BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00011519
         (865 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278390.1| PREDICTED: pentatricopeptide repeat-containi...   288   9e-76
ref|XP_002521239.1| pentatricopeptide repeat-containing protein,...   269   7e-70
dbj|BAF01049.1| hypothetical protein [Arabidopsis thaliana]           266   6e-69
ref|NP_565402.1| pentatricopeptide repeat-containing protein [Ar...   266   6e-69
ref|NP_849962.1| pentatricopeptide repeat-containing protein [Ar...   266   6e-69

>ref|XP_002278390.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17033
           [Vitis vinifera] gi|297744557|emb|CBI37819.3| unnamed
           protein product [Vitis vinifera]
          Length = 435

 Score =  288 bits (738), Expect = 9e-76
 Identities = 160/286 (55%), Positives = 209/286 (73%), Gaps = 2/286 (0%)
 Frame = +1

Query: 13  PLLLPVSALSKQGHRLLTSLDAVSGDTNASHRLIRKFIAASSKSVALSTLSHLLS-SDVH 189
           PLL+   ALSKQG   L+S   V+ D +AS+RLI KFIA+SSKS+AL+ LSHLLS +  H
Sbjct: 18  PLLIQC-ALSKQGQLFLSS---VARDPSASNRLICKFIASSSKSIALNALSHLLSPTTTH 73

Query: 190 CH-SFLALPMYERITQTSWFSWNPKLVASVIASLEKQGCNEEAEILISESIGRLGFRERD 366
            + S LALP+Y RI++ SWFSWNPKL+A VIA L KQG  +EAE L+SE++ +LG RERD
Sbjct: 74  PYLSSLALPLYSRISEASWFSWNPKLIADVIALLYKQGQLKEAETLVSETLIKLGSRERD 133

Query: 367 VALFYCELIDLFSKHGCKESVFDYSARLKQMLSGSTSNSSLKRKAFMSMISALSTLDLPR 546
           +  FYC LID  SKH   + VFD  +RL +++S S+S   +K +A+ SMIS+L  + LP 
Sbjct: 134 LVSFYCNLIDSHSKHSSNQGVFDVISRLSRIVSESSS-VYVKERAYKSMISSLCAVGLPL 192

Query: 547 EAEEIMEEMSNVGFKPSGFEFRAITLAYGRLGMFGEMNGVLDQMEHSGHSLDTVCFNVVL 726
           EAE ++EEM   G KPS FEFR++   YGR+G+  +M  +L QM + G  LDTV  N+VL
Sbjct: 193 EAENLIEEMRVKGLKPSVFEFRSVVYGYGRVGLSEDMQRILLQMGNEGFELDTVVSNMVL 252

Query: 727 SSYGTHNELSRMVLWIQKMKNSNTPFSIRTYNTVLNSCPTIISMLQ 864
           SSYG +N+ S MV W+Q+MKNS+ PFSIRTYN+VLNSCP I+S+LQ
Sbjct: 253 SSYGAYNKQSEMVSWLQRMKNSSIPFSIRTYNSVLNSCPMIMSILQ 298


>ref|XP_002521239.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539507|gb|EEF41095.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 460

 Score =  269 bits (687), Expect = 7e-70
 Identities = 144/290 (49%), Positives = 193/290 (66%), Gaps = 4/290 (1%)
 Frame = +1

Query: 7   PRPLLLPVSALSKQGHRLLTSLDAVS--GDTNASHRLIRKFIAASSKSVALSTLSHLLSS 180
           P   +   +ALSKQG R L+SL   +  GDT A++RLI+KF+AAS KS+AL  LSHLL+ 
Sbjct: 35  PMKWVFRCAALSKQGQRFLSSLAIATTKGDTVATNRLIKKFVAASPKSIALDALSHLLNP 94

