BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00011888
         (1102 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004152096.1| PREDICTED: ribonuclease H2 subunit A-like [C...   481   e-133
ref|XP_002269817.1| PREDICTED: ribonuclease H2 subunit A isoform...   480   e-133
ref|XP_002311009.1| predicted protein [Populus trichocarpa] gi|2...   478   e-133
ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ric...   473   e-131
ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [S...   473   e-131

>ref|XP_004152096.1| PREDICTED: ribonuclease H2 subunit A-like [Cucumis sativus]
            gi|449529756|ref|XP_004171864.1| PREDICTED: ribonuclease
            H2 subunit A-like [Cucumis sativus]
          Length = 297

 Score =  481 bits (1237), Expect = e-133
 Identities = 232/296 (78%), Positives = 259/296 (87%)
 Frame = -2

Query: 1077 SPPSLPKWAPEPCIMGIDEAGRGPVLGPMVYGCLYCPLSYKETLSSLKFADSKTLKEEKR 898
            S  SLPKW  +PC+MGIDEAGRGPVLGPMVYGCLYC  SY + LSSL FADSKTLKEEKR
Sbjct: 3    SQDSLPKWTSKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKQLSSLNFADSKTLKEEKR 62

Query: 897  EELFESLKLDESIGWAVDVIGPQELSAKMLKKTKINLNEISHQSASGLVGRVLDMGFLLT 718
            EELFE LK +ESIGWAVDVI P+ELS+KML K KINLNEISH SA GLV +VL MG LLT
Sbjct: 63   EELFEDLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLSMGVLLT 122

Query: 717  EVYVDTVGDPEKYRIKLSERYPSVKFVVAKKADSLYPVVSGASIVAKVTRDRAVRNWVFD 538
            EVYVDTVGDPEKYRIKLSE++P++KFVVAKKADSLYPVVSGASIVAKVTRDRA+R W  +
Sbjct: 123  EVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALE 182

Query: 537  ETAENMHTNFGSGYPGDPETKAWLDDHKHLVFGFPTMVRFSWGTCTPYFKKLVEVSWESD 358
            ETAENMH NFGSGYPGDP TK WL+DHKH VFGFPT+VRFSWGTCT YFK +VEVSWESD
Sbjct: 183  ETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVSWESD 242

Query: 357  EIDEEGSNNNSGNRRQLKLSSVGVTGYKRKSEEIESSGKGRCKFFETRKLELLTHF 190
            ++DE+G+   SG ++QL+LS+VG+T  KRKSEEIESSGKGRCKFF+ RKLE L+ F
Sbjct: 243  KVDEDGATGGSG-KKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQARKLEQLSRF 297


>ref|XP_002269817.1| PREDICTED: ribonuclease H2 subunit A isoform 1 [Vitis vinifera]
            gi|296086584|emb|CBI32219.3| unnamed protein product
            [Vitis vinifera]
          Length = 297

 Score =  480 bits (1235), Expect = e-133
 Identities = 240/302 (79%), Positives = 261/302 (86%)
 Frame = -2

Query: 1095 MGSEAVSPPSLPKWAPEPCIMGIDEAGRGPVLGPMVYGCLYCPLSYKETLSSLKFADSKT 916
            MGSE     +LPKWA EPC+MGIDEAGRGPVLGPMVYGCLYC  SY  TLS+L FADSKT
Sbjct: 1    MGSET----ALPKWASEPCMMGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKT 56

Query: 915  LKEEKREELFESLKLDESIGWAVDVIGPQELSAKMLKKTKINLNEISHQSASGLVGRVLD 736
            LKEEKREELFE+LK DESIGWAVDVI P ELSAKMLKK KINLNEISH SA GL+ RVL+
Sbjct: 57   LKEEKREELFENLKADESIGWAVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLN 116

Query: 735  MGFLLTEVYVDTVGDPEKYRIKLSERYPSVKFVVAKKADSLYPVVSGASIVAKVTRDRAV 556
            MG LLTEVYVDTVGD EKYRIKLSER+P+VKFVVAKKADSLYPVVSGASIVAKVTRDRA+
Sbjct: 117  MGVLLTEVYVDTVGDAEKYRIKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRAL 176

