BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00009796
         (792 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   189   6e-46
ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|2...   183   3e-44
ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast ...   182   9e-44
ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|2...   181   1e-43
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]      177   2e-42

>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score =  189 bits (480), Expect = 6e-46
 Identities = 105/184 (57%), Positives = 120/184 (65%), Gaps = 5/184 (2%)
 Frame = +3

Query: 237 RVFGEDPHPPWMSSFVSS--CTEFDEKSAAV---FQKMETKKYNALRRRQVXXXXXXXXX 401
           R+F +DP  PW+SSF+    C         V   F++ E + Y  LRRRQV         
Sbjct: 103 RIFVQDP--PWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEAWER 160

Query: 402 XXXXXXXXXXXXXXKKLAPNLPYVKSLFLGWFEPLREAIAKEHKLQETKKQKAAYAHHIG 581
                         KKLAPNLPYVK+LFLGWFEPLREAI KE + Q TKKQKAAYA HI 
Sbjct: 161 MVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIE 220

Query: 582 LLPADKMAVIVMHKMMGLLMTGQDDGCVRVVQAAVHIGEAIEQEVRIHNFLERAKKLRSR 761
           LLPADKMAVIVMHKMMGL+M G ++GCVRVVQAAV IG AIEQEVRIH+FLE+ K     
Sbjct: 221 LLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERH 280

Query: 762 KKIG 773
           K +G
Sbjct: 281 KTVG 284


>ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|222866553|gb|EEF03684.1|
           predicted protein [Populus trichocarpa]
          Length = 882

 Score =  183 bits (465), Expect = 3e-44
 Identities = 99/178 (55%), Positives = 122/178 (68%), Gaps = 2/178 (1%)
 Frame = +3

Query: 237 RVFGEDPHPPWMSS-FVSSCTEFDEKSAAV-FQKMETKKYNALRRRQVXXXXXXXXXXXX 410
           +VF +DP  PW+S+ F     +   K   V F+ +E +KYN LRRRQ+            
Sbjct: 8   KVFIQDP--PWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERMAD 65

Query: 411 XXXXXXXXXXXKKLAPNLPYVKSLFLGWFEPLREAIAKEHKLQETKKQKAAYAHHIGLLP 590
                      +KLAPNLPYVK L LGWFEPL+EAI KE K++++KKQK+A++ +I LLP
Sbjct: 66  EYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIELLP 125

Query: 591 ADKMAVIVMHKMMGLLMTGQDDGCVRVVQAAVHIGEAIEQEVRIHNFLERAKKLRSRK 764
           ADKMAVIVMHKMMGLLM G +DGCVRVVQAAV IG AIEQEVRIHNFLE+ K  + +K
Sbjct: 126 ADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKK 183


>ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
           [Ricinus communis] gi|223532193|gb|EEF33998.1|
           DNA-directed RNA polymerase 3B, chloroplast precursor,
           putative [Ricinus communis]
          Length = 1000

 Score =  182 bits (461), Expect = 9e-44
 Identities = 99/180 (55%), Positives = 118/180 (65%), Gaps = 2/180 (1%)
 Frame = +3

Query: 237 RVFGEDPHPPWMSS-FVSSCTEFDEKSAAV-FQKMETKKYNALRRRQVXXXXXXXXXXXX 410
           RVF +DP  PW+S+ F     +   K   + F+ +E +KYN LRRRQ+            
Sbjct: 113 RVFIQDP--PWISALFFKGLYKIPNKEVKLEFKDIEKRKYNLLRRRQIREETEAWERMVE 170

Query: 411 XXXXXXXXXXXKKLAPNLPYVKSLFLGWFEPLREAIAKEHKLQETKKQKAAYAHHIGLLP 590
                      +KLAPNLPYVK LFLGWFEPL+E I  E  LQ +KK KAA+A HI LLP
Sbjct: 171 EYKALVKEMCERKLAPNLPYVKGLFLGWFEPLKEGIKSEQNLQRSKKNKAAFAPHIELLP 230

Query: 591 ADKMAVIVMHKMMGLLMTGQDDGCVRVVQAAVHIGEAIEQEVRIHNFLERAKKLRSRKKI 770
           ADKMAVIVMHKM+GLLM G +DGCV +VQAAV IG AIEQEVRIHNFLE+ K  + +K I
Sbjct: 231 ADKMAVIVMHKMVGLLMVGHEDGCVPLVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKKTI 290


>ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|222854390|gb|EEE91937.1|
           predicted protein [Populus trichocarpa]
          Length = 982

 Score =  181 bits (460), Expect = 1e-43
 Identities = 99/182 (54%), Positives = 123/182 (67%), Gaps = 2/182 (1%)
 Frame = +3

Query: 237 RVFGEDPHPPWMSSFVSSCTE--FDEKSAAVFQKMETKKYNALRRRQVXXXXXXXXXXXX 410
           RVF  D   PW+S+     T    ++K     + +E +KYN LRRRQ+            
Sbjct: 108 RVFIRDS--PWISALYWKGTHKIANKKVKLELKDIEKRKYNLLRRRQIREETEAWERMAE 165

Query: 411 XXXXXXXXXXXKKLAPNLPYVKSLFLGWFEPLREAIAKEHKLQETKKQKAAYAHHIGLLP 590
                      +KLAPNLPYVKSLFLGWFEPL+EAI +E KL+++KKQK+A++ +I LLP
Sbjct: 166 EYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIELLP 225

Query: 591 ADKMAVIVMHKMMGLLMTGQDDGCVRVVQAAVHIGEAIEQEVRIHNFLERAKKLRSRKKI 770
           ADKMAVIVMHKMMGL+M G +DGCVRVVQAAV IG AIEQEVRIHNFLE+ K  + +K +
Sbjct: 226 ADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQRKKTM 285

Query: 771 GD 776
            D
Sbjct: 286 HD 287


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score =  177 bits (450), Expect = 2e-42
 Identities = 91/174 (52%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
 Frame = +3

Query: 237 RVFGEDPHPPWMSS-FVSSCTEFDEKSAAVFQKMETKKYNALRRRQVXXXXXXXXXXXXX 413
           R+F +DP  PW+++ F+    + +      F+++E +KYN LRRRQ+             
Sbjct: 118 RIFMQDP--PWVNTLFMKGLVDSNTGLRLEFKEIEREKYNLLRRRQIKAETEAWESMVEE 175

Query: 414 XXXXXXXXXXKKLAPNLPYVKSLFLGWFEPLREAIAKEHKLQETKKQKAAYAHHIGLLPA 593
                     KKLAPNLP VK+LFLGWFEPL++AI KE K Q ++KQKA Y +HI +LPA
Sbjct: 176 YREFVREMRDKKLAPNLPQVKALFLGWFEPLKKAIEKEQKSQRSRKQKAIYGYHIDMLPA 235

Query: 594 DKMAVIVMHKMMGLLMTGQDDGCVRVVQAAVHIGEAIEQEVRIHNFLERAKKLR 755
           DKMAVIVMHKMM LLM G D GCVR+VQAA+ IG AIEQE++IH+FLE+ K +R
Sbjct: 236 DKMAVIVMHKMMSLLMVGNDAGCVRLVQAALQIGTAIEQEIKIHSFLEKTKNIR 289