Query: 181 -DVHCH-SFLALPMYERITQTSWFSWNPKLVASVIASLEKQGCNEEAEILISESIGRLGF 354
              H H S LA  +Y +I +  WF WNPKLVA V+A L+KQG  +E+  L+S+SI +L  
Sbjct: 95  HSSHSHLSSLAFTLYLKIAEARWFQWNPKLVADVVAFLDKQGRYDESATLVSDSISKLQV 154

Query: 355 RERDVALFYCELIDLFSKHGCKESVFDYSARLKQMLSGSTSNSSLKRKAFMSMISALSTL 534
           +ERD+A FYC L++  SK        +  A L Q++  S S   +KR+ + SM++ L  +
Sbjct: 155 KERDLARFYCNLVESQSKQNSIRGFDNSVASLMQLVCNSNS-VYVKRQGYKSMVNGLCEM 213

Query: 535 DLPREAEEIMEEMSNVGFKPSGFEFRAITLAYGRLGMFGEMNGVLDQMEHSGHSLDTVCF 714
             PREAE ++EEM   G +PS FEF+ +  AYG LG F EMN  L QME +G  +DTVC 
Sbjct: 214 GRPREAETLIEEMGKEGVRPSMFEFKCVVYAYGSLGSFEEMNKCLHQMERAGFRVDTVCS 273

Query: 715 NVVLSSYGTHNELSRMVLWIQKMKNSNTPFSIRTYNTVLNSCPTIISMLQ 864
           N++L+SYG HN L  MVLW+QKMK+   PFS+RT N+ LNSCPTI+SM+Q
Sbjct: 274 NMILASYGAHNALPEMVLWLQKMKDLGIPFSLRTCNSALNSCPTIMSMMQ 323


>dbj|BAF01049.1| hypothetical protein [Arabidopsis thaliana]
          Length = 501

 Score =  266 bits (679), Expect = 6e-69
 Identities = 141/280 (50%), Positives = 191/280 (68%), Gaps = 4/280 (1%)
 Frame = +1

Query: 37  LSKQGHRLLTSLD--AVSGDTNASHRLIRKFIAASSKSVALSTLSHLLSSDV-HCH-SFL 204
           L K G R L+SL   A++GD +A +R I+KF+AAS KSVAL+ LSHLLS    H H SF 
Sbjct: 85  LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 144

Query: 205 ALPMYERITQTSWFSWNPKLVASVIASLEKQGCNEEAEILISESIGRLGFRERDVALFYC 384
           AL +Y  IT+ SWF WNPKL+A +IA L KQ   +E+E L+S ++ RL   ERD  LF C
Sbjct: 145 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 204

Query: 385 ELIDLFSKHGCKESVFDYSARLKQMLSGSTSNSSLKRKAFMSMISALSTLDLPREAEEIM 564
            L++  SK G  +   + S RL++++  S+S   +K +A+ SM+S L  +D P +AE ++
Sbjct: 205 NLVESNSKQGSIQGFSEASFRLREIIQRSSS-VYVKTQAYKSMVSGLCNMDQPHDAERVI 263

Query: 565 EEMSNVGFKPSGFEFRAITLAYGRLGMFGEMNGVLDQMEHSGHSLDTVCFNVVLSSYGTH 744
           EEM     KP  FE++++   YGRLG+F +MN V+ +M   GH +DTVC N+VLSSYG H
Sbjct: 264 EEMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAH 323

Query: 745 NELSRMVLWIQKMKNSNTPFSIRTYNTVLNSCPTIISMLQ 864
           + L +M  W+QK+K  N PFSIRTYN+VLNSCPTIISML+
Sbjct: 324 DALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLK 363


>ref|NP_565402.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|13877877|gb|AAK44016.1|AF370201_1 unknown protein
           [Arabidopsis thaliana] gi|21280879|gb|AAM44931.1|
           unknown protein [Arabidopsis thaliana]
           gi|330251481|gb|AEC06575.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  266 bits (679), Expect = 6e-69
 Identities = 141/280 (50%), Positives = 191/280 (68%), Gaps = 4/280 (1%)
 Frame = +1

Query: 37  LSKQGHRLLTSLD--AVSGDTNASHRLIRKFIAASSKSVALSTLSHLLSSDV-HCH-SFL 204
           L K G R L+SL   A++GD +A +R I+KF+AAS KSVAL+ LSHLLS    H H SF 
Sbjct: 88  LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 147

Query: 205 ALPMYERITQTSWFSWNPKLVASVIASLEKQGCNEEAEILISESIGRLGFRERDVALFYC 384
           AL +Y  IT+ SWF WNPKL+A +IA L KQ   +E+E L+S ++ RL   ERD  LF C
Sbjct: 148 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 207

Query: 385 ELIDLFSKHGCKESVFDYSARLKQMLSGSTSNSSLKRKAFMSMISALSTLDLPREAEEIM 564
            L++  SK G  +   + S RL++++  S+S   +K +A+ SM+S L  +D P +AE ++
Sbjct: 208 NLVESNSKQGSIQGFSEASFRLREIIQRSSS-VYVKTQAYKSMVSGLCNMDQPHDAERVI 266

Query: 565 EEMSNVGFKPSGFEFRAITLAYGRLGMFGEMNGVLDQMEHSGHSLDTVCFNVVLSSYGTH 744
           EEM     KP  FE++++   YGRLG+F +MN V+ +M   GH +DTVC N+VLSSYG H
Sbjct: 267 EEMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAH 326

Query: 745 NELSRMVLWIQKMKNSNTPFSIRTYNTVLNSCPTIISMLQ 864
           + L +M  W+QK+K  N PFSIRTYN+VLNSCPTIISML+
Sbjct: 327 DALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLK 366


>ref|NP_849962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75244359|sp|Q8GWA9.1|PP157_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g17033 gi|26452937|dbj|BAC43545.1| unknown protein
           [Arabidopsis thaliana] gi|330251482|gb|AEC06576.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 505

 Score =  266 bits (679), Expect = 6e-69
 Identities = 141/280 (50%), Positives = 191/280 (68%), Gaps = 4/280 (1%)
 Frame = +1

Query: 37  LSKQGHRLLTSLD--AVSGDTNASHRLIRKFIAASSKSVALSTLSHLLSSDV-HCH-SFL 204
           L K G R L+SL   A++GD +A +R I+KF+AAS KSVAL+ LSHLLS    H H SF 
Sbjct: 89  LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 148

Query: 205 ALPMYERITQTSWFSWNPKLVASVIASLEKQGCNEEAEILISESIGRLGFRERDVALFYC 384
           AL +Y  IT+ SWF WNPKL+A +IA L KQ   +E+E L+S ++ RL   ERD  LF C
Sbjct: 149 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 208

Query: 385 ELIDLFSKHGCKESVFDYSARLKQMLSGSTSNSSLKRKAFMSMISALSTLDLPREAEEIM 564
            L++  SK G  +   + S RL++++  S+S   +K +A+ SM+S L  +D P +AE ++
Sbjct: 209 NLVESNSKQGSIQGFSEASFRLREIIQRSSS-VYVKTQAYKSMVSGLCNMDQPHDAERVI 267

Query: 565 EEMSNVGFKPSGFEFRAITLAYGRLGMFGEMNGVLDQMEHSGHSLDTVCFNVVLSSYGTH 744
           EEM     KP  FE++++   YGRLG+F +MN V+ +M   GH +DTVC N+VLSSYG H
Sbjct: 268 EEMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAH 327

Query: 745 NELSRMVLWIQKMKNSNTPFSIRTYNTVLNSCPTIISMLQ 864
           + L +M  W+QK+K  N PFSIRTYN+VLNSCPTIISML+
Sbjct: 328 DALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLK 367