BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008982
         (1285 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-l...   421   e-115
ref|XP_002532079.1| exosome complex exonuclease rrp43, putative ...   421   e-115
ref|XP_002308947.1| predicted protein [Populus trichocarpa] gi|2...   418   e-114
ref|XP_002322717.1| predicted protein [Populus trichocarpa] gi|2...   414   e-113
emb|CBI29839.3| unnamed protein product [Vitis vinifera]              412   e-112

>ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-like [Vitis vinifera]
          Length = 303

 Score =  421 bits (1083), Expect = e-115
 Identities = 215/300 (71%), Positives = 246/300 (82%)
 Frame = +3

Query: 108  ADASGDLSGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGAVASADGSA 287
            A+ SGDLS EMEVDAFRRLFPLR++ER LL+SIRPDARPLG+ARDT++ALGAVASADGSA
Sbjct: 4    ANVSGDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSA 63

Query: 288  LVKIGHTTMLAAIKMEVMTLTVGSADEGCIAIDFHMPPICSPLIRPGRPAEAAPVISKQL 467
            L KIG TTMLAA+KMEVMT    S DEG IAI+F+MPPICSPL+RPGRPAE APV+SKQL
Sbjct: 64   LAKIGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQL 123

Query: 468  TDAILSSRMINLKELCLIPGKAAWMAYLDVYCXXXXXXXXXXXXXXXXXXFSHLHIPAVS 647
            +D ILSS MINLKEL L+ GKAAWMAYLD+YC                  FSHL IP VS
Sbjct: 124  SDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVS 183

Query: 648  VNDDGKVFAVSGEQIEGKLVKEPLNKEKRRLAFSCTPFALTCILHKQYILADPSAEEESI 827
            +N++G+V  VS E  EGK  KEP+NK KR+L  S  PF+LTCILHK YILADP+AEEESI
Sbjct: 184  LNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESI 243

Query: 828  METLVTVVLDTSGRLVSFHKPGGPFLASTSAIQDCIALTRQRVKELQKILNEAVADMELD 1007
            METLVTVVLD+SG+LVS +KPGGP LA  SA+QDCIALTRQRVKEL+ ILNEA++DME+D
Sbjct: 244  METLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAISDMEVD 303


>ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
            gi|223528261|gb|EEF30313.1| exosome complex exonuclease
            rrp43, putative [Ricinus communis]
          Length = 303

 Score =  421 bits (1081), Expect = e-115
 Identities = 213/303 (70%), Positives = 244/303 (80%)
 Frame = +3

Query: 99   MGLADASGDLSGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGAVASAD 278
            MGL + SGDLS EME DAFRRLFPL F+ERHL ESIRPD R LG+ARDTT+ALGAV SAD
Sbjct: 1    MGLPNVSGDLSTEMEADAFRRLFPLLFHERHLAESIRPDGRSLGRARDTTLALGAVVSAD 60

Query: 279  GSALVKIGHTTMLAAIKMEVMTLTVGSADEGCIAIDFHMPPICSPLIRPGRPAEAAPVIS 458
            GSA+ KIG TTM+AAIKMEVMT +  S DEGCIAIDFHMPPICSPL+RPGRPAEAAPV+S
Sbjct: 61   GSAIAKIGSTTMMAAIKMEVMTPSSESPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVS 120

Query: 459  KQLTDAILSSRMINLKELCLIPGKAAWMAYLDVYCXXXXXXXXXXXXXXXXXXFSHLHIP 638
            KQL+D I+SS MI+LKEL L+ GKAAWMAYLD+YC                  F++L IP
Sbjct: 121  KQLSDTIMSSAMIDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALFSAVAAFTNLQIP 180

Query: 639  AVSVNDDGKVFAVSGEQIEGKLVKEPLNKEKRRLAFSCTPFALTCILHKQYILADPSAEE 818
             VS+NDDGKV  VS E   GK  KE +NKEKR+L     PF+LTC+LHK YILADP+AEE
Sbjct: 181  IVSLNDDGKVVVVSDENEGGKREKEAVNKEKRKLTLRSLPFSLTCVLHKNYILADPTAEE 240

Query: 819  ESIMETLVTVVLDTSGRLVSFHKPGGPFLASTSAIQDCIALTRQRVKELQKILNEAVADM 998
            ESIMETLVTVVLD+S RLVSF+KPGGP LA TSA+QDC+ALTRQRVKELQ IL+EA++ M
Sbjct: 241  ESIMETLVTVVLDSSARLVSFYKPGGPVLAYTSAVQDCVALTRQRVKELQNILDEALSGM 300

Query: 999  ELD 1007
            ++D
Sbjct: 301  QID 303


>ref|XP_002308947.1| predicted protein [Populus trichocarpa] gi|222854923|gb|EEE92470.1|
            predicted protein [Populus trichocarpa]
          Length = 318

 Score =  418 bits (1074), Expect = e-114
 Identities = 219/318 (68%), Positives = 249/318 (78%), Gaps = 15/318 (4%)
 Frame = +3

Query: 99   MGLADASGDLSGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGAVASAD 278
            MG+ DASGDLS EMEVDAFRRLFPLR++ERHL ESIRPDARPLG+ARDTT+ALGAVASA 
Sbjct: 1    MGVPDASGDLSSEMEVDAFRRLFPLRYFERHLSESIRPDARPLGRARDTTLALGAVASAH 60

Query: 279  GSALVKIGHTTMLAAIKMEVMTLTVGSADEGCIAIDFHMPPICSPLIRPGRPAEAAPVIS 458
            GSAL KIG TTMLAAIKMEVMT +  S +EG IAIDFHMPPICSP++RPGRPAEAAPVIS
Sbjct: 61   GSALAKIGSTTMLAAIKMEVMTPSTESPEEGSIAIDFHMPPICSPIVRPGRPAEAAPVIS 120

Query: 459  KQLTDAI---LSSRMINLKELCLIPGKAAWMAYLDVYCXXXXXXXXXXXXXXXXXXFSH- 626
            KQL+D I   ++S MINLKEL L+ GKAAWMAYLD+YC                  FSH 
Sbjct: 121  KQLSDTISRQVNSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVGAFSHS 180

Query: 627  -----------LHIPAVSVNDDGKVFAVSGEQIEGKLVKEPLNKEKRRLAFSCTPFALTC 773
                       + IP VS+NDDGK+  VS E    KL +EP+NKEKR+L  S  PF+LTC
Sbjct: 181  AFIYYRSLICAVQIPIVSLNDDGKIVLVSEEDDGTKLEEEPVNKEKRKLTLSSIPFSLTC 240

Query: 774  ILHKQYILADPSAEEESIMETLVTVVLDTSGRLVSFHKPGGPFLASTSAIQDCIALTRQR 953
            ILHK YILADP+AEEESIMETLVTVVLD+S RLVSF+KPGGP LA TSA+QDC+ALTRQR
Sbjct: 241  ILHKNYILADPTAEEESIMETLVTVVLDSSSRLVSFYKPGGPVLAQTSAVQDCVALTRQR 300

Query: 954  VKELQKILNEAVADMELD 1007
            VKELQ IL+E ++ ME+D
Sbjct: 301  VKELQDILDETISGMEID 318


>ref|XP_002322717.1| predicted protein [Populus trichocarpa] gi|222867347|gb|EEF04478.1|
           predicted protein [Populus trichocarpa]
          Length = 439

 Score =  414 bits (1064), Expect = e-113
 Identities = 217/318 (68%), Positives = 243/318 (76%), Gaps = 20/318 (6%)
 Frame = +3

Query: 99  MGLADASGDLSGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGAVASAD 278
           MG+ DASGDLS EMEVDAFR LFPLR++ERHL ESIRPDARPLG+ARDTT+ALGAVASA 
Sbjct: 1   MGVPDASGDLSSEMEVDAFRHLFPLRYFERHLSESIRPDARPLGRARDTTLALGAVASAH 60

Query: 279 GSALVKIGHTTMLAAIKMEVMTLTVGSADEGCIAIDFHMPPICSPLIRPGRPAEAAPVIS 458
           GSAL KIG TTMLAAIKMEVMT +  S DEGCIAIDFHMPPICSP++RPGRPAEAAPVIS
Sbjct: 61  GSALAKIGSTTMLAAIKMEVMTPSTESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVIS 120

Query: 459 KQLTDAILS--------------------SRMINLKELCLIPGKAAWMAYLDVYCXXXXX 578
           KQL+D I                      S MINLKEL L+ GKAAWMAYLD+YC     
Sbjct: 121 KQLSDTISRQVKFSASIDSPQRLILHAEISGMINLKELSLVSGKAAWMAYLDIYCLDADG 180

Query: 579 XXXXXXXXXXXXXFSHLHIPAVSVNDDGKVFAVSGEQIEGKLVKEPLNKEKRRLAFSCTP 758
                        FSHL IP VS+NDDGK+  VS E    KL KEP+NKEKR+L  S  P
Sbjct: 181 ALFDAALLSAVAAFSHLQIPIVSLNDDGKIVLVSEEDEGAKLEKEPVNKEKRKLTLSSIP 240

Query: 759 FALTCILHKQYILADPSAEEESIMETLVTVVLDTSGRLVSFHKPGGPFLASTSAIQDCIA 938
           F+LTCILHK YILADP+AEEESIMETLVTVVLD+S RLVSF+KPGG   A TSA++DC+A
Sbjct: 241 FSLTCILHKNYILADPTAEEESIMETLVTVVLDSSARLVSFYKPGGSVFAYTSAVKDCVA 300

Query: 939 LTRQRVKELQKILNEAVA 992
           LTRQRVKELQ+IL+EA++
Sbjct: 301 LTRQRVKELQEILDEAIS 318


>emb|CBI29839.3| unnamed protein product [Vitis vinifera]
          Length = 311

 Score =  412 bits (1059), Expect = e-112
 Identities = 214/308 (69%), Positives = 245/308 (79%), Gaps = 8/308 (2%)
 Frame = +3

Query: 108  ADASGDLSGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGAVASADGSA 287
            A+ SGDLS EMEVDAFRRLFPLR++ER LL+SIRPDARPLG+ARDT++ALGAVASADGSA
Sbjct: 4    ANVSGDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSA 63

Query: 288  LVKIGHTTMLAAIKMEVMTLTVGSADEGCIAIDFHMPPICSPLIRPGRPAEAAPVISKQL 467
            L KIG TTMLAA+KMEVMT    S DEG IAI+F+MPPICSPL+RPGRPAE APV+SKQL
Sbjct: 64   LAKIGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQL 123

Query: 468  TDAILS--------SRMINLKELCLIPGKAAWMAYLDVYCXXXXXXXXXXXXXXXXXXFS 623
            +D IL         S MINLKEL L+ GKAAWMAYLD+YC                  FS
Sbjct: 124  SDTILRHVNVVTSFSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFS 183

Query: 624  HLHIPAVSVNDDGKVFAVSGEQIEGKLVKEPLNKEKRRLAFSCTPFALTCILHKQYILAD 803
            HL IP VS+N++G+V  VS E  EGK  KEP+NK KR+L  S  PF+LTCILHK YILAD
Sbjct: 184  HLRIPVVSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILAD 243

Query: 804  PSAEEESIMETLVTVVLDTSGRLVSFHKPGGPFLASTSAIQDCIALTRQRVKELQKILNE 983
            P+AEEESIMETLVTVVLD+SG+LVS +KPGGP LA  SA+QDCIALTRQRVKEL+ ILNE
Sbjct: 244  PTAEEESIMETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNE 303

Query: 984  AVADMELD 1007
            A++DME+D
Sbjct: 304  AISDMEVD 311