BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00011078
         (3789 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...  1483   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1476   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1442   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1437   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1436   0.0  

>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score = 1483 bits (3839), Expect = 0.0
 Identities = 722/1102 (65%), Positives = 870/1102 (78%)
 Frame = +3

Query: 144  ISRTIQVSGFPSHVSAQVVKEFLETHTGDGTVYALKIRQTKSKGPNPRAFAVVQFTTIKS 323
            +S+T++VSGFPS  +A  V+ FLE+HTG GTV ALKIR+ ++ G   R +A+VQFTT ++
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGA--RKYAIVQFTTTRA 58

Query: 324  AETISSLISHRLYYGSSYLNVRKMERDIVPKPRTMMLSLDVTALHFGCQVSREQFKVLWK 503
            AE I SL + RL+YG SYLN R M+RDI+P+PR+ + +++   LHFG Q S+E+F  +W 
Sbjct: 59   AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118

Query: 504  RANAVANFGFGLRKVELLLSHCRVEYKFEFSYDSIWQIVERCPPNLNAKFLVIQVFAAPR 683
              N   NFG G+RK+   LSH   EYK    +++IWQI    P     K+L+IQ++ APR
Sbjct: 119  GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178

Query: 684  VYEKLQCSSGGIYGDPDLNFFMDTPDDQWIRATDFTXXXXXXXXXALCLELPLDCELSSI 863
            +YE+   SS  ++ DP LN+F D PD+QW+R TDFT         +LCLELP   +L + 
Sbjct: 179  IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNF 238

Query: 864  RENFHYYRKDVGKFLLESGFTFSRSLELVPIVGPPQGLELPYNILFKVNSLVQNGCLAGP 1043
             ENF YY+++ G F+LESG TFSR+ +LVPIVGP  G+ LPYNILF+VN LVQNGCLAG 
Sbjct: 239  NENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGS 298

Query: 1044 TLDVTFFRLLHPHYVPIVHIECALEKLYHSKECCYEPVKWLKEQYTRYRTSKKFPKPPAI 1223
             LD  F+RL+ P+ +P+  IE ALEKLYH KECCYEP KW  EQY +Y TS   P+ P +
Sbjct: 299  MLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVL 358

Query: 1224 SLDDGLVYTRRVQVTPLKVYFCGPEVNVSNRVIRHYQQYIDNFIRVSFVDEDWEKMRSTD 1403
            SLD GLVY  +VQ+TP KV+FCGPEVNVSNRV+R Y++ IDNF+RVSFVDE+ EK+ STD
Sbjct: 359  SLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTD 418

Query: 1404 LSPRATSKNGDRRHTTIYKRILSTLRDGIVIGDKKFEFLAFSSSQLRDNSAWMFASDNGV 1583
            +SPR +S+N + R T IY RILSTL++GIVIGDKKFEFLAFSSSQLR+NS WMFAS  G+
Sbjct: 419  VSPRTSSRN-ELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477

Query: 1584 TAASIRKWMGDFHEIRNVAKYAARLGQSFSSSTETLTVGRDEFEIIPDVELVRNGQKYVF 1763
            TAA IR WMG FH+IRNVA+YAARLGQSF SSTETL+V   E EIIPD+E+ R G +Y+F
Sbjct: 478  TAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLF 537

Query: 1764 SDGIGKISTEFARRVAKKCGINGSTPSSFQIRYGGYKGVVAVDPNSVMKLSLRKSMSKYT 1943
            SDGIGKIS EFAR+VA KCG  G TPS+FQIRY GYKGVVAVDP S  KLSLR+SM KY 
Sbjct: 538  SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYE 597

Query: 1944 SINTKLDVLTWSKFQPCFLNRQIITLLSTLGVKDHIFEKKQKEAVDQLDMILTDPLKAQD 2123
            S NTKLDVL  SK+QPCFLNRQ+ITLLSTLGV DH FE+KQ+EAVDQLD +LTDPL+AQ+
Sbjct: 598  SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQE 657

Query: 2124 ALEIMSPGENVNVLKEMLKCGYKPNVEPYLSMMLQTFRALKLLELRKKSKIFVPNARSMM 2303
            ALE+MSPGEN N+LKEML CGY+P+ EP+LSMMLQTFRA KLLELR K++IF+PN RSMM
Sbjct: 658  ALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 717

Query: 2304 GCLDETSTLEYGQVFVQVSRMGLERFHDNVPSTLDVNESDRRSFIVEGKVIVAKNPCLHP 2483
            GCLDET TLE+GQVFV+ S       +D+  S +       + ++++G V+VAKNPCLHP
Sbjct: 718  GCLDETRTLEHGQVFVKFSGSRFRNLYDS--SDMFSERGRGQCYLIKGSVVVAKNPCLHP 775

Query: 2484 GDVRTLQAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVSWDRELIPPRQID 2663
            GD+R L+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP +QI 
Sbjct: 776  GDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQIS 835

Query: 2664 PMDYNPEPTVLLDHDVMIEEVQEYFTNYIVNDSLGIIANAHTAFADREPAMAESDACIKL 2843
            PMDY PEP + LDHDV IEEV+EYFTNYIVNDSLG+IANAHTA AD+E   A S+ C++L
Sbjct: 836  PMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVEL 895

Query: 2844 ARLFSIAVDFPKTGVPAEIPPHLHVKLYPDFMDKPDKLTYESTRVIGKLYRAVKDIAPQM 3023
            AR FSIAVDFPKTGVPAEIP +L  + YPDFM+KPDK +YES  VIGKL+R VKDIAP+ 
Sbjct: 896  ARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRT 955

Query: 3024 NCIKSFTKEVARRTYDYDMEVDGFRDYIDDAYYYKGEYDFKLGNLMEYYGIKTEPEILGG 3203
            + I+SFT +VAR+ YD DMEVDGF DYIDDA+YYK  YD+KLGNLMEYYGIKTE E+L G
Sbjct: 956  SSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSG 1015

Query: 3204 SIIKMSKSFDIRKDVETIGLAVRSLKKEARAWFEQTSSSSVSENDNVYAKASAWYHVTYH 3383
            S +KMSKSF  ++D E IG+AVRSLKKEAR+WF +  S   S+ D+V AKASAWYHVTYH
Sbjct: 1016 SFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYH 1075

Query: 3384 PDYWGCYNEGMNRDHFLSFPWC 3449
             +YWGCYNEGMNRDHFLSFPWC
Sbjct: 1076 HNYWGCYNEGMNRDHFLSFPWC 1097


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1476 bits (3821), Expect = 0.0
 Identities = 743/1104 (67%), Positives = 865/1104 (78%), Gaps = 2/1104 (0%)
 Frame = +3

Query: 144  ISRTIQVSGFPSHVSAQVVKEFLETHTGDGTVYALKIRQTKSKGPNPRAFAVVQFTTIKS 323
            +S+TIQV GFPS VSA  +KEFLE +TG+GT+ AL+I+Q +S        A VQFT+ + 
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGAS--MTHAKVQFTSFEL 58

Query: 324  AETISSLISHRLYYGSSYLNVRKMERDIVPKPRTMMLSLDVTALHFGCQVSREQFKVLWK 503
            AE I +L   +++YG +YL  R+M+ DI+PKPR  + S+D   LHFGCQ+S E+F VLWK
Sbjct: 59   AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118

Query: 504  RANAVANFGFGLRKVELLLSHCRVEYKFEFSYDSIWQIVERCPPNLNAKFLVIQVFAAPR 683
              N    FG GLRK    LSH   EYK E SY++IWQI  + P     KFL+IQ+  AP+
Sbjct: 119  AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178

Query: 684  VYEKLQCSSGGIYGDPDLNF-FMDTPDDQWIRATDFTXXXXXXXXXALCLELPLDCELSS 860
            +YEK           P L++ F + PDDQW+R  DFT         ALCLELP   +L +
Sbjct: 179  IYEK---------DVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPN 229

Query: 861  IRENFHYYRKDVGKFLLESGFTFSRSLELVPIVGPPQGLELPYNILFKVNSLVQNGCLAG 1040
             RENF YY+++ GKF+LESG ++S +L LVPI+GPPQG  LP+ ILFK+N+LVQNGCL+G
Sbjct: 230  FRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSG 289

Query: 1041 PTLDVTFFRLLHPHYVPIVHIECALEKLYHSKECCYEPVKWLKEQYTRYRTSKKFPKPPA 1220
            PTLD +FFRL+ P   PI  IE ALEKLYH KECCYEPV+WL EQY  Y   K     PA
Sbjct: 290  PTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY-VKKPVAGSPA 348

Query: 1221 ISLDDGLVYTRRVQVTPLKVYFCGPEVNVSNRVIRHYQQYIDNFIRVSFVDEDWEKMRST 1400
            ISLD GLVY RRVQ+TP KVYFCGPEVNVSNRV+R+Y + IDNF+RVSF+DE+ EK+ ST
Sbjct: 349  ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHST 408

Query: 1401 DLSPRATSKNGDRRHTTIYKRILSTLRDGIVIGDKKFEFLAFSSSQLRDNSAWMFASDNG 1580
             +SPR  SK G  R T +Y+RILS L++GIVIGDKKF+FLAFSSSQLRDNSAWMFAS  G
Sbjct: 409  VISPRM-SKEG--RRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPG 465

Query: 1581 VTAASIRKWMGDFHEIRNVAKYAARLGQSFSSSTETLTVGRDEFEIIPDVELVRNGQKYV 1760
            +TAA IR WMGDF +IRNVAKYAARLGQSFSSS ETL V +DE E IPD+E+ +    YV
Sbjct: 466  LTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYV 525

Query: 1761 FSDGIGKISTEFARRVAKKCGINGSTPSSFQIRYGGYKGVVAVDPNSVMKLSLRKSMSKY 1940
            FSDGIGKIS + A RVA KCG   STPS+FQIRYGGYKGVVAVDP S  KLSLRKSM KY
Sbjct: 526  FSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKY 585

Query: 1941 TSINTKLDVLTWSKFQPCFLNRQIITLLSTLGVKDHIFEKKQKEAVDQLDMILTDPLKAQ 2120
             S NT LDVL WSK+QP FLNRQ+ITLLSTLGVKDH+FEKKQ+ AVDQLD IL DP+ AQ
Sbjct: 586  ESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQ 645

Query: 2121 DALEIMSPGENVNVLKEMLKCGYKPNVEPYLSMMLQTFRALKLLELRKKSKIFVPNARSM 2300
            +ALE+MSPGEN NVLKEML CGYKP+ EP+LSMMLQTFRA KLLELR K++IFVPN RSM
Sbjct: 646  EALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSM 705

Query: 2301 MGCLDETSTLEYGQVFVQVSRMG-LERFHDNVPSTLDVNESDRRSFIVEGKVIVAKNPCL 2477
            MGCLDET TLEYG+VFVQ+S  G  + F D++      +  D  +FI+EGK++VAKNPCL
Sbjct: 706  MGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHD--NFILEGKIVVAKNPCL 763

Query: 2478 HPGDVRTLQAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVSWDRELIPPRQ 2657
            HPGDVR L AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDR+LIPP+Q
Sbjct: 764  HPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQ 823

Query: 2658 IDPMDYNPEPTVLLDHDVMIEEVQEYFTNYIVNDSLGIIANAHTAFADREPAMAESDACI 2837
            I+PMDY P PT +LDHDVMIEEV+EYFTNYIVNDSLGIIANAHT FAD+E   A  D C 
Sbjct: 824  INPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCT 883

Query: 2838 KLARLFSIAVDFPKTGVPAEIPPHLHVKLYPDFMDKPDKLTYESTRVIGKLYRAVKDIAP 3017
            +LA+LFSIAVDFPKTGVPAEIP +L VK YPDFM+K DK TYES  VIGKL+R VKDIAP
Sbjct: 884  ELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAP 943

Query: 3018 QMNCIKSFTKEVARRTYDYDMEVDGFRDYIDDAYYYKGEYDFKLGNLMEYYGIKTEPEIL 3197
                I+SFT++VAR++YD DMEV GF DY+ DA+YYK EYD+KLGNLM+YYGIKTE EIL
Sbjct: 944  HNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEIL 1003

Query: 3198 GGSIIKMSKSFDIRKDVETIGLAVRSLKKEARAWFEQTSSSSVSENDNVYAKASAWYHVT 3377
             GSI++MSKSFD RKD E IGLAV+SL+KEAR WF +  S + SE D+VYAKASAWYHVT
Sbjct: 1004 SGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVT 1063

Query: 3378 YHPDYWGCYNEGMNRDHFLSFPWC 3449
            YHPDYWGCYNEGM+RDHFLSFPWC
Sbjct: 1064 YHPDYWGCYNEGMDRDHFLSFPWC 1087


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1442 bits (3734), Expect = 0.0
 Identities = 714/1102 (64%), Positives = 859/1102 (77%)
 Frame = +3

Query: 144  ISRTIQVSGFPSHVSAQVVKEFLETHTGDGTVYALKIRQTKSKGPNPRAFAVVQFTTIKS 323
            + +TIQV GF S VSA  VK FLE +TG  TVYALKIRQ K  G   RAFA+VQFT    
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57

Query: 324  AETISSLISHRLYYGSSYLNVRKMERDIVPKPRTMMLSLDVTALHFGCQVSREQFKVLWK 503
            A  I  L + RLYYG SYL  R+ME DIVPKPR  + +++   ++FGCQVS E+F VLWK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117

Query: 504  RANAVANFGFGLRKVELLLSHCRVEYKFEFSYDSIWQIVERCPPNLNAKFLVIQVFAAPR 683
              N   NFG G+RK+E LLS+C  +YK E  Y++IWQI  RCP +  +K L+IQ+F APR
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 684  VYEKLQCSSGGIYGDPDLNFFMDTPDDQWIRATDFTXXXXXXXXXALCLELPLDCELSSI 863
            +YEK   +S  ++ DP LN+F D PDDQW+R TDFT          L LELP + +L + 
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNF 237

Query: 864  RENFHYYRKDVGKFLLESGFTFSRSLELVPIVGPPQGLELPYNILFKVNSLVQNGCLAGP 1043
            RENF YY+++ G+ +LESG ++S +L LVPIV P + ++LP+ ILFKVN LVQNGC+ GP
Sbjct: 238  RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297

Query: 1044 TLDVTFFRLLHPHYVPIVHIECALEKLYHSKECCYEPVKWLKEQYTRYRTSKKFPKPPAI 1223
             LD TF+RL+ P  +  V+I+ ALEKLY+ +ECCYEP +WL E+Y  +  S+K+   P I
Sbjct: 298  ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357

Query: 1224 SLDDGLVYTRRVQVTPLKVYFCGPEVNVSNRVIRHYQQYIDNFIRVSFVDEDWEKMRSTD 1403
            SLD+GLVY RRVQ+TP +VYFCGPE+NVSNRV+R +   IDNF+R+SFVDE+ EK+ ST+
Sbjct: 358  SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417

Query: 1404 LSPRATSKNGDRRHTTIYKRILSTLRDGIVIGDKKFEFLAFSSSQLRDNSAWMFASDNGV 1583
            +  R        R T IYKRILSTLR+GIVIG+K+FEFLAFSSSQLR+NSAWMFAS  G+
Sbjct: 418  VQARG-------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470

Query: 1584 TAASIRKWMGDFHEIRNVAKYAARLGQSFSSSTETLTVGRDEFEIIPDVELVRNGQKYVF 1763
            TAA IR WMG+F +IRNVAKYAARLGQSFSSSTETL+V +DE  +IPD+E++++G KYVF
Sbjct: 471  TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530

Query: 1764 SDGIGKISTEFARRVAKKCGINGSTPSSFQIRYGGYKGVVAVDPNSVMKLSLRKSMSKYT 1943
            SDGIGKIS EFA++VA KC + G TPS+FQIR GG+KGVVA+DP S  KLSLRKSM KY 
Sbjct: 531  SDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590

Query: 1944 SINTKLDVLTWSKFQPCFLNRQIITLLSTLGVKDHIFEKKQKEAVDQLDMILTDPLKAQD 2123
            S NTKLDVL WSK+QPCFLNRQ+ITLLSTLGV D  FEKKQ+E VDQL+ +LTDPL+AQ+
Sbjct: 591  SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQE 650

Query: 2124 ALEIMSPGENVNVLKEMLKCGYKPNVEPYLSMMLQTFRALKLLELRKKSKIFVPNARSMM 2303
            ALE+MSPGEN N+LKEML CGYKP+ EP+LSMML+TFRA KLLELR K++IFV   RSMM
Sbjct: 651  ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710

Query: 2304 GCLDETSTLEYGQVFVQVSRMGLERFHDNVPSTLDVNESDRRSFIVEGKVIVAKNPCLHP 2483
            GCLDET TL YGQVFVQ S                 + S+RR FIV+GKVIVAKNPCLHP
Sbjct: 711  GCLDETRTLNYGQVFVQFSG----------------SRSERR-FIVQGKVIVAKNPCLHP 753

Query: 2484 GDVRTLQAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVSWDRELIPPRQID 2663
            GDVR L+AVNVP LHHMVDCVVFPQKG+RPHPNECSGSDLDGD+YFV WD ELIP +QID
Sbjct: 754  GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813

Query: 2664 PMDYNPEPTVLLDHDVMIEEVQEYFTNYIVNDSLGIIANAHTAFADREPAMAESDACIKL 2843
            PMDY+P  T  LDH+V IEE++EYFTNYIVNDSLGII+NAHTAFADREP  A S  C++L
Sbjct: 814  PMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLEL 873

Query: 2844 ARLFSIAVDFPKTGVPAEIPPHLHVKLYPDFMDKPDKLTYESTRVIGKLYRAVKDIAPQM 3023
            A+LFSIAVDFPKTGVPAEIP  L VK YPDFM+KPDK +Y+S  VIGKL+R VK++AP  
Sbjct: 874  AKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNE 933

Query: 3024 NCIKSFTKEVARRTYDYDMEVDGFRDYIDDAYYYKGEYDFKLGNLMEYYGIKTEPEILGG 3203
              IK  T+E  +R YD DMEV+GF DYIDDA+++K +YD+KLGNLM+YYG+KTE EILGG
Sbjct: 934  CSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGG 993

Query: 3204 SIIKMSKSFDIRKDVETIGLAVRSLKKEARAWFEQTSSSSVSENDNVYAKASAWYHVTYH 3383
             I+KMS+SF  ++D E I +AVRSL+KEAR+WF +  S    E D+ YAKASAWY+VTYH
Sbjct: 994  GIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYH 1053

Query: 3384 PDYWGCYNEGMNRDHFLSFPWC 3449
            P YWG YNEGMNRDHFLSFPWC
Sbjct: 1054 PSYWGQYNEGMNRDHFLSFPWC 1075


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1125

 Score = 1437 bits (3721), Expect = 0.0
 Identities = 723/1108 (65%), Positives = 866/1108 (78%), Gaps = 6/1108 (0%)
 Frame = +3

Query: 144  ISRTIQVSGFPSHVSAQVVKEFLETHTGDGTVYALKIRQTKSKGPNPRAFAVVQFTTIKS 323
            + +TI++ GFP+ V+   VK F+E +TG+GTV+A+K+R    KG  PRAFA++QFTT  S
Sbjct: 1    MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRH--GKGRVPRAFAIIQFTTANS 58

Query: 324  AETISSL---ISHRLYYGSSYLNVRKMERDIVPKPRTMMLSLDVTALHFGCQVSREQFKV 494
            A ++ S    I   L YG+SYL  R+MERDIVP+PR  + SLD   L FGCQ+S+ +F V
Sbjct: 59   ATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSV 118

Query: 495  LWKRANAVANFGFGLRKVELLLSHCRVEYKFEFSYDSIWQIVERCPPNLNAKFLVIQVFA 674
            LWK+ + + NFG G+RK+  L SH  V+YK E SY++IW+I    P N   ++L+IQ+  
Sbjct: 119  LWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLG 178

Query: 675  APRVYEKLQCSSGGIYGDPDLNFFMDTPDDQWIRATDFTXXXXXXXXXALCLELPLDCEL 854
            APRV+E    +S  I+ DP  NFF D PD+QWIRA DFT         A+CLELP   +L
Sbjct: 179  APRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQL 238

Query: 855  SSIRENFHYYRKDVGKFLLESGFTFSRSLELVPIVGPPQGLELPYNILFKVNSLVQNGCL 1034
             + RENF YY +   ++ L++G  FS++  LVPIV PP G+++ Y+ILFKVNSLVQ+ CL
Sbjct: 239  PNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACL 298

Query: 1035 AGPTLDVTFFRLLHPHYVPIVHIECALEKLYHSKECCYEPVKWLKEQYTRYRTSKKFPKP 1214
            AGP LD  F+RL+ P  +P   IE ALEK+Y+SKE CYEP KWL +QY  Y  SK  P+ 
Sbjct: 299  AGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRS 358

Query: 1215 PAISLDDGLVYTRRVQVTPLKVYFCGPEVNVSNRVIRHYQQYIDNFIRVSFVDEDWEKMR 1394
            PAISLD GLVY RRVQ+TP KVYFCGPE+NVSNRV+RH++++IDNF+RVSFVDE+ +K+ 
Sbjct: 359  PAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKLF 418

Query: 1395 STDLSPRATSKNGDRRHTTIYKRILSTLRDGIVIGDKKFEFLAFSSSQLRDNSAWMFA-S 1571
            STDLS R+ +K      T IY RILS L++GIV+GDKKFEFLAFSSSQLR+NS WMFA +
Sbjct: 419  STDLSSRSQNKK-----TEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPT 473

Query: 1572 DNGVTAASIRKWMGDFHEIRNVAKYAARLGQSFSSSTETLTVGRDEFEIIPDVE-LVRNG 1748
            + G TAA IRKWMG+F +IRNVAKYAARLGQSF SSTETL+V RDE EIIPDV+ L  +G
Sbjct: 474  ETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDG 533

Query: 1749 QKYVFSDGIGKISTEFARRVAKKCGINGSTPSSFQIRYGGYKGVVAVDPNSVMKLSLRKS 1928
             +YVFSDGIGKIS EFA++VAKKCG +  TPS+FQIRYGGYKGVVAVDP S  KLSLRKS
Sbjct: 534  NEYVFSDGIGKISLEFAQKVAKKCGYD-CTPSAFQIRYGGYKGVVAVDPKSCYKLSLRKS 592

Query: 1929 MSKYTSINTKLDVLTWSKFQPCFLNRQIITLLSTLGVKDHIFEKKQKEAVDQLDMILTDP 2108
            M KY S NTKLDVL  SKFQPC+LNRQ+I+LLSTLG+KD +FEKKQ+E V+QL+ ILTD 
Sbjct: 593  MRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDS 652

Query: 2109 LKAQDALEIMSPGENVNVLKEMLKCGYKPNVEPYLSMMLQTFRALKLLELRKKSKIFVPN 2288
            LKAQ+ L++MS GE  NVLKEML CGYKPN EP+LSMMLQTFRA KLLELR KS+IF+P 
Sbjct: 653  LKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPK 712

Query: 2289 ARSMMGCLDETSTLEYGQVFVQVSRMGLERFHDNVPSTLDVNESDRRSFIVEGKVIVAKN 2468
             R+MMGCLDET TLEYGQVFVQ S   L+   D+  S  D+     ++++V+GKV+VAKN
Sbjct: 713  GRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFS-YDLP----KNYMVKGKVVVAKN 767

Query: 2469 PCLHPGDVRTLQAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVSWDRELIP 2648
            PCLHPGDVR LQAV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP
Sbjct: 768  PCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIP 827

Query: 2649 PRQIDPMDYNPEPTVLLDHDVMIEEVQEYFTNYIVNDSLGIIANAHTAFADREPAMAESD 2828
             R IDPMDY    TV LDHDVMIEEV+EYF NYIVNDSLGIIANAHT FAD+E   A SD
Sbjct: 828  SRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSD 887

Query: 2829 ACIKLARLFSIAVDFPKTGVPAEIPPHLHVKLYPDFMDKPDKLTYESTRVIGKLYRAVKD 3008
             C+KLARLFS AVDFPKTGVPA IPP LHVK YPDFM+KPDK TY+S  VIGKL+R VK+
Sbjct: 888  QCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKE 947

Query: 3009 IAPQMNCIKSFTKEVARRTYDYDMEVDGFRDYIDDAYYYKGEYDFKLGNLMEYYGIKTEP 3188
            I+     I SFTK VAR +YD++MEVDGF DY+DDA+Y+K  YD+KLGNLM+YYGIKTE 
Sbjct: 948  ISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEA 1007

Query: 3189 EILGGSIIKMSKSFDIRKDVETIGLAVRSLKKEARAWFEQTSSSSV-SENDNVYAKASAW 3365
            EILGG+I+KMSKSF+ R+D E I +AVRSL+KEARAWF + SS  V S + +VYAKASAW
Sbjct: 1008 EILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASAW 1067

Query: 3366 YHVTYHPDYWGCYNEGMNRDHFLSFPWC 3449
            YHVTYHP YWGCYNEGMNRDH+LSF WC
Sbjct: 1068 YHVTYHPSYWGCYNEGMNRDHYLSFSWC 1095


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1436 bits (3717), Expect = 0.0
 Identities = 710/1102 (64%), Positives = 857/1102 (77%)
 Frame = +3

Query: 144  ISRTIQVSGFPSHVSAQVVKEFLETHTGDGTVYALKIRQTKSKGPNPRAFAVVQFTTIKS 323
            + +TIQV GF S VSA  VK FLE +TG  TVYALKIRQ K  G   RAFA+VQFT    
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57

Query: 324  AETISSLISHRLYYGSSYLNVRKMERDIVPKPRTMMLSLDVTALHFGCQVSREQFKVLWK 503
            A  I  L + RLYYG SYL  R+ME DIVPKPR  + +++   ++F C VS E+F VLWK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117

Query: 504  RANAVANFGFGLRKVELLLSHCRVEYKFEFSYDSIWQIVERCPPNLNAKFLVIQVFAAPR 683
              N   NFG G+RK+E LLS+C  +YK E  Y++IWQI  RCP +  +K L+IQ+F APR
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 684  VYEKLQCSSGGIYGDPDLNFFMDTPDDQWIRATDFTXXXXXXXXXALCLELPLDCELSSI 863
            +YEK   +S  ++ DP LN+F D PDDQW+R TDFT          LCLELP + +L + 
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNF 237

Query: 864  RENFHYYRKDVGKFLLESGFTFSRSLELVPIVGPPQGLELPYNILFKVNSLVQNGCLAGP 1043
            RENF YY+++ G+ +LESG ++S +L LVPIV P + ++LP+ ILFKVN LVQNGC+ GP
Sbjct: 238  RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297

Query: 1044 TLDVTFFRLLHPHYVPIVHIECALEKLYHSKECCYEPVKWLKEQYTRYRTSKKFPKPPAI 1223
             LD TF+RL+ P  +  V+I+ ALEKLY+ +ECCYEP +WL E+Y  +  S+K+   P I
Sbjct: 298  ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357

Query: 1224 SLDDGLVYTRRVQVTPLKVYFCGPEVNVSNRVIRHYQQYIDNFIRVSFVDEDWEKMRSTD 1403
            SLD+GLVY RRVQ+TP +VYFCGPE+NVSNRV+R +   IDNF+R+SFVDE+ EK+ ST+
Sbjct: 358  SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417

Query: 1404 LSPRATSKNGDRRHTTIYKRILSTLRDGIVIGDKKFEFLAFSSSQLRDNSAWMFASDNGV 1583
            +  R        R T IYKRILSTLR+GIVIG+K+FEFLAFSSSQLR+NSAWMFAS  G+
Sbjct: 418  VQARG-------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470

Query: 1584 TAASIRKWMGDFHEIRNVAKYAARLGQSFSSSTETLTVGRDEFEIIPDVELVRNGQKYVF 1763
            TAA IR WMG+F +IRNVAKYAARLGQSFSSSTETL+V +DE  +IPD+E++++G KYVF
Sbjct: 471  TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530

Query: 1764 SDGIGKISTEFARRVAKKCGINGSTPSSFQIRYGGYKGVVAVDPNSVMKLSLRKSMSKYT 1943
             DGIGKIS EFA++VA KC + G TPS+FQIR GG+KGVVA+DP S  KLSLRKSM KY 
Sbjct: 531  PDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590

Query: 1944 SINTKLDVLTWSKFQPCFLNRQIITLLSTLGVKDHIFEKKQKEAVDQLDMILTDPLKAQD 2123
            S NTKLDVL WSK+QPCFLNRQ+ITLLSTLGV D+ FEKKQ+E VDQL+ +LTDPL+AQ+
Sbjct: 591  SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQE 650

Query: 2124 ALEIMSPGENVNVLKEMLKCGYKPNVEPYLSMMLQTFRALKLLELRKKSKIFVPNARSMM 2303
            ALE+MSPGEN N+LKEML CGYKP+ EP+LSMML+TFRA KLLELR K++IFV   RSMM
Sbjct: 651  ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710

Query: 2304 GCLDETSTLEYGQVFVQVSRMGLERFHDNVPSTLDVNESDRRSFIVEGKVIVAKNPCLHP 2483
            GCLDET TL YGQVFVQ S                 + S+RR FIV+GKVIVAKNPCLHP
Sbjct: 711  GCLDETRTLNYGQVFVQFSG----------------SRSERR-FIVQGKVIVAKNPCLHP 753

Query: 2484 GDVRTLQAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVSWDRELIPPRQID 2663
            GDVR L+AVNVP LHHMVDCVVFPQKG+RPHPNECSGSDLDGD+YFV WD ELIP +QID
Sbjct: 754  GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813

Query: 2664 PMDYNPEPTVLLDHDVMIEEVQEYFTNYIVNDSLGIIANAHTAFADREPAMAESDACIKL 2843
            PMDY+P  T  LDH+V IEE++EYFTNYIVNDSLGII+NAHTAFADREP  A S  C++L
Sbjct: 814  PMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLEL 873

Query: 2844 ARLFSIAVDFPKTGVPAEIPPHLHVKLYPDFMDKPDKLTYESTRVIGKLYRAVKDIAPQM 3023
            A+LFSIAVDFPKTGVPAEIP  L VK +PDFM+KPDK +Y+S  VIGKL+R VK++AP  
Sbjct: 874  AKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNE 933

Query: 3024 NCIKSFTKEVARRTYDYDMEVDGFRDYIDDAYYYKGEYDFKLGNLMEYYGIKTEPEILGG 3203
              IK  T+E  +R YD DMEV+GF DYIDDA++YK +YD+KLGNLM+YYG+KTE EIL G
Sbjct: 934  CSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSG 993

Query: 3204 SIIKMSKSFDIRKDVETIGLAVRSLKKEARAWFEQTSSSSVSENDNVYAKASAWYHVTYH 3383
             I+KMS+SF  ++D E+I +AVRSL+KEAR+WF +  S    E D+ YAKASAWY+VTYH
Sbjct: 994  GIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYH 1053

Query: 3384 PDYWGCYNEGMNRDHFLSFPWC 3449
              YWG YNEGMNRDHFLSFPWC
Sbjct: 1054 HSYWGQYNEGMNRDHFLSFPWC 1075