>ref|XP_002312025.1| predicted protein [Populus trichocarpa] gi|222851845|gb|EEE89392.1|
            predicted protein [Populus trichocarpa]
          Length = 377

 Score =  497 bits (1280), Expect = e-138
 Identities = 250/363 (68%), Positives = 286/363 (78%), Gaps = 2/363 (0%)
 Frame = +2

Query: 56   TFGVAWPDLNDGLNYTDIFRTPEHAGSDSASLIQFYSTNHNNSAPLQGWLQRIRNGQISI 235
            +FG  WPDLN+GL Y D+  T   +G    +LI FYS+ + NSAPLQGWLQRI NGQI+I
Sbjct: 13   SFGSPWPDLNEGLFYNDVVSTSSDSG---LTLIHFYSSKYKNSAPLQGWLQRIHNGQITI 69

Query: 236  DGQVVTDPHTILRPGSKLVYHRLPWKEPDAPYLLQVLFEDHHLVALNKPSGLQVLPGGLF 415
            DG+VV +P  ILR G +LVYHRLPW+EPDAPYLLQVL+ED  +VALNKP GLQVLPGGLF
Sbjct: 70   DGEVVKEPKAILRDGMELVYHRLPWREPDAPYLLQVLYEDDDMVALNKPPGLQVLPGGLF 129

Query: 416  QQRTVLTQLQWRWLNNQSS-SYPELQPVPVHRLGRGTSGILLCAKTKLARVRLASYFAHG 592
            QQRTVL QLQWR     SS +     PVPVHRLGRGTSGILLCAKTK+A+  LA+YFA G
Sbjct: 130  QQRTVLMQLQWRASKGSSSLAIQGSHPVPVHRLGRGTSGILLCAKTKVAKTSLAAYFADG 189

Query: 593  TSALSDRRITSIDLGTTRKISKIYRALVTGIIEEHQVAIKQPIGLIRYPGVAHGLYVASS 772
            TS + D    +++    RKISKIYRALV GI+ + ++ IKQPIG +RYPGVA GLYVAS 
Sbjct: 190  TSLIGDSSNANMEQSKRRKISKIYRALVNGILNQDKIIIKQPIGTMRYPGVAKGLYVASP 249

Query: 773  SGRPALSKVNVLERNIQANHSLVKVEIQSGRPHQIRIHLSFIGHPLLGDPLYVSGGHPNC 952
            SG+PALSKV VLER+ Q N +LV+VEI+SGRPHQIRIHLSFIGHPLLGDPLY  GG P C
Sbjct: 250  SGKPALSKVEVLERDSQLNQTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYDVGGQPMC 309

Query: 953  FDSESRDDDCAQDGGYMRPMKPVPGDCGYYLHAYQLVLHHPFTNE-VIEITAPLPSILET 1129
            FDSE  D+  A+DGGY RP KPVPGDCGYYLHA+QLVL HP  NE VI+ITAPLPSIL T
Sbjct: 310  FDSEHEDESFAEDGGYERPAKPVPGDCGYYLHAHQLVLSHPTKNEQVIKITAPLPSILRT 369

Query: 1130 QEE 1138
            Q E
Sbjct: 370  QAE 372


>ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatula]
            gi|358349060|ref|XP_003638558.1| RNA pseudourine synthase
            [Medicago truncatula] gi|355481000|gb|AES62203.1| RNA
            pseudourine synthase [Medicago truncatula]
            gi|355504493|gb|AES85696.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 371

 Score =  492 bits (1267), Expect = e-137
 Identities = 245/362 (67%), Positives = 296/362 (81%), Gaps = 3/362 (0%)
 Frame = +2

Query: 62   GVAWPDLNDGLNYTDIFRTPEHAGSDSASLIQFYSTNHNNSAPLQGWLQRIRNGQISIDG 241
            G+ WP+ NDGL+Y D+ R P  AG    +LI+FYST + +SAPLQGWLQRI++ QI++D 
Sbjct: 8    GIPWPEFNDGLSYDDVVR-PSDAG---LTLIEFYSTKYKSSAPLQGWLQRIKSDQITLDA 63

Query: 242  QVVTDPHTILRPGSKLVYHRLPWKEPDAPYLLQVLFEDHHLVALNKPSGLQVLPGGLFQQ 421
            +VVTDP+TILR GSKLVYHR+PWKEPDAP+ ++VL+ED  ++ALNKPSGLQVLPGGLFQQ
Sbjct: 64   RVVTDPNTILRVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQ 123

Query: 422  RTVLTQLQWRWLNNQSS--SYPELQPVPVHRLGRGTSGILLCAKTKLARVRLASYFAHGT 595
            RTVLTQLQW   NN+S+  ++ +  PVPVHRLGRGTSGILLCAKTKLAR RLASYFA GT
Sbjct: 124  RTVLTQLQWE-TNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADGT 182

Query: 596  SALSDRRITSIDLGTTRKISKIYRALVTGIIEEHQVAIKQPIGLIRYPGVAHGLYVASSS 775
            S +  +  T+ +LG   KI+KIYRALV+GII   QV I QPIG+++YPGVA GLYVAS S
Sbjct: 183  SRIEGKGHTNQELG---KIAKIYRALVSGIINNDQVTINQPIGMVKYPGVAKGLYVASQS 239

Query: 776  GRPALSKVNVLERNIQANHSLVK-VEIQSGRPHQIRIHLSFIGHPLLGDPLYVSGGHPNC 952
            G+PALS V+VLERN++ N +LV+ V+IQSGRPHQIRIHLSFIGHPLLGDPLY  GG P C
Sbjct: 240  GKPALSVVHVLERNVKENSTLVQVVKIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQPKC 299

Query: 953  FDSESRDDDCAQDGGYMRPMKPVPGDCGYYLHAYQLVLHHPFTNEVIEITAPLPSILETQ 1132
             D +  D+  A+DGGY RP KPVPGDCGY+LHA++L L HP TNE+IE+ APLPSIL+T 
Sbjct: 300  LDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIAPLPSILQTH 359

Query: 1133 EE 1138
            EE
Sbjct: 360  EE 361