Query: 555  RNWVFDETAENMHTNFGSGYPGDPETKAWLDDHKHLVFGFPTMVRFSWGTCTPYFKKLVE 376
            R+WV  ETAENMH NFGSGYPGDP TK+WL  HKH VFGFPT+VRFSWGTCT Y K +VE
Sbjct: 177  RDWVLVETAENMHRNFGSGYPGDPVTKSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDIVE 236

Query: 375  VSWESDEIDEEGSNNNSGNRRQLKLSSVGVTGYKRKSEEIESSGKGRCKFFETRKLELLT 196
            V WE+D+++E+GS N +G +RQLKLSSVG    KRKSEEIESSGKGRCKFF+ RKLE LT
Sbjct: 237  VLWEADKVEEDGSTNRNG-KRQLKLSSVGFIESKRKSEEIESSGKGRCKFFQARKLEQLT 295

Query: 195  HF 190
             F
Sbjct: 296  QF 297


>ref|XP_002311009.1| predicted protein [Populus trichocarpa] gi|222850829|gb|EEE88376.1|
            predicted protein [Populus trichocarpa]
          Length = 297

 Score =  478 bits (1231), Expect = e-133
 Identities = 238/302 (78%), Positives = 267/302 (88%)
 Frame = -2

Query: 1095 MGSEAVSPPSLPKWAPEPCIMGIDEAGRGPVLGPMVYGCLYCPLSYKETLSSLKFADSKT 916
            M SE++    LP WA +PCIMGIDEAGRGPVLGPMVYGCLYC  SY++TLS+LKFADSKT
Sbjct: 1    MESESI----LPDWASKPCIMGIDEAGRGPVLGPMVYGCLYCARSYEKTLSTLKFADSKT 56

Query: 915  LKEEKREELFESLKLDESIGWAVDVIGPQELSAKMLKKTKINLNEISHQSASGLVGRVLD 736
            LKEEKREELFE LK +E IGWAVDVI P+ELSAKMLKK KINLNEISH SASGLV RVL+
Sbjct: 57   LKEEKREELFEKLKANELIGWAVDVIDPRELSAKMLKKIKINLNEISHDSASGLVTRVLN 116

Query: 735  MGFLLTEVYVDTVGDPEKYRIKLSERYPSVKFVVAKKADSLYPVVSGASIVAKVTRDRAV 556
            MG LLT+VYVDTVGDPEKYRIKLSER+PS+KFVVAKKADSLYPVVSGASIVAKVTRDRA+
Sbjct: 117  MGVLLTDVYVDTVGDPEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRAL 176

Query: 555  RNWVFDETAENMHTNFGSGYPGDPETKAWLDDHKHLVFGFPTMVRFSWGTCTPYFKKLVE 376
            R+WV DETAENM  NFGSGYPGDPETK+WL+ H+H VFGFP++VRFSWGTCT Y K +VE
Sbjct: 177  RDWVLDETAENMTRNFGSGYPGDPETKSWLEKHQHSVFGFPSLVRFSWGTCTSYSKNMVE 236

Query: 375  VSWESDEIDEEGSNNNSGNRRQLKLSSVGVTGYKRKSEEIESSGKGRCKFFETRKLELLT 196
            V WESD+ +E+GS+++SG +RQLKLSS GVT  KRKSEEIESSGK RCKFF+ RKLE L 
Sbjct: 237  VVWESDKTEEDGSSSSSG-KRQLKLSSFGVTTSKRKSEEIESSGKSRCKFFQARKLEQLA 295

Query: 195  HF 190
            +F
Sbjct: 296  NF 297


>ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ricinus communis]
            gi|223545084|gb|EEF46595.1| ribonuclease hi large
            subunit, putative [Ricinus communis]
          Length = 299

 Score =  473 bits (1217), Expect = e-131
 Identities = 234/302 (77%), Positives = 265/302 (87%)
 Frame = -2

Query: 1095 MGSEAVSPPSLPKWAPEPCIMGIDEAGRGPVLGPMVYGCLYCPLSYKETLSSLKFADSKT 916
            MGSE  S  +LPKWA +PCIMGIDEAGRGPVLGPMVYGCLYC  SY+ TLS+L FADSKT
Sbjct: 1    MGSETQS--TLPKWASKPCIMGIDEAGRGPVLGPMVYGCLYCARSYERTLSTLSFADSKT 58

