BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00011957
         (2256 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    82   8e-13
emb|CBI26821.3| unnamed protein product [Vitis vinifera]               82   8e-13
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    82   8e-13
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]    82   8e-13
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...    81   1e-12

>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1125

 Score = 81.6 bits (200), Expect = 8e-13
 Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 8/83 (9%)
 Frame = -3

Query: 787  RLFSNVVNYLKTGVPTVIPPY*HAEEYSNFMKNNDKPSYESNRVLGKLFIEVKDIAPETE 608
            RLFS  V++ KTGVP VIPP  H +EY +FM+  DKP+Y+S+ V+GKLF EVK+I+    
Sbjct: 894  RLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTSAG 953

Query: 607  --------LAMQSYDYNIKVDGF 563
                    +A  SYD+ ++VDGF
Sbjct: 954  SITSFTKLVARDSYDHEMEVDGF 976



 Score = 71.2 bits (173), Expect = 1e-09
 Identities = 34/63 (53%), Positives = 42/63 (66%)
 Frame = +1

Query: 847  SETSIDLAKLFPNVVDHSKIGVPTIIPPYLHAKVCPDFMGNIDKSSYESHRVLRKLFREV 1026
            S+  + LA+LF   VD  K GVP +IPP LH K  PDFM   DK +Y+SH V+ KLFREV
Sbjct: 886  SDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREV 945

Query: 1027 GDI 1035
             +I
Sbjct: 946  KEI 948


>emb|CBI26821.3| unnamed protein product [Vitis vinifera]
          Length = 943

 Score = 81.6 bits (200), Expect = 8e-13
 Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 8/83 (9%)
 Frame = -3

Query: 787 RLFSNVVNYLKTGVPTVIPPY*HAEEYSNFMKNNDKPSYESNRVLGKLFIEVKDIAPET- 611
           +LFS  + + KTGVP  IP + H +EY +FM+  +KP+YES  V+GKLF EVKD+AP   
Sbjct: 719 KLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNY 778

Query: 610 -------ELAMQSYDYNIKVDGF 563
                  ++AMQSYD +++VDGF
Sbjct: 779 DVRSFTRDVAMQSYDADMEVDGF 801



 Score = 60.1 bits (144), Expect = 3e-06
 Identities = 30/58 (51%), Positives = 38/58 (65%)
 Frame = +1

Query: 862  DLAKLFPNVVDHSKIGVPTIIPPYLHAKVCPDFMGNIDKSSYESHRVLRKLFREVGDI 1035
            +LAKLF   ++  K GVP  IP +LH K  PDFM   +K +YES  V+ KLFREV D+
Sbjct: 716  ELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDV 773


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 81.6 bits (200), Expect = 8e-13
 Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 8/83 (9%)
 Frame = -3

Query: 787  RLFSNVVNYLKTGVPTVIPPY*HAEEYSNFMKNNDKPSYESNRVLGKLFIEVKDIAPET- 611
            +LFS  + + KTGVP  IP + H +EY +FM+  +KP+YES  V+GKLF EVKD+AP   
Sbjct: 885  KLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNY 944

Query: 610  -------ELAMQSYDYNIKVDGF 563
                   ++AMQSYD +++VDGF
Sbjct: 945  DVRSFTRDVAMQSYDADMEVDGF 967



 Score = 60.1 bits (144), Expect = 3e-06
 Identities = 30/58 (51%), Positives = 38/58 (65%)
 Frame = +1

Query: 862  DLAKLFPNVVDHSKIGVPTIIPPYLHAKVCPDFMGNIDKSSYESHRVLRKLFREVGDI 1035
            +LAKLF   ++  K GVP  IP +LH K  PDFM   +K +YES  V+ KLFREV D+
Sbjct: 882  ELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDV 939


>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
          Length = 697

 Score = 81.6 bits (200), Expect = 8e-13
 Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 8/83 (9%)
 Frame = -3

Query: 787 RLFSNVVNYLKTGVPTVIPPY*HAEEYSNFMKNNDKPSYESNRVLGKLFIEVKDIAPET- 611
           +LFS  + + KTGVP  IP + H +EY +FM+  +KP+YES  V+GKLF EVKD+AP   
Sbjct: 429 KLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNY 488

Query: 610 -------ELAMQSYDYNIKVDGF 563
                  ++AMQSYD +++VDGF
Sbjct: 489 DIRSFTRDVAMQSYDADMEVDGF 511



 Score = 60.1 bits (144), Expect = 3e-06
 Identities = 30/58 (51%), Positives = 38/58 (65%)
 Frame = +1

Query: 862  DLAKLFPNVVDHSKIGVPTIIPPYLHAKVCPDFMGNIDKSSYESHRVLRKLFREVGDI 1035
            +LAKLF   ++  K GVP  IP +LH K  PDFM   +K +YES  V+ KLFREV D+
Sbjct: 426  ELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDV 483


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score = 80.9 bits (198), Expect = 1e-12
 Identities = 44/83 (53%), Positives = 54/83 (65%), Gaps = 8/83 (9%)
 Frame = -3

Query: 787  RLFSNVVNYLKTGVPTVIPPY*HAEEYSNFMKNNDKPSYESNRVLGKLFIEVKDIAPET- 611
            R FS  V++ KTGVP  IP    A EY +FM+  DKPSYES  V+GKLF EVKDIAP T 
Sbjct: 897  RKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTS 956

Query: 610  -------ELAMQSYDYNIKVDGF 563
                   ++A Q YD +++VDGF
Sbjct: 957  SIRSFTSDVARQCYDPDMEVDGF 979



 Score = 63.2 bits (152), Expect = 3e-07
 Identities = 34/63 (53%), Positives = 39/63 (61%)
 Frame = +1

Query: 847  SETSIDLAKLFPNVVDHSKIGVPTIIPPYLHAKVCPDFMGNIDKSSYESHRVLRKLFREV 1026
            SE  ++LA+ F   VD  K GVP  IP  L A+  PDFM   DK SYES  V+ KLFREV
Sbjct: 889  SEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREV 948

Query: 1027 GDI 1035
             DI
Sbjct: 949  KDI 951