BLASTX nr result
ID: Cimicifuga21_contig00009812
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00009812
(1728 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|2... 164 9e-38
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g... 147 1e-32
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g... 144 6e-32
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g... 144 6e-32
ref|XP_003612169.1| F-box family protein [Medicago truncatula] g... 142 2e-31
>ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|222833916|gb|EEE72393.1|
predicted protein [Populus trichocarpa]
Length = 477
Score = 164 bits (414), Expect = 9e-38
Identities = 113/341 (33%), Positives = 170/341 (49%), Gaps = 16/341 (4%)
Frame = +3
Query: 291 LPMDVAFHVFSRLPLKTLSQCRWVCKSWYNLILHPSFAKFHYAMA---ITNKSHCILVRD 461
LP+ + SRLP KT+ C VCK W +LIL P FAK H+ A + +SH R
Sbjct: 35 LPIQNLVDILSRLPFKTIFSCMCVCKKWKDLILAPDFAKLHHTRAPASLILRSHRHGRRR 94
Query: 462 WKKNCYLIDHEVFDKFERSATAYNIKLRKFDELFSMERYFSRYDVVGSVNGLICFSADSY 641
++ L+D E D A K F +++V + NGLIC +
Sbjct: 95 RPRSLCLLDLEASDICSPDAAV------KLSPDFGFPT--GNFEIVNTCNGLICI---RH 143
Query: 642 FY-----YVCNPIIGEYIILPESPKNDVQPVVSGFGFYPIADDYKVIRILEKTLNCFEAE 806
F+ + NP++G+YI LP + K V S FG P D+YKVI+ +++ + EAE
Sbjct: 144 FHSPNDISILNPLVGDYITLPLTKKKHKSYVFSWFGHSPKTDEYKVIQFVQQP-SKLEAE 202
Query: 807 VYSLVSGSWRTIED---VPNITHRKLSNVFVNGSLHWITRE-NGSKVILSFNVGTEVFNV 974
+++L G+W +I P I R N FV G LHWI + + S+ I G E+F
Sbjct: 203 IHTLGKGTWTSIHGGALSPPIDMR-CHNAFVGGCLHWIVNDPSKSEFIYCLEFGRELFQP 261
Query: 975 IQLPPYVNKNRNNAFES--LGVLGERLCLVDNDLFTDYEIWIMKDYGVDGSWTKEYVLGR 1148
+ PP++ N + LGVLG L D L ++IW+MK YGV SWTKE++L
Sbjct: 262 VAAPPHLGPNDKDRTGDMMLGVLGGCLYFFDYPLGDSFDIWVMKQYGVQESWTKEFILKN 321
Query: 1149 --INVYRFCHGVHEMIQLRNGELLMVNSKQYLIYYDPQKKS 1265
++ + + L NGE+LM + + ++ Y+P+ +S
Sbjct: 322 PSTDIIWYWDLYRPISLLSNGEILMSHKSKAMVSYNPEDRS 362
>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
gi|222854763|gb|EEE92310.1| f-box family protein [Populus
trichocarpa]
Length = 396
Score = 147 bits (370), Expect = 1e-32
Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 28/352 (7%)
Frame = +3
Query: 291 LPMDVAFHVFSRLPLKTLSQCRWVCKSWYNLILHPSFAKFHYAMAITNKSHCILV----- 455
LP+++ + RLP K L CR V K W LI P+F K H ++ S+ ++
Sbjct: 4 LPLEMIAEILCRLPAKELLCCRSVSKPWCALIDGPNFVKLHLKHSMDTSSNLYIILRTTS 63
Query: 456 ----RDWKKNCYLIDHEVFDKFERSATAYNIKLRKFDELFSMERYFSRYDVVGSVNGLIC 623
D+++N L D + YN ++ V+GSVNGL+C
Sbjct: 64 HVHYMDFEQNLVLNDCVTLKELNHPLMCYNHGIK----------------VLGSVNGLLC 107
Query: 624 FSADSYFYYVCNPIIGEYIILPESP--------KNDVQPVVSGFGFYPIADDYKVIRILE 779
S V NP ++ ++P P V GFG+ + DDYK++RI +
Sbjct: 108 ISNVVDDIAVWNPSTRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQ 167
Query: 780 -----KTLNCFEAEVYSLVSGSWRTIEDVPNITHRKLSN-VFVNGSLHWITRENG----S 929
K E +VYSL SWR I D+P H +N VF NG+LHW+ EN +
Sbjct: 168 FGGGGKRSFESEVKVYSLRKQSWRRIGDMPYCVHYPGANGVFANGALHWVVGENPESNVA 227
Query: 930 KVILSFNVGTEVFNVIQLPPYVNKNRNNAFESLGVLGERLCLVDNDLFTDYEIWIMKDYG 1109
++++ ++G E + + P Y +KN + LGVL LC + N L ++W+MK+YG
Sbjct: 228 NIVVALDLGVEDYREVLQPEYKDKN---FYIDLGVLRGCLCFLANFLGERVDVWMMKEYG 284
Query: 1110 VDGSWTKEYVLGRINVYRFCHGVHEMIQLRNG-ELLMVNSKQYLIYYDPQKK 1262
V SWTK + + + V F + + ++G E+L+ + L +YD ++K
Sbjct: 285 VKESWTKLFSVAQYEVIGFLRSLKPLAYSKSGDEVLIEHDNLDLCWYDLKRK 336
>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
gi|222861279|gb|EEE98821.1| f-box family protein [Populus
trichocarpa]
Length = 422
Score = 144 bits (364), Expect = 6e-32
Identities = 111/390 (28%), Positives = 179/390 (45%), Gaps = 38/390 (9%)
Frame = +3
Query: 291 LPMDVAFHVFSRLPLKTLSQCRWVCKSWYNLILHPSFAKFHYAMAITNKSH-CILVR--- 458
LP ++A + SRLP+ +L Q + VC++W L+ P + + + + H C+++
Sbjct: 28 LPREIAHDILSRLPITSLVQFKCVCRAWRALVQDPQLVDLYLSCSTQDTDHPCLILHCDF 87
Query: 459 DWKKNCYLIDHEVFDKFERSATAYNIKLRKFDELFSMERYFSRYDVVGSVNGLICFSADS 638
+ N Y +D ++ + K+++ FS ++VVGS NGL+C S
Sbjct: 88 PIRNNLYFVDFAAHEEEKE-------KVKRIPAPFSS--MMPEFEVVGSCNGLLCLSDSL 138
Query: 639 Y--FYYVCNPIIGEYIILPESPKNDVQPVVSGFGFYPIADDYKVIRIL------------ 776
Y Y+ NP G Y LP+S + Q VVSGFGF P +YKVIRI+
Sbjct: 139 YNDSLYIYNPFTGCYKELPKSLQYPDQEVVSGFGFNPKTKEYKVIRIVYYRNGHGGYPRS 198
Query: 777 -EKTLNCFEAEVYSLVSGSWRTIEDVPNITHRKLSNVFVNGSLHWIT---RENGSKVILS 944
E ++ +L WR++ V R+ S VNG LHWI+ R ++ ++S
Sbjct: 199 RRIIYPLSEVQILTLGCPEWRSLGKVSYRLVRRASGALVNGRLHWISRPCRNKPARRLVS 258
Query: 945 FNVGTEVFNVIQLPPYVNKNRNNAFESLGVLGERLCLVDNDLFTDYEIWIMKDYGVDGSW 1124
F++ E F + P NR N L VL L + EIW+MK+Y V SW
Sbjct: 259 FDLTDEQFREVSKPDCGGLNRCN--YHLVVLRGCLSAAVYCNYGRLEIWVMKEYNVKESW 316
Query: 1125 TKEYVLG-------------RINVYRFCHG---VHEMIQLRNGELLMVNSKQYLIYYDPQ 1256
KEY +G ++ +++ V + L+NGE+L+ + L+ YDP+
Sbjct: 317 VKEYNIGAYMPKGLKQNQDRQLKIWKNSSNGRVVGALCVLKNGEILLEYKNRVLVSYDPK 376
Query: 1257 KKSCIPILIEDLKKESVVKIRQQIIQVGSL 1346
+D++ + Q ++ VGSL
Sbjct: 377 NGK-----FKDIELQGAPNWFQTVVHVGSL 401
>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
gi|222843314|gb|EEE80861.1| f-box family protein [Populus
trichocarpa]
Length = 408
Score = 144 bits (364), Expect = 6e-32
Identities = 111/390 (28%), Positives = 180/390 (46%), Gaps = 38/390 (9%)
Frame = +3
Query: 291 LPMDVAFHVFSRLPLKTLSQCRWVCKSWYNLILHPSFAKFHYAMAITNKSHCILVR---D 461
LP ++A + SRLP+ +L + + VC++W + L P + + + C+++
Sbjct: 28 LPREIAQDILSRLPITSLVKFKCVCRAWRAMALDPEVVNLYLSCSTQETDPCVILHCDFP 87
Query: 462 WKKNCYLIDHEVFDKFERSATAYNIKLRKFDELFSMERYFSRYDVVGSVNGLICFSADSY 641
+ N Y +D ++ + K+++ FS ++VVGS NGL+C S DS
Sbjct: 88 IRNNLYFVDFAAHEEEKE-------KVKRIRAPFSS--MMPEFEVVGSCNGLLCLS-DSL 137
Query: 642 F---YYVCNPIIGEYIILPESPKNDVQPVVSGFGFYPIADDYKVIRIL------------ 776
F Y+ NP G Y LP+S + Q VV GFGF P ++YKVIRI+
Sbjct: 138 FNDSLYIYNPFTGRYKELPKSLQYPDQEVVFGFGFNPKTNEYKVIRIVYYRNGHGRYPRS 197
Query: 777 -EKTLNCFEAEVYSLVSGSWRTIEDVPNITHRKLSNVFVNGSLHWIT---RENGSKVILS 944
+ ++ +L WR++ V R+ S VNG LHW++ R ++ ++S
Sbjct: 198 RRIIYPLSQVQILTLGCPGWRSLGKVSYRLVRRASETLVNGRLHWVSRPCRNKPARRLVS 257
Query: 945 FNVGTEVFNVIQLPPYVNKNRNNAFESLGVLGERLCLVDNDLFTDYEIWIMKDYGVDGSW 1124
F++ E F + P NR + L VL L + + EIW+MK+Y V SW
Sbjct: 258 FDLTDEQFREVPKPDCGGLNRCD--YHLAVLRGCLSVAVYCNYGRLEIWVMKEYNVKESW 315
Query: 1125 TKEYVLG-------RINVYRFC---------HGVHEMIQLRNGELLMVNSKQYLIYYDPQ 1256
KEY +G + N+ R V + L+NGE+L+ + L+ YDP+
Sbjct: 316 VKEYNIGAYMPKGLKQNLVRPLKIWKNASNGRAVRALCVLKNGEILLEYKNRALVSYDPK 375
Query: 1257 KKSCIPILIEDLKKESVVKIRQQIIQVGSL 1346
K +D+ + K Q ++ VGSL
Sbjct: 376 KGK-----FKDIDLQGTPKWFQTVVHVGSL 400
>ref|XP_003612169.1| F-box family protein [Medicago truncatula]
gi|355513504|gb|AES95127.1| F-box family protein
[Medicago truncatula]
Length = 1154
Score = 142 bits (359), Expect = 2e-31
Identities = 124/416 (29%), Positives = 190/416 (45%), Gaps = 58/416 (13%)
Frame = +3
Query: 291 LPMDVAFHVFSRLPLKTLSQCRWVCKSWYNLILHPSFAKFHYAMAITNKSHCILVRDWKK 470
LP + H+ LP+K+L C VCK W LI P FAK ++ C+++R
Sbjct: 50 LPSHIIAHMLLHLPIKSLLICECVCKIWKTLISEPHFAKLNF----ERSQVCLMIR--ID 103
Query: 471 NCYLIDHEVF------DKFE-----------------RSATAYNIKLRKFDELFSMERYF 581
+C L+ ++ +KF+ R+A +Y K+ + + Y+
Sbjct: 104 DCRLVSRTMYLLECDPEKFQIGSNSRVKLAPIFKLPLRNANSYKEKIENKPKC-PIRPYY 162
Query: 582 SRYDVVGSVNGLICF--SADSYFYYVCNPIIGEYIILPESP----KNDVQPVVSG---FG 734
++ VV S NGL+C + +CNP+ GE+I LP++ ND+ VSG FG
Sbjct: 163 DKFGVVNSCNGLLCLRHPFEGRPLVICNPVTGEFIRLPKATANLIHNDIVDKVSGIAAFG 222
Query: 735 FYPIADDYKVIRILEK--------TLNCFEAEVYSLVSGSWRTIEDVPNITHRKLSNV-- 884
F P ++YKV+ I +K + E+ +L + SWR E P I+ ++
Sbjct: 223 FQPKTNEYKVMYIWDKYVRRGNGWVFDHIVLEINTLGTPSWRNAEVDPQISIGSGLSLHY 282
Query: 885 --FVNGSLHWITRENGSKVILSFNVGTEVFNVIQLPPYVNKNRNNAFE-----SLGVLGE 1043
+VNG+LHWI E+ + IL F +E PP V +N+NN F +G L
Sbjct: 283 PTYVNGALHWIRFEDEERSILCFCFESERLQSFPSPP-VFQNQNNGFRRNERIRMGELRG 341
Query: 1044 RLCLVDNDLFTDYEIWIMKDYGVDGSWTKEY-------VLGRINVYRF--CHGVHEMIQL 1196
L + D F D +W+M +Y + SWTK Y LGR + R+ C V +
Sbjct: 342 LLYICDTYSFRDVAMWVMNEYDIGESWTKVYNIDTLISPLGRPDSQRYGLCWPVKNFEE- 400
Query: 1197 RNGELLMVNSKQYLIYYDPQKKSCIPILIEDLKKESVVKIRQQIIQVGSLISPKCV 1364
+L+ +S LIYY+P+K + I + E V + I V SLIS K V
Sbjct: 401 -GAAILLYHSCNCLIYYEPKKHAFKVFRIHGISSEFV----EIIPHVPSLISLKDV 451
Score = 135 bits (341), Expect = 3e-29
Identities = 125/429 (29%), Positives = 186/429 (43%), Gaps = 71/429 (16%)
Frame = +3
Query: 291 LPMDVAFHVFSRLPLKTLSQCRWVCKSWYNLILHPSFAKFHYAMAITNKSHCILVRDWK- 467
LP + + +L +K+L C+ VCK W +I P FAK + A S I D +
Sbjct: 712 LPSHITTQILLQLSIKSLLICKCVCKIWKTMISEPHFAKLQFERAPL--SLMIRTNDGRL 769
Query: 468 --KNCYLI--DHEVFD-----------------------------KFERSATAYNIKLRK 548
+ YL+ DHE F+ K +R A + L K
Sbjct: 770 VSRTMYLLECDHEKFEIGSNNHVKLAPIFKLPLRNANSYREKIENKPKRPIRAARLALEK 829
Query: 549 FDEL---------FSMERYFSRYDVVGSVNGLICFS--ADSYFYYVCNPIIGEYIILPES 695
E + Y+ ++ V S NGL+C +D + +CNP+ GE+I LPE+
Sbjct: 830 NGENSNGDSQRLNIDFKPYYDKFGVANSCNGLLCLCCPSDEHPLSICNPVTGEFIKLPEA 889
Query: 696 PKN--DVQPVVS-----GFGFYPIADDYKVIRILEKTLN-----CFEA---EVYSLVSGS 830
N D + ++ GFGF P ++YKVIRI + F+ E+Y+L + S
Sbjct: 890 TINTHDERSPLNMRGQVGFGFQPKTNEYKVIRIWGSDVKRGNRWVFDRMVLEIYTLGTPS 949
Query: 831 WRTIEDVPNITHRKLSNVF------VNGSLHWITRENGSKVILSFNVGTEVFNVIQLPPY 992
WR E P I+ SN++ VNG++HWI + + IL F + E PP
Sbjct: 950 WRNAEVDPQISIG--SNIWLRYPTCVNGTIHWIRFKGQERSILCFCLENERLQSFPSPP- 1006
Query: 993 VNKNRNNAFES-----LGVLGERLCLVDNDLFTDYEIWIMKDYGVDGSWTKEYVLGRINV 1157
V +N+NN F +G L L + D F D +W+M +YG+ SWTK Y + +
Sbjct: 1007 VLQNQNNGFRHNECIRIGELRGLLYICDTSFFRDVAMWVMNEYGIGESWTKVYNIDTL-- 1064
Query: 1158 YRFCHGVHEMIQLRNGELLMVNSKQYLIYYDPQKKSCIPILIEDLKKESVVKIRQQIIQV 1337
+ L +L+ +S LIYY+P+K I+ E V + I V
Sbjct: 1065 ---------VSPLEGAAILLYHSCNCLIYYEPEKLGFKVFRIQGTSSEFV----EIIPHV 1111
Query: 1338 GSLISPKCV 1364
SLIS K V
Sbjct: 1112 PSLISLKDV 1120