Query: 915  LKEEKREELFESLKLDESIGWAVDVIGPQELSAKMLKKTKINLNEISHQSASGLVGRVLD 736
            LKE+KREELFE+LK +ESIGWAVDVI P+ELSAKML+K KINLNEISH+SA GL+ RVL+
Sbjct: 59   LKEDKREELFENLKANESIGWAVDVIDPRELSAKMLQKNKINLNEISHESAIGLITRVLN 118

Query: 735  MGFLLTEVYVDTVGDPEKYRIKLSERYPSVKFVVAKKADSLYPVVSGASIVAKVTRDRAV 556
             G LLT+VY+DTVGD EKYRIKLSER+PS+KFVVAKKADSLYPVVSGASIVAKVTRDRA+
Sbjct: 119  EGVLLTQVYLDTVGDAEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRAL 178

Query: 555  RNWVFDETAENMHTNFGSGYPGDPETKAWLDDHKHLVFGFPTMVRFSWGTCTPYFKKLVE 376
            RNWV +ETAE +  NFGSGYPGDPETKAWL  HKH VFGFPT+VRFSWGTC  Y+K  VE
Sbjct: 179  RNWVLEETAEGISRNFGSGYPGDPETKAWLKQHKHQVFGFPTLVRFSWGTCNSYYKDAVE 238

Query: 375  VSWESDEIDEEGSNNNSGNRRQLKLSSVGVTGYKRKSEEIESSGKGRCKFFETRKLELLT 196
            V WESD++DE+ S N++G +RQLKLSS G+T  K KSEEIESSGKGRCKFF++RKLE L+
Sbjct: 239  VLWESDKMDEDDSVNSNG-KRQLKLSSFGITIPKTKSEEIESSGKGRCKFFQSRKLEQLS 297

Query: 195  HF 190
            HF
Sbjct: 298  HF 299


>ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
            gi|241942544|gb|EES15689.1| hypothetical protein
            SORBIDRAFT_08g003480 [Sorghum bicolor]
          Length = 297

 Score =  473 bits (1216), Expect = e-131
 Identities = 225/293 (76%), Positives = 262/293 (89%), Gaps = 1/293 (0%)
 Frame = -2

Query: 1065 LPKWAP-EPCIMGIDEAGRGPVLGPMVYGCLYCPLSYKETLSSLKFADSKTLKEEKREEL 889
            +P+WA  EPC+MGIDEAGRGPVLGPMVYGC+YC  SY  TLS+LKFADSKTLKEE+REEL
Sbjct: 5    VPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNNTLSTLKFADSKTLKEEQREEL 64

Query: 888  FESLKLDESIGWAVDVIGPQELSAKMLKKTKINLNEISHQSASGLVGRVLDMGFLLTEVY 709
            FESLK++ SIGW VDVI P++LSAKMLKK+K+NLNEISH SA GLV +VLDMG LL EVY
Sbjct: 65   FESLKVNSSIGWEVDVICPKDLSAKMLKKSKVNLNEISHNSAMGLVRKVLDMGILLAEVY 124

Query: 708  VDTVGDPEKYRIKLSERYPSVKFVVAKKADSLYPVVSGASIVAKVTRDRAVRNWVFDETA 529
            +DTVGDPEKYRIKL+E++P +KFVVAKKADSLYPVVSGASIVAKVTRDRA+RNWVFDETA
Sbjct: 125  IDTVGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVFDETA 184

Query: 528  ENMHTNFGSGYPGDPETKAWLDDHKHLVFGFPTMVRFSWGTCTPYFKKLVEVSWESDEID 349
             ++H   GSGYPGDP+TK WL+DHKH VFGFPT+VRFSWGTC P+FK  VEV+WESDE+D
Sbjct: 185  LSLHMKTGSGYPGDPDTKQWLEDHKHPVFGFPTLVRFSWGTCKPFFKDAVEVTWESDEVD 244

Query: 348  EEGSNNNSGNRRQLKLSSVGVTGYKRKSEEIESSGKGRCKFFETRKLELLTHF 190
            E+G++N S  +RQ+KLSS+G TG+KRK+EEIESSGKGRCKFF+ RKLEL+  F
Sbjct: 245  EDGTDNGS-TKRQVKLSSLGFTGFKRKTEEIESSGKGRCKFFQARKLELVRKF 296