BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00011516
         (1300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15323.3| unnamed protein product [Vitis vinifera]              268   3e-69
ref|XP_002265768.1| PREDICTED: rhomboid protein 1, mitochondrial...   268   3e-69
ref|XP_002890288.1| rhomboid family protein [Arabidopsis lyrata ...   248   3e-63
ref|XP_002309495.1| predicted protein [Populus trichocarpa] gi|2...   241   4e-61
ref|NP_564058.1| RHOMBOID-like protein 12 [Arabidopsis thaliana]...   238   3e-60

>emb|CBI15323.3| unnamed protein product [Vitis vinifera]
          Length = 362

 Score =  268 bits (684), Expect = 3e-69
 Identities = 139/240 (57%), Positives = 170/240 (70%), Gaps = 4/240 (1%)
 Frame = -2

Query: 939 LANPLFLKQVVSNAHLKNQCRGLV-DHVVSSRTQFPRRHFQVH-RYNTSRNRWKSWIP-- 772
           ++NP  LKQ +  A LK   + L    V   R QFPRR F     +++   RW+SW+   
Sbjct: 101 ISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGFSPSFDSYGRRWRSWLSGL 160

Query: 771 TEDNVVLGLIAANVAIFMLWRYADPSFMMKNFTISVQNFTSGRVHTLITSAFSHMDIEHI 592
           + ++VVLGLI ANVA+FMLWR +D  FM+ NFTIS+ NF SGR+HTLITSAFSH+DI H+
Sbjct: 161 STNDVVLGLIIANVAVFMLWRISDHRFMLNNFTISLDNFKSGRIHTLITSAFSHIDIGHL 220

Query: 591 FSNMIGLYFFGTSIGRCFGPEFXXXXXXXXXXXGSIFYLVHHAFMSPISQGSGMWRVDPK 412
            SNMIGLYFFG +IGR FGPEF           GS+FYLVHHAFM+P S+G  MW ++P 
Sbjct: 221 ISNMIGLYFFGMNIGRVFGPEFLLKLYLAGAVVGSVFYLVHHAFMAPSSKGQQMWSINPS 280

Query: 411 KVPGLGASGAVNAIMLLDIFLFPTAIHYVNFLIPVPAILLGAILIGKDIWRMTENNSQIS 232
            +PGLGASGAVNAIMLLDIFLFP +  Y+ F IPVPAILLG  LIGKD+ R+ E + QIS
Sbjct: 281 AIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGIFLIGKDMLRIIEGDDQIS 340


>ref|XP_002265768.1| PREDICTED: rhomboid protein 1, mitochondrial [Vitis vinifera]
          Length = 333

 Score =  268 bits (684), Expect = 3e-69
 Identities = 139/240 (57%), Positives = 170/240 (70%), Gaps = 4/240 (1%)
 Frame = -2

Query: 939 LANPLFLKQVVSNAHLKNQCRGLV-DHVVSSRTQFPRRHFQVH-RYNTSRNRWKSWIP-- 772
           ++NP  LKQ +  A LK   + L    V   R QFPRR F     +++   RW+SW+   
Sbjct: 72  ISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGFSPSFDSYGRRWRSWLSGL 131

Query: 771 TEDNVVLGLIAANVAIFMLWRYADPSFMMKNFTISVQNFTSGRVHTLITSAFSHMDIEHI 592
           + ++VVLGLI ANVA+FMLWR +D  FM+ NFTIS+ NF SGR+HTLITSAFSH+DI H+
Sbjct: 132 STNDVVLGLIIANVAVFMLWRISDHRFMLNNFTISLDNFKSGRIHTLITSAFSHIDIGHL 191

Query: 591 FSNMIGLYFFGTSIGRCFGPEFXXXXXXXXXXXGSIFYLVHHAFMSPISQGSGMWRVDPK 412
            SNMIGLYFFG +IGR FGPEF           GS+FYLVHHAFM+P S+G  MW ++P 
Sbjct: 192 ISNMIGLYFFGMNIGRVFGPEFLLKLYLAGAVVGSVFYLVHHAFMAPSSKGQQMWSINPS 251

Query: 411 KVPGLGASGAVNAIMLLDIFLFPTAIHYVNFLIPVPAILLGAILIGKDIWRMTENNSQIS 232
            +PGLGASGAVNAIMLLDIFLFP +  Y+ F IPVPAILLG  LIGKD+ R+ E + QIS
Sbjct: 252 AIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGIFLIGKDMLRIIEGDDQIS 311


>ref|XP_002890288.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297336130|gb|EFH66547.1| rhomboid family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 336

 Score =  248 bits (632), Expect = 3e-63
 Identities = 130/230 (56%), Positives = 161/230 (70%), Gaps = 4/230 (1%)
 Frame = -2

Query: 846 TQFPRRHFQVHRYNTSRNR-WKSWIP--TEDNVVLGLIAANVAIFMLWRYADPSFMMKNF 676
           +QFP++ F+  R++  + R WK W+   ++ +VVLGL+ AN  +FM+WR  +  FMMKNF
Sbjct: 103 SQFPKKGFEFERFSGFQRRGWKHWLQGLSDRDVVLGLVIANTGVFMMWRVFNQQFMMKNF 162

Query: 675 TISVQNFTSGRVHTLITSAFSHMDIEHIFSNMIGLYFFGTSIGRCFGPEFXXXXXXXXXX 496
            IS+ NFTSGR+HTLITSAFSH+DI HI SNMIGLYFFGTSI R FGP+F          
Sbjct: 163 MISLDNFTSGRLHTLITSAFSHIDIGHIVSNMIGLYFFGTSIARNFGPQFLLKLYLAGAL 222

Query: 495 XGSIFYLVHHAFMSPIS-QGSGMWRVDPKKVPGLGASGAVNAIMLLDIFLFPTAIHYVNF 319
            GS+FYL+HHA+M+  S +G G +  DP + PGLGASGAVNAIMLLDIFL PTA  Y+ F
Sbjct: 223 GGSVFYLIHHAYMATTSPKGQGAFMRDPSRTPGLGASGAVNAIMLLDIFLHPTATLYLEF 282

Query: 318 LIPVPAILLGAILIGKDIWRMTENNSQISXXXXXXXXXXXXXXXARIKKG 169
           +IPVPA+LLG  LIGKDI R+TE NS IS               ARI+KG
Sbjct: 283 IIPVPAMLLGIFLIGKDILRITEGNSNISGSAHLGGAAVAAIAWARIRKG 332


>ref|XP_002309495.1| predicted protein [Populus trichocarpa] gi|222855471|gb|EEE93018.1|
           predicted protein [Populus trichocarpa]
          Length = 242

 Score =  241 bits (614), Expect = 4e-61
 Identities = 125/214 (58%), Positives = 146/214 (68%), Gaps = 2/214 (0%)
 Frame = -2

Query: 804 TSRNRWKSWIP--TEDNVVLGLIAANVAIFMLWRYADPSFMMKNFTISVQNFTSGRVHTL 631
           ++R  W+SW    + DNVVLGLI AN A+FMLWR  D  FMM+NF IS+ NF SGR+HTL
Sbjct: 27  SNRRGWRSWFNRLSADNVVLGLIIANAAVFMLWRIEDQKFMMENFMISLDNFRSGRIHTL 86

Query: 630 ITSAFSHMDIEHIFSNMIGLYFFGTSIGRCFGPEFXXXXXXXXXXXGSIFYLVHHAFMSP 451
           +TSAFSH+DI HI  NMIGLYFFGT+I R FGPEF           GS+FYL+HH +M  
Sbjct: 87  VTSAFSHIDIGHIAFNMIGLYFFGTNIARTFGPEFLLKLYLAGAIGGSVFYLLHHGYMDL 146

Query: 450 ISQGSGMWRVDPKKVPGLGASGAVNAIMLLDIFLFPTAIHYVNFLIPVPAILLGAILIGK 271
            S+G GMW  D  + PGLGASGAVNAIMLLDIFL P A  Y +F+IPVPAILLG  LIGK
Sbjct: 147 SSKGQGMWARDSSRTPGLGASGAVNAIMLLDIFLNPRATLYFDFIIPVPAILLGIFLIGK 206

Query: 270 DIWRMTENNSQISXXXXXXXXXXXXXXXARIKKG 169
           D+ R+ E NS IS               ARIK+G
Sbjct: 207 DLLRVMEGNSNISGSAHLGGAAVAAIAWARIKRG 240


>ref|NP_564058.1| RHOMBOID-like protein 12 [Arabidopsis thaliana]
           gi|9795596|gb|AAF98414.1|AC026238_6 Hypothetical protein
           [Arabidopsis thaliana]
           gi|13877607|gb|AAK43881.1|AF370504_1 Unknown protein
           [Arabidopsis thaliana] gi|20148713|gb|AAM10247.1|
           unknown protein [Arabidopsis thaliana]
           gi|21592397|gb|AAM64348.1| unknown [Arabidopsis
           thaliana] gi|332191612|gb|AEE29733.1| RHOMBOID-like
           protein 12 [Arabidopsis thaliana]
          Length = 336

 Score =  238 bits (607), Expect = 3e-60
 Identities = 126/230 (54%), Positives = 157/230 (68%), Gaps = 4/230 (1%)
 Frame = -2

Query: 846 TQFPRRHFQVHRYNTSRNR-WKSWIP--TEDNVVLGLIAANVAIFMLWRYADPSFMMKNF 676
           +QFP++ F+  R++  + R WK W+   ++ +VVLGL+ AN  +F++WR  +  FMM NF
Sbjct: 103 SQFPKKGFEFQRFSGFQRRGWKHWLQGLSDRDVVLGLVIANAGVFVMWRVFNQQFMMNNF 162

Query: 675 TISVQNFTSGRVHTLITSAFSHMDIEHIFSNMIGLYFFGTSIGRCFGPEFXXXXXXXXXX 496
            IS+ NF SGR+HTLITSAFSH+DI HI SNMIGLYFFGTSI R FGP+F          
Sbjct: 163 MISLDNFKSGRLHTLITSAFSHIDIGHIVSNMIGLYFFGTSIARNFGPQFLLKLYLAGAL 222

Query: 495 XGSIFYLVHHAFMSPIS-QGSGMWRVDPKKVPGLGASGAVNAIMLLDIFLFPTAIHYVNF 319
            GS+FYL+HHA+M+  S +G G +  DP + PGLGASGAVNAIMLLDIFL P A  Y+ F
Sbjct: 223 GGSVFYLIHHAYMAATSPKGQGAFVRDPSRTPGLGASGAVNAIMLLDIFLHPRATLYLEF 282

Query: 318 LIPVPAILLGAILIGKDIWRMTENNSQISXXXXXXXXXXXXXXXARIKKG 169
            IPVPA+LLG  LIGKDI R+TE NS IS               ARI+KG
Sbjct: 283 FIPVPAMLLGIFLIGKDILRITEGNSNISGSAHLGGAAVAAIAWARIRKG 332