BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00009538
         (1051 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC16751.1| Contains similarity to pre-mRNA processing protei...    63   1e-16
ref|NP_001184905.1| pre-mRNA-processing factor 39 [Arabidopsis t...    63   1e-16
ref|NP_563700.1| pre-mRNA-processing factor 39 [Arabidopsis thal...    63   1e-16
ref|XP_002303113.1| predicted protein [Populus trichocarpa] gi|2...    62   4e-16
ref|XP_002320608.1| predicted protein [Populus trichocarpa] gi|2...    62   4e-16

>gb|AAC16751.1| Contains similarity to pre-mRNA processing protein PRP39 gb|L29224
           from S. cerevisiae. ESTs gb|R64908 and gb|T88158,
           gb|N38703 and gb|AA651043 come from this gene
           [Arabidopsis thaliana]
          Length = 1345

 Score = 63.2 bits (152), Expect(2) = 1e-16
 Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
 Frame = -1

Query: 472 RLFERGLA----------LWDAYVEYEYSLQQWSHFAMIYTRRLENPNQQLDHYFNRLSN 323
           RLFER L           LWD Y+EYEY  Q WS  A+IYTR LENP Q LD YF+    
Sbjct: 192 RLFERALVYVGTDFLSSPLWDKYIEYEYMQQDWSRVALIYTRILENPIQNLDRYFSSFKE 251

Query: 322 SEQER 308
             + R
Sbjct: 252 LAETR 256



 Score = 50.1 bits (118), Expect(2) = 1e-16
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
 Frame = -2

Query: 750 VFMDNILKIRKIYAIFLDEVSLCYGY*KKYVEQVMRLAAIKKTIHLF----IGIVFPKD 586
           +  DNI KIRK+Y  FL E  LCYGY KK+ +   R+ A+ K + ++    +G+ +  D
Sbjct: 113 IAQDNIAKIRKVYDAFLAEFPLCYGYWKKFADHEARVGAMDKVVEVYERAVLGVTYSVD 171


>ref|NP_001184905.1| pre-mRNA-processing factor 39 [Arabidopsis thaliana]
           gi|332189533|gb|AEE27654.1| pre-mRNA-processing factor
           39 [Arabidopsis thaliana]
          Length = 823

 Score = 63.2 bits (152), Expect(2) = 1e-16
 Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
 Frame = -1

Query: 472 RLFERGLA----------LWDAYVEYEYSLQQWSHFAMIYTRRLENPNQQLDHYFNRLSN 323
           RLFER L           LWD Y+EYEY  Q WS  A+IYTR LENP Q LD YF+    
Sbjct: 192 RLFERALVYVGTDFLSSPLWDKYIEYEYMQQDWSRVALIYTRILENPIQNLDRYFSSFKE 251

Query: 322 SEQER 308
             + R
Sbjct: 252 LAETR 256



 Score = 50.1 bits (118), Expect(2) = 1e-16
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
 Frame = -2

Query: 750 VFMDNILKIRKIYAIFLDEVSLCYGY*KKYVEQVMRLAAIKKTIHLF----IGIVFPKD 586
           +  DNI KIRK+Y  FL E  LCYGY KK+ +   R+ A+ K + ++    +G+ +  D
Sbjct: 113 IAQDNIAKIRKVYDAFLAEFPLCYGYWKKFADHEARVGAMDKVVEVYERAVLGVTYSVD 171


>ref|NP_563700.1| pre-mRNA-processing factor 39 [Arabidopsis thaliana]
           gi|15810565|gb|AAL07170.1| unknown protein [Arabidopsis
           thaliana] gi|20259567|gb|AAM14126.1| unknown protein
           [Arabidopsis thaliana] gi|21593463|gb|AAM65430.1|
           unknown [Arabidopsis thaliana]
           gi|332189531|gb|AEE27652.1| pre-mRNA-processing factor
           39 [Arabidopsis thaliana]
          Length = 768

 Score = 63.2 bits (152), Expect(2) = 1e-16
 Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
 Frame = -1

Query: 472 RLFERGLA----------LWDAYVEYEYSLQQWSHFAMIYTRRLENPNQQLDHYFNRLSN 323
           RLFER L           LWD Y+EYEY  Q WS  A+IYTR LENP Q LD YF+    
Sbjct: 192 RLFERALVYVGTDFLSSPLWDKYIEYEYMQQDWSRVALIYTRILENPIQNLDRYFSSFKE 251

Query: 322 SEQER 308
             + R
Sbjct: 252 LAETR 256



 Score = 50.1 bits (118), Expect(2) = 1e-16
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
 Frame = -2

Query: 750 VFMDNILKIRKIYAIFLDEVSLCYGY*KKYVEQVMRLAAIKKTIHLF----IGIVFPKD 586
           +  DNI KIRK+Y  FL E  LCYGY KK+ +   R+ A+ K + ++    +G+ +  D
Sbjct: 113 IAQDNIAKIRKVYDAFLAEFPLCYGYWKKFADHEARVGAMDKVVEVYERAVLGVTYSVD 171


>ref|XP_002303113.1| predicted protein [Populus trichocarpa] gi|222844839|gb|EEE82386.1|
           predicted protein [Populus trichocarpa]
          Length = 878

 Score = 62.4 bits (150), Expect(2) = 4e-16
 Identities = 32/57 (56%), Positives = 36/57 (63%), Gaps = 10/57 (17%)
 Frame = -1

Query: 472 RLFERGLA----------LWDAYVEYEYSLQQWSHFAMIYTRRLENPNQQLDHYFNR 332
           RLFERGLA          LWD Y+EYE    +W   AMIYTR LE PN++LD YFNR
Sbjct: 312 RLFERGLAYAGTDYMSYPLWDKYIEYEEVHAEWGRVAMIYTRILEIPNRKLDDYFNR 368



 Score = 49.3 bits (116), Expect(2) = 4e-16
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = -2

Query: 741 DNILKIRKIYAIFLDEVSLCYGY*KKYVEQVMRLAAIKKTIHLF----IGIVFPKD 586
           D ILKIRK+Y  FL E  LCYGY KKY +   RL  + K + ++    +G+ +  D
Sbjct: 236 DRILKIRKVYDAFLVEFPLCYGYWKKYADHEARLGFMDKVVEVYERAVLGVTYSVD 291


>ref|XP_002320608.1| predicted protein [Populus trichocarpa] gi|222861381|gb|EEE98923.1|
           predicted protein [Populus trichocarpa]
          Length = 674

 Score = 62.4 bits (150), Expect(2) = 4e-16
 Identities = 32/57 (56%), Positives = 36/57 (63%), Gaps = 10/57 (17%)
 Frame = -1

Query: 472 RLFERGLA----------LWDAYVEYEYSLQQWSHFAMIYTRRLENPNQQLDHYFNR 332
           RLFERGLA          LWD Y+EYE    +W   AMIYTR LE PN++LD YFNR
Sbjct: 111 RLFERGLAYVGTDYLSYPLWDKYIEYEEVHAEWGRVAMIYTRILEIPNRKLDDYFNR 167



 Score = 49.3 bits (116), Expect(2) = 4e-16
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = -2

Query: 741 DNILKIRKIYAIFLDEVSLCYGY*KKYVEQVMRLAAIKKTIHLF----IGIVFPKD 586
           D ILKIRK+Y  FL E  LCYGY KKY +   RL  + K + ++    +G+ +  D
Sbjct: 35  DKILKIRKVYDAFLGEFPLCYGYWKKYADHEARLGFMDKFVEVYERAVLGVTYSVD 90