BLASTX nr result
ID: Cimicifuga21_contig00011452
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00011452
(236 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi... 153 1e-35
ref|XP_002532904.1| pentatricopeptide repeat-containing protein,... 137 7e-31
ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|2... 136 2e-30
gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indi... 132 2e-29
ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group] g... 131 5e-29
>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 153 bits (387), Expect = 1e-35
Identities = 73/78 (93%), Positives = 75/78 (96%)
Frame = -1
Query: 236 GELGEARRLFDEMPERDTVSWNTVLDGYVKAGEMNSAFELFEKMPERNVVSWSTMVSGYS 57
GELGEARRLFDEMPERDTVSWNT+LDGYVKAGEMN+AFELFEKMP RNVVSWSTMV GYS
Sbjct: 197 GELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYS 256
Query: 56 KAGDMDMARFLFDKMPVK 3
KAGDMDMAR LFDKMPVK
Sbjct: 257 KAGDMDMARILFDKMPVK 274
>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 604
Score = 137 bits (346), Expect = 7e-31
Identities = 64/78 (82%), Positives = 69/78 (88%)
Frame = -1
Query: 236 GELGEARRLFDEMPERDTVSWNTVLDGYVKAGEMNSAFELFEKMPERNVVSWSTMVSGYS 57
G+LG AR+LFDEM ERD VSWNT+LDGYVKAGEM+ AF LFEKMPERNVVSWSTMVSGY
Sbjct: 203 GDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYC 262
Query: 56 KAGDMDMARFLFDKMPVK 3
K GDM+MAR LFDKMP K
Sbjct: 263 KTGDMEMARMLFDKMPFK 280
Score = 77.4 bits (189), Expect = 1e-12
Identities = 33/75 (44%), Positives = 55/75 (73%)
Frame = -1
Query: 236 GELGEARRLFDEMPERDTVSWNTVLDGYVKAGEMNSAFELFEKMPERNVVSWSTMVSGYS 57
GE+ +A LF++MPER+ VSW+T++ GY K G+M A LF+KMP +N+V+W+ ++SG++
Sbjct: 234 GEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFA 293
Query: 56 KAGDMDMARFLFDKM 12
+ G A L+++M
Sbjct: 294 EKGLAKEATTLYNQM 308
>ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|222848341|gb|EEE85888.1|
predicted protein [Populus trichocarpa]
Length = 427
Score = 136 bits (342), Expect = 2e-30
Identities = 64/78 (82%), Positives = 69/78 (88%)
Frame = -1
Query: 236 GELGEARRLFDEMPERDTVSWNTVLDGYVKAGEMNSAFELFEKMPERNVVSWSTMVSGYS 57
GEL EA +LFDEMP +D VSWNT+LDGYVKAGEMN AF LFE MPERNVVSWSTMVSGY
Sbjct: 26 GELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFESMPERNVVSWSTMVSGYC 85
Query: 56 KAGDMDMARFLFDKMPVK 3
KAGDM+MAR LFD+MPVK
Sbjct: 86 KAGDMEMARMLFDRMPVK 103
Score = 76.3 bits (186), Expect = 2e-12
Identities = 36/75 (48%), Positives = 53/75 (70%)
Frame = -1
Query: 236 GELGEARRLFDEMPERDTVSWNTVLDGYVKAGEMNSAFELFEKMPERNVVSWSTMVSGYS 57
GE+ +A LF+ MPER+ VSW+T++ GY KAG+M A LF++MP +N+VSW+ +VSGY+
Sbjct: 57 GEMNKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYA 116
Query: 56 KAGDMDMARFLFDKM 12
G A F++M
Sbjct: 117 VKGLAKDAIRSFEQM 131
>gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 132 bits (333), Expect = 2e-29
Identities = 60/78 (76%), Positives = 70/78 (89%)
Frame = -1
Query: 236 GELGEARRLFDEMPERDTVSWNTVLDGYVKAGEMNSAFELFEKMPERNVVSWSTMVSGYS 57
GEL AR+LFDEMPE+DTVSWNT+LDGY KAGE+ +AFELF++MPERNVVSWSTMVSGY
Sbjct: 527 GELAGARKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYC 586
Query: 56 KAGDMDMARFLFDKMPVK 3
K GD++MAR +FDKMP K
Sbjct: 587 KKGDLEMARVIFDKMPGK 604
Score = 62.4 bits (150), Expect = 4e-08
Identities = 26/56 (46%), Positives = 40/56 (71%)
Frame = -1
Query: 236 GELGEARRLFDEMPERDTVSWNTVLDGYVKAGEMNSAFELFEKMPERNVVSWSTMV 69
GE+ A LF MPER+ VSW+T++ GY K G++ A +F+KMP +N+V+W+ M+
Sbjct: 558 GEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMM 613
Score = 58.5 bits (140), Expect = 5e-07
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = -1
Query: 188 DTVSWNTVLDGYVKAGEMNSAFELFEKMPERNVVSWSTMVSGYSKAGDMDMARFLFDKMP 9
DT N ++D Y K G + A ++F++MPER+VVSW+T ++ + G++ AR LFD+MP
Sbjct: 481 DTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMP 540
Query: 8 VK 3
K
Sbjct: 541 EK 542
>ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial
[Oryza sativa Japonica Group]
Length = 614
Score = 131 bits (330), Expect = 5e-29
Identities = 59/78 (75%), Positives = 69/78 (88%)
Frame = -1
Query: 236 GELGEARRLFDEMPERDTVSWNTVLDGYVKAGEMNSAFELFEKMPERNVVSWSTMVSGYS 57
GEL R+LFDEMPE+DTVSWNT+LDGY KAGE+ +AFELF++MPERNVVSWSTMVSGY
Sbjct: 208 GELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYC 267
Query: 56 KAGDMDMARFLFDKMPVK 3
K GD++MAR +FDKMP K
Sbjct: 268 KKGDLEMARVIFDKMPSK 285
Score = 73.2 bits (178), Expect = 2e-11
Identities = 34/75 (45%), Positives = 51/75 (68%)
Frame = -1
Query: 236 GELGEARRLFDEMPERDTVSWNTVLDGYVKAGEMNSAFELFEKMPERNVVSWSTMVSGYS 57
GE+ A LF MPER+ VSW+T++ GY K G++ A +F+KMP +N+V+W+ MVS +
Sbjct: 239 GEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACA 298
Query: 56 KAGDMDMARFLFDKM 12
+ G +D A LF +M
Sbjct: 299 QKGLVDEAGKLFAQM 313
Score = 57.0 bits (136), Expect = 2e-06
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = -1
Query: 188 DTVSWNTVLDGYVKAGEMNSAFELFEKMPERNVVSWSTMVSGYSKAGDMDMARFLFDKMP 9
DT N ++D Y K G + A ++F++MPER+VVSW+T ++ + G++ R LFD+MP
Sbjct: 162 DTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMP 221
Query: 8 VK 3
K
Sbjct: 222 EK 223