BLASTX nr result

ID: Cimicifuga21_contig00011102 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00011102
         (596 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24067.3| unnamed protein product [Vitis vinifera]              149   5e-34
ref|XP_002266058.1| PREDICTED: microtubule-associated protein SP...   149   5e-34
ref|XP_002527814.1| Microtubule-associated protein TORTIFOLIA1, ...   144   9e-33
ref|XP_002308133.1| predicted protein [Populus trichocarpa] gi|2...   140   2e-31
ref|XP_003517612.1| PREDICTED: microtubule-associated protein SP...   120   1e-25

>emb|CBI24067.3| unnamed protein product [Vitis vinifera]
          Length = 831

 Score =  149 bits (375), Expect = 5e-34
 Identities = 93/196 (47%), Positives = 116/196 (59%)
 Frame = +3

Query: 6    SNLVSSSNFETKCVTDGYDCFENSVLTSPTMMNHRSAGEVVFSEHLTSERLLERQSLDST 185
            SN+V   NFETK VT   D FE       T    + A E+   E +   ++ +R+SLDST
Sbjct: 437  SNVVD--NFETKFVTVSDD-FEGGRNLMGTNQRFK-AEEISSEEQIFLAKVQDRRSLDST 492

Query: 186  VTEVSVLGRQECCSQTRNEMSFIRKQLVEIETKQSNLMDLLQVFMGSTMDSLSTLKSKVL 365
            VTE+S    + CC QT NEM  IRKQL+EIE KQS+LMDLLQVF   TMDSLS ++SKVL
Sbjct: 493  VTELSSQPVRGCCLQTANEMVSIRKQLLEIENKQSSLMDLLQVFTTRTMDSLSMIQSKVL 552

Query: 366  GLEHSVDRIAQNLVQAXXXXXXXXXXXXXXXXXXXXPRYSVCTPRPSLDISNNQLSSMAK 545
            GLEH VDR+AQ+LV                      PR S CTPRPS+D+ N Q +  + 
Sbjct: 553  GLEHVVDRLAQDLVHGVKYSDLAGTKLLRKGQNVASPRLSTCTPRPSIDLPNKQATLTSM 612

Query: 546  HNKGVFGEAAFSRNRS 593
             N  ++ E  FSR+RS
Sbjct: 613  KNTEIWEERTFSRSRS 628


>ref|XP_002266058.1| PREDICTED: microtubule-associated protein SPIRAL2-like [Vitis
            vinifera]
          Length = 838

 Score =  149 bits (375), Expect = 5e-34
 Identities = 93/196 (47%), Positives = 116/196 (59%)
 Frame = +3

Query: 6    SNLVSSSNFETKCVTDGYDCFENSVLTSPTMMNHRSAGEVVFSEHLTSERLLERQSLDST 185
            SN+V   NFETK VT   D FE       T    + A E+   E +   ++ +R+SLDST
Sbjct: 437  SNVVD--NFETKFVTVSDD-FEGGRNLMGTNQRFK-AEEISSEEQIFLAKVQDRRSLDST 492

Query: 186  VTEVSVLGRQECCSQTRNEMSFIRKQLVEIETKQSNLMDLLQVFMGSTMDSLSTLKSKVL 365
            VTE+S    + CC QT NEM  IRKQL+EIE KQS+LMDLLQVF   TMDSLS ++SKVL
Sbjct: 493  VTELSSQPVRGCCLQTANEMVSIRKQLLEIENKQSSLMDLLQVFTTRTMDSLSMIQSKVL 552

Query: 366  GLEHSVDRIAQNLVQAXXXXXXXXXXXXXXXXXXXXPRYSVCTPRPSLDISNNQLSSMAK 545
            GLEH VDR+AQ+LV                      PR S CTPRPS+D+ N Q +  + 
Sbjct: 553  GLEHVVDRLAQDLVHGVKYSDLAGTKLLRKGQNVASPRLSTCTPRPSIDLPNKQATLTSM 612

Query: 546  HNKGVFGEAAFSRNRS 593
             N  ++ E  FSR+RS
Sbjct: 613  KNTEIWEERTFSRSRS 628


>ref|XP_002527814.1| Microtubule-associated protein TORTIFOLIA1, putative [Ricinus
            communis] gi|223532788|gb|EEF34566.1|
            Microtubule-associated protein TORTIFOLIA1, putative
            [Ricinus communis]
          Length = 840

 Score =  144 bits (364), Expect = 9e-33
 Identities = 90/199 (45%), Positives = 118/199 (59%), Gaps = 1/199 (0%)
 Frame = +3

Query: 3    VSNLVSSSNFETKCVTDGYDCFENSVLTSPTMMNHRSAGEVVFSEHLT-SERLLERQSLD 179
            VSNLV+  NFETK VT  ++  + S L      N   A + + +E  T S ++ +R+SLD
Sbjct: 442  VSNLVAD-NFETKFVTVSHEEGDMSKLKE---RNQCLAAQGINNEEQTYSAQIRDRRSLD 497

Query: 180  STVTEVSVLGRQECCSQTRNEMSFIRKQLVEIETKQSNLMDLLQVFMGSTMDSLSTLKSK 359
            STVTE S      CCSQ  NEM+ ++KQL+EIE KQSNLM++LQVF    MD+LS L+SK
Sbjct: 498  STVTETSFQPSHGCCSQMANEMACVQKQLLEIENKQSNLMEMLQVFSSGIMDNLSILRSK 557

Query: 360  VLGLEHSVDRIAQNLVQAXXXXXXXXXXXXXXXXXXXXPRYSVCTPRPSLDISNNQLSSM 539
            V  LEH VDRIAQ L+                      PR+S  TPRPS+DI N Q S +
Sbjct: 558  VSVLEHEVDRIAQALMHGARHSDSAISKLMKQNQSVSSPRFSTSTPRPSVDIRNRQSSLL 617

Query: 540  AKHNKGVFGEAAFSRNRSS 596
            A  N  ++ E  ++R+RSS
Sbjct: 618  AAKNSDIWEEKTYNRSRSS 636


>ref|XP_002308133.1| predicted protein [Populus trichocarpa] gi|222854109|gb|EEE91656.1|
            predicted protein [Populus trichocarpa]
          Length = 811

 Score =  140 bits (353), Expect = 2e-31
 Identities = 88/197 (44%), Positives = 113/197 (57%), Gaps = 1/197 (0%)
 Frame = +3

Query: 3    VSNLVSSSNFETKCVTDGYDCFENSVLTSPTMMNHRSAGEVVFSE-HLTSERLLERQSLD 179
            VSNLV++ NFETK VT  +   E      P   N + + E + SE  + S ++ +R+S+D
Sbjct: 435  VSNLVTN-NFETKFVTVSHGLLEEGSSFKPRGRNQQFSSEGINSEAQIYSAQMRDRRSID 493

Query: 180  STVTEVSVLGRQECCSQTRNEMSFIRKQLVEIETKQSNLMDLLQVFMGSTMDSLSTLKSK 359
            S VTE S      CCSQ  +EM+ IRKQL+E+E KQ NLM+LLQVF    MD+LS L+SK
Sbjct: 494  SAVTENSFQTLHGCCSQVASEMACIRKQLLEMENKQLNLMELLQVFSTGVMDNLSILQSK 553

Query: 360  VLGLEHSVDRIAQNLVQAXXXXXXXXXXXXXXXXXXXXPRYSVCTPRPSLDISNNQLSSM 539
            V GLEH VDRI Q LVQ                     PR S  TPRPS+DI N Q S +
Sbjct: 554  VSGLEHEVDRIGQVLVQDGRRSDSAISRLMKQNQTVSSPRPSTYTPRPSVDIRNRQSSLL 613

Query: 540  AKHNKGVFGEAAFSRNR 590
            +  N  ++    FSR+R
Sbjct: 614  SAKNSDIWEGKNFSRSR 630


>ref|XP_003517612.1| PREDICTED: microtubule-associated protein SPIRAL2-like [Glycine
           max]
          Length = 805

 Score =  120 bits (302), Expect = 1e-25
 Identities = 74/195 (37%), Positives = 109/195 (55%), Gaps = 5/195 (2%)
 Frame = +3

Query: 21  SSNFETKCVTDGYDCFENSVLTSPTMMNHRSAGEVVFSEHLTSERLLERQ---SLDSTVT 191
           + NFETK ++  +DCF   +   P   + R      FSE +TS+  ++ Q   S DSTVT
Sbjct: 418 TDNFETKFLSASHDCF---IQKMPIARSQR------FSEEITSDERVKMQHPTSSDSTVT 468

Query: 192 EVSVLGRQECCSQTRNEMSFIRKQLVEIETKQSNLMDLLQVFMGSTMDSLSTLKSKVLGL 371
           E +     ECC Q  NEM  I+ QL +IE KQ+N+M  LQ+F    MD+LST++S++ GL
Sbjct: 469 EPTHQTAHECCMQMANEMICIQNQLSDIEIKQANMMHQLQMFTTGIMDALSTIQSRITGL 528

Query: 372 EHSVDRIAQNLVQAXXXXXXXXXXXXXXXXXXXXPRYSVC--TPRPSLDISNNQLSSMAK 545
           E+  DR++Q  +Q                     PR+S+C  TPRPS++I+N Q  SM+ 
Sbjct: 529 ENVFDRLSQESLQRGRHSYSENSKLGRQSENVASPRFSICTPTPRPSVEINNKQSDSMSV 588

Query: 546 HNKGVFGEAAFSRNR 590
            N   + + AFSR++
Sbjct: 589 KNSESWEKKAFSRSQ 603


Top