BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008994
         (1833 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    92   2e-30
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    90   8e-24
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    84   6e-20
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    64   4e-19
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...    59   4e-18

>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
            truncatula]
          Length = 642

 Score = 92.4 bits (228), Expect(3) = 2e-30
 Identities = 45/96 (46%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
 Frame = +1

Query: 1132 RLQGTVDIIISNEQNGFIKGRIGTTCIGLTSKLISGLSQKRRGGNFSMKIDITQAYDSLR 1311
            RL   +  IIS EQ GF++GR    CI LTS+ I+ L  K  GGN ++KID+T+A+D+L 
Sbjct: 273  RLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLN 332

Query: 1312 WDFLFALLHKFAFCEQYCSWIKTFI--TKLSVMVNG 1413
            WDFL  +L  F F E +C+WIKT +  +K+ + +NG
Sbjct: 333  WDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNG 368



 Score = 45.8 bits (107), Expect(3) = 2e-30
 Identities = 20/38 (52%), Positives = 26/38 (68%)
 Frame = +2

Query: 1412 GAPCGFFGMGRGLRQGDPLTPTLFSVAEDALTRGLHSL 1525
            GA  GFF   RG+RQGDPL+P LF + E+ L+R +  L
Sbjct: 368  GAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISIL 405



 Score = 43.1 bits (100), Expect(3) = 2e-30
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = +3

Query: 945  IVGHDVVSTVGSFFREGFVLYGLNTNFLVLILKVKIPSTSDHYRPICVSNFFYRIFTKIC 1124
            IV  DV   V  FF+ G++    N N ++LI K     + D YR I + NF ++I  K+ 
Sbjct: 211  IVKKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVL 270

Query: 1125 AFEITR 1142
            A  + +
Sbjct: 271  ADRLAK 276


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
            truncatula]
          Length = 528

 Score = 90.1 bits (222), Expect(2) = 8e-24
 Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
 Frame = +1

Query: 1078 PFVLAIFSTGSLPRFVLLRLQGTVDIIISNEQNGFIKGRIGTTCIGLTSKLISGLSQKRR 1257
            P  +A F    + + +  RL   +  I+S EQ GFI+GR    C+ L S+ I+ L QK  
Sbjct: 194  PIAMANFKFKIISKILADRLAQIMPNIVSQEQRGFIQGRNIKDCVCLASEAINMLDQKSF 253

Query: 1258 GGNFSMKIDITQAYDSLRWDFLFALLHKFAFCEQYCSWIKTFI--TKLSVMVNG 1413
            GGN + K+DI++A+D+L W FL  +L +F F E +C+WI   +   KLS+ +NG
Sbjct: 254  GGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQSAKLSICING 307



 Score = 48.5 bits (114), Expect(2) = 8e-24
 Identities = 22/39 (56%), Positives = 28/39 (71%)
 Frame = +2

Query: 1412 GAPCGFFGMGRGLRQGDPLTPTLFSVAEDALTRGLHSLV 1528
            G+  G+F   RG+RQGDPL+P LF +AED L+R L  LV
Sbjct: 307  GSQQGYFSCSRGVRQGDPLSPLLFCLAEDVLSRSLTKLV 345


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 84.0 bits (206), Expect(2) = 6e-20
 Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
 Frame = +1

Query: 1078 PFVLAIFSTGSLPRFVLLRLQGTVDIIISNEQNGFIKGRIGTTCIGLTSKLISGLSQKRR 1257
            P  LA F    + + +  RL      IIS EQ GFI+ R  + C+ L S+ I+ L +++ 
Sbjct: 520  PIALANFQFKIISKILADRLADITMRIISVEQRGFIRDRDISKCVILASEAINLLEKRQY 579

Query: 1258 GGNFSMKIDITQAYDSLRWDFLFALLHKFAFCEQYCSWIKTFI--TKLSVMVNG 1413
            GGN ++K+DI +A+D+L W+FL A+L +F F E++  WI   +   +LSV+VNG
Sbjct: 580  GGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARLSVLVNG 633



 Score = 41.6 bits (96), Expect(2) = 6e-20
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +2

Query: 1412 GAPCGFFGMGRGLRQGDPLTPTLFSVAEDALTRGL 1516
            G   GFF    G+RQGDPL+P LF + E+ L+R L
Sbjct: 633  GKAVGFFTCSHGVRQGDPLSPLLFCLVEEVLSRAL 667


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 64.3 bits (155), Expect(3) = 4e-19
 Identities = 34/107 (31%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
 Frame = +1

Query: 1111 LPRFVLLRLQGTVDIIISNEQNGFIKGRIGTTCIGLTSKLISGLSQKRRGGNF--SMKID 1284
            + + +  RL+  +  I++  QN F+ GR+ +    +  ++++ + Q+++G +F  ++KID
Sbjct: 530  ISKIIANRLKPILKSIVTPYQNAFVPGRLISDNCLIAHEVVNLIKQRKKGTHFLAALKID 589

Query: 1285 ITQAYDSLRWDFLFALLHKFAFCEQYCSWIKTFITKL--SVMVNGGP 1419
            + +AYD + WDFLF LL +  F   Y  WI   +T +  S++VNG P
Sbjct: 590  MFKAYDKVDWDFLFWLLTQMGFPSFYRQWIMQCVTTVSYSIIVNGEP 636



 Score = 47.4 bits (111), Expect(3) = 4e-19
 Identities = 24/61 (39%), Positives = 34/61 (55%)
 Frame = +3

Query: 945  IVGHDVVSTVGSFFREGFVLYGLNTNFLVLILKVKIPSTSDHYRPICVSNFFYRIFTKIC 1124
            IVG D+   V  FF  G++L   N   + LI KV+ P  +  +RPI + N  Y+I +KI 
Sbjct: 475  IVGEDIWRAVSHFFTTGYILQEWNQTNICLIPKVERPEQACQFRPISLCNVIYKIISKII 534

Query: 1125 A 1127
            A
Sbjct: 535  A 535



 Score = 30.8 bits (68), Expect(3) = 4e-19
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 1412 GAPCGFFGMGRGLRQGDPLTPTLFSVAEDALTR 1510
            G P   F    GLRQGDPL+  LF +  D L+R
Sbjct: 634  GEPTTRFKPSCGLRQGDPLSSYLFILIMDVLSR 666


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score = 59.3 bits (142), Expect(3) = 4e-18
 Identities = 29/100 (29%), Positives = 53/100 (53%)
 Frame = +1

Query: 1111 LPRFVLLRLQGTVDIIISNEQNGFIKGRIGTTCIGLTSKLISGLSQKRRGGNFSMKIDIT 1290
            + + +  RL+  + + IS  Q+ F+KGR+ T  + L ++L+ G  Q        +K+D+ 
Sbjct: 535  ISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLR 594

Query: 1291 QAYDSLRWDFLFALLHKFAFCEQYCSWIKTFITKLSVMVN 1410
            +A+DS+ W F+   L       ++ +WIK  IT  S  +N
Sbjct: 595  KAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSIN 634



 Score = 43.9 bits (102), Expect(3) = 4e-18
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = +2

Query: 1412 GAPCGFFGMGRGLRQGDPLTPTLFSVAEDALTRGLHS 1522
            G+ CG+F   +GLRQGDPL+P+LF +A + L+R L +
Sbjct: 637  GSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLEN 673



 Score = 36.2 bits (82), Expect(3) = 4e-18
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 945  IVGHDVVSTVGSFFREGFVLYGLNTNFLVLILKVKIPSTSDHYRPICVSNFFYRIFTKIC 1124
            IVG  +++ V  FFR G +L   N+  + ++ K         +RPI   N  Y++ +K+ 
Sbjct: 480  IVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLL 539

Query: 1125 A 1127
            A
Sbjct: 540  